Contig 005240:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF040J10-                                                      TTCAGTTCTGAGGATG
                      ____________________________________________________________
consensus                                                         TTCAGTTCTGAGGATG
 
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rJMSF040J10-          TTAACTCACAAATGAAAAAAATAGTACCCCATAGGATCATAAGACAATGTTCCAAATCAT
                      ____________________________________________________________
consensus             TTAACTCACAAATGAAAAAAATAGTACCCCATAGGATCATAAGACAATGTTCCAAATCAT
 
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rJMSF040J10-          CAAATTTGATCTGTACATGTGGCTTGATTGCTTAACTAAGTTCTTGTAGGCGCCACCTCG
                      ____________________________________________________________
consensus             CAAATTTGATCTGTACATGTGGCTTGATTGCTTAACTAAGTTCTTGTAGGCGCCACCTCG
 
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rJMSF040J10-          GGAATCTACATCAAACTGCAAAACGTAAGCCTAATCAAACTGCTGGCGCAGGGCCATCTC
                      ____________________________________________________________
consensus             GGAATCTACATCAAACTGCAAAACGTAAGCCTAATCAAACTGCTGGCGCAGGGCCATCTC
 
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rJMSF040J10-          TGTCTCGCTCTTCCATGAAGCATGCGATGACTGACCCTTCATCCTCTTACTCTTCTCCTT
                      ____________________________________________________________
consensus             TGTCTCGCTCTTCCATGAAGCATGCGATGACTGACCCTTCATCCTCTTACTCTTCTCCTT
 
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rJMSF040J10-          GTCTTTTATGGTTGACCCTTTTTTCTTCCCCGCCTCTGTATTTGCATCTGAAGCAGGGCG
JMSF040J10+                                              CTGTATTTGCATCTGAAGCAGGGCG
                      ____________________________________________________________
consensus             GTCTTTTATGGTTGACCCTTTTTTCTTCCCCGCCTCTGTATTTGCATCTGAAGCAGGGCG
 
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rJMSF040J10-          ATCACCGCACATGGGGCAAACTATTCCTCTCGAATGTGAGTATGTCTTAGGAATCCCACA
JMSF040J10+           ATCACCGCACATGGGGCAAACTATTCCTCTCGAATGTGAGTATGTCTTAGGAATCCCACA
                      ____________________________________________________________
consensus             ATCACCGCACATGGGGCAAACTATTCCTCTCGAATGTGAGTATGTCTTAGGAATCCCACA
 
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rJMSF040J10-          AGTCAAGCATATCCTCATAAGATCTGCAGCATCTTCTGAACTTTTGCCTCCTTGTGCAGT
JMSF040J10+           AGTCAAGCATATCCTCATAAGATCTGCAGCATCTTCTGAACTTTTGCCTCCTTGTGCAGT
                      ____________________________________________________________
consensus             AGTCAAGCATATCCTCATAAGATCTGCAGCATCTTCTGAACTTTTGCCTCCTTGTGCAGT
 
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rJMSF040J10-          GGCCGAAGTCGCCGAACCCGCCAAAGAAACACTCCTTTGCCCTGTGGATGTCTTGGGCAT
JMSF040J10+           GGCCGAAGTCGCCGAACCCGCCAAAGAAACACTCCTTTGCCCTGTGGATGTCTTGGGCAT
                      ____________________________________________________________
consensus             GGCCGAAGTCGCCGAACCCGCCAAAGAAACACTCCTTTGCCCTGTGGATGTCTTGGGCAT
 
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rJMSF040J10-          GGTACCCTCTACATCACTTCTAACTCTTTCATGGATCCCAACTAACTGAGGCTTAGCCTC
JMSF040J10+           GGTACCCTCTACATCACTTCTAACTCTTTCATGGATCCCAACTAACTGAGGCTTAGCCTC
                      ____________________________________________________________
consensus             GGTACCCTCTACATCACTTCTAACTCTTTCATGGATCCCAACTAACTGAGGCTTAGCCTC
 
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rJMSF040J10-          AACTACAGCACCAGAAGGTAAATCTTTCTTATCTCTGTTGTTCTTACGGCGGCCGTGCCG
JMSF040J10+           AACTACAGCACCAGAAGGTAAATCTTTCTTATCTCTGTTGTTCTTACGGCGGCCGTGCCG
                      ____________________________________________________________
consensus             AACTACAGCACCAGAAGGTAAATCTTTCTTATCTCTGTTGTTCTTACGGCGGCCGTGCCG
 
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rJMSF040J10-          CCAGCGCTGGTTGTCGGCGTCATTAGCAGCTTCCTGAACACTGTTGTTTAGAAACTCCGG
JMSF040J10+           CCAGCGCTGGTTGTCGGCGTCATTAGCAGCTTCCTGAACACTGTTGTTTAGAAACTCCGG
                      ____________________________________________________________
consensus             CCAGCGCTGGTTGTCGGCGTCATTAGCAGCTTCCTGAACACTGTTGTTTAGAAACTCCGG
 
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rJMSF040J10-          CGGTGCCAAAACTTCGGAAAAGGCGTCGAGAGCAGAGGGGAGGGAGGAAGACGAAGAAGG
JMSF040J10+           CGGTGCCAAAACTTCGGAAAAGGCGTCGAGAGCAGAGGGGAGGGAGGAAGACGAAGAAGG
                      ____________________________________________________________
consensus             CGGTGCCAAAACTTCGGAAAAGGCGTCGAGAGCAGAGGGGAGGGAGGAAGACGAAGAAGG
 
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rJMSF040J10-          GTTAGGGTTGAAAAGAGGTTTGTATCGATTCTGGGGAACGGCGCCGTCGTCGTCGTCGTC
JMSF040J10+           GTTAGGGTTGAAAAGAGGTTTGTATCGATTCTGGGGAACGGCGCCGTCGTCGTCGTCGTC
                      ____________________________________________________________
consensus             GTTAGGGTTGAAAAGAGGTTTGTATCGATTCTGGGGAACGGCGCCGTCGTCGTCGTCGTC
 
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rJMSF040J10-          CTCCGGCTTGTCGTANCCGANCTGCTCTTCTCCTTCTCCGGCGTCGTCTTCTTCTTCCTC
JMSF040J10+           CTCCGGCTTGTCGTAGCCGAGCTGCTCTTCTCCTTCTCCGGCGTCGTCTTCTTCTTCCTC
                      ____________________________________________________________
consensus             CTCCGGCTTGTCGTAGCCGAGCTGCTCTTCTCCTTCTCCGGCGTCGTCTTCTTCTTCCTC
 
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rJMSF040J10-          GGCGGAGGAGTAGCCCTGCAAGAGTGTCAAGCTCATTC                      
JMSF040J10+           GGCGGAGGAGTAGCCCTGCAAGAGTGTCAAGCTCATTCCGACACAGTATACGGAGATCCG
                      ____________________________________________________________
consensus             GGCGGAGGAGTAGCCCTGCAAGAGTGTCAAGCTCATTCCGACACAGTATACGGAGATCCG
 
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JMSF040J10+           ATTTCAGCTGCTCCGATTTTCAACCCGACAACTTTGAGCTTAGGGATTTTTCACTGCCCC
                      ____________________________________________________________
consensus             ATTTCAGCTGCTCCGATTTTCAACCCGACAACTTTGAGCTTAGGGATTTTTCACTGCCCC