Contig 005247:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF041B21Sequence458005247 (3)ref|XP_011070377.1|4e-05PREDICTED: probable WRKY transcription factor 40 [Sesamum indicum]406005247 (3)ref|XP_011070377.1|3e-05PREDICTED: probable WRKY transcription factor 40 [Sesamum indicum]
JMSF041B23Sequence190005247 (3)emb|CBI25166.3|2e-04unnamed protein product [Vitis vinifera]

Alignment

This contig is upended


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JMSF041B21+                                 TTTTTTTTTTAAGCTCCAATTCAAGTTTGTTACCCTAG
                      ____________________________________________________________
consensus                                   TTTTTTTTTTAAGCTCCAATTCAAGTTTGTTACCCTAG
 
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rJMSF041B21-                        AATTTACATTGTTTCTTTTCATTGAGCCAATTTTTGTTTTCCTATT
JMSF041B21+           TTTGGCATTCAACAAATTTACATTGTTTCTTTTCATTGAGCCAATTTTTGTTTTCCTATT
                      ____________________________________________________________
consensus             TTTGGCATTCAACAAATTTACATTGTTTCTTTTCATTGAGCCAATTTTTGTTTTCCTATT
 
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rJMSF041B21-          CTAATATCACACGAGTATTTCACTCCGGCCAACAAAGTTTAATTTGATGCACCGTTATTA
JMSF041B21+           CTAATATCACACGAGTATTTCACTCCGGCCAACAAAGTTTAATTTGATGCACCGTTATTA
                      ____________________________________________________________
consensus             CTAATATCACACGAGTATTTCACTCCGGCCAACAAAGTTTAATTTGATGCACCGTTATTA
 
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rJMSF041B21-          TTAATATTTTTGTACACTTTAATGTACTAAACTATGTTGAAGGATGGAATCATCAGCATG
JMSF041B21+           TTAATATTTTTGTACACTTTAATGTACTAAACTATGTTGAAGGATGGAATCATCAGCATG
                      ____________________________________________________________
consensus             TTAATATTTTTGTACACTTTAATGTACTAAACTATGTTGAAGGATGGAATCATCAGCATG
 
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rJMSF041B21-          AATCTGCCAGCGCATGGTCGACGAGAATTCTGTCGGAAATCGCCGCCGCCAGCGCATTCG
JMSF041B23+                GCCAGCGCATGGTCGACGAGAATTCTGTCGGAAATCNCCGCCGCCAGCGCATTCG
JMSF041B21+           AATCTGCCAGCGCATGGTCGACGAGAATTCTGTCGGAAATCGCCGCCGCCAGCGCATTCG
                      ____________________________________________________________
consensus             AATCTGCCAGCGCATGGTCGACGAGAATTCTGTCGGAAATCGCCGCCGCCAGCGCATTCG
 
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rJMSF041B21-          TGAAGCCCCGGTTTTTGGTCAAAGAAGAAGCCATTTTCTCAGCCAAAAAGTGTTGGAGTT
JMSF041B23+           NGAAGCCCCGGTTTTTGGTCAAAGAAGAAGCCATTTTCTCAGCCAAAAAGTGTTGGAGTT
JMSF041B21+           TGAAGCCCCGGTTTTTGGTCAAAGAAGAAGCCATTTTCTCAGCCAAAAAGTGTTGGAGTT
                      ____________________________________________________________
consensus             TGAAGCCCCGGTTTTTGGTCAAAGAAGAAGCCATTTTCTCAGCCAAAAAGTGTTGGAGTT
 
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rJMSF041B21-          CCACTGTATCAAGTGAAGTAAGAGATCTCTGAACTTTGGCCCGAATATCCAATCGGGCCG
JMSF041B23+           CCACNGTATCAAGNGAAGTAAGAGATCTNTGAACTTTGGCCCGAATATCCAATCGGGCCG
JMSF041B21+           CCACTGTATCAAGTGAAGTAAGAGATCTCTGAACTTTGGCCCGAATATCCAATCGGGCCG
                      ____________________________________________________________
consensus             CCACTGTATCAAGTGAAGTAAGAGATCTCTGAACTTTGGCCCGAATATCCAATCGGGCCG
 
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rJMSF041B21-          GGCTCGAAGAATTCTCTACATCTGAAACCGGGGCAGATTGATTGAGGTGTGAAGCCTTGC
JMSF041B23+           GGCT                                                        
JMSF041B21+           GGCTCGAAGAATTCTCTACATCTGAAACCGGGGCAGATTGATTGAGGTGTGAAGCCTTGC
                      ____________________________________________________________
consensus             GGCTCGAAGAATTCTCTACATCTGAAACCGGGGCAGATTGATTGAGGTGTGAAGCCTTGC