Contig 005225:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF012L12Sequence330005225 (3)ref|XP_009793108.1|2e-19PREDICTED: transmembrane emp24 domain-containing protein p24beta2-like isoform 709005974 (17)ref|XP_009769194.1|7e-126PREDICTED: soluble inorganic pyrophosphatase 1, chloroplastic-like [Nicotiana s
JMSF038I11Sequence675005225 (3)ref|XP_009793108.1|5e-79PREDICTED: transmembrane emp24 domain-containing protein p24beta2-like isoform 907005225 (3)ref|XP_009793108.1|6e-113PREDICTED: transmembrane emp24 domain-containing protein p24beta2-like isoform

Alignment

This contig is upended


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rJMSF038I11- TTAGTCTGCAACATGGGAAAATTTGTTAATAGGCA
                      ____________________________________________________________
consensus TTAGTCTGCAACATGGGAAAATTTGTTAATAGGCA
 
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rJMSF038I11- GAGCCACAAAAGGTTAAAGGTTCATAAGCCAGGAATAAGAAAATGCTATCATTTTTCGTT
                      ____________________________________________________________
consensus GAGCCACAAAAGGTTAAAGGTTCATAAGCCAGGAATAAGAAAATGCTATCATTTTTCGTT
 
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rJMSF038I11- CTTTTTGCCAAACGAATTTTCTTCATCCGCTTGGGCACCGATAACTTGAATGTCCGTGTC
                      ____________________________________________________________
consensus CTTTTTGCCAAACGAATTTTCTTCATCCGCTTGGGCACCGATAACTTGAATGTCCGTGTC
 
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rJMSF038I11- AAAAGATTAGACTCTCGACTGCCCAAGCTTCCGTTCAAACAACCGTTTTAGGAGAAAAAC
                      ____________________________________________________________
consensus AAAAGATTAGACTCTCGACTGCCCAAGCTTCCGTTCAAACAACCGTTTTAGGAGAAAAAC
 
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rJMSF038I11- TTGTAAAAAACTAGCGGCAATAAGAGCTGCAGACTCATACAAAGCTTTGTGAACTGCCCT
                      ____________________________________________________________
consensus TTGTAAAAAACTAGCGGCAATAAGAGCTGCAGACTCATACAAAGCTTTGTGAACTGCCCT
 
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rJMSF038I11- TTTGCTCATCCCTTCATTCACTATAGCTTGCCGGTCTGTCTGAGCCTCCAACCAATGCTG
JMSF038I11+ CTCCAACCAATGCTG
                      ____________________________________________________________
consensus TTTGCTCATCCCTTCATTCACTATAGCTTGCCGGTCTGTCTGAGCCTCCAACCAATGCTG
 
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rJMSF038I11- CTCGAACTGAATGTTATATAAAGCTTCCTCTAGCTTGTTAATGTGTTCGAACAAAGGCCT
JMSF038I11+ CTCGAACTGAATGTTATATAAAGCTTCCTCTAGCTTGTTAATGTGTTCGAACAAAGGCCT
                      ____________________________________________________________
consensus CTCGAACTGAATGTTATATAAAGCTTCCTCTAGCTTGTTAATGTGTTCGAACAAAGGCCT
 
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rJMSF038I11- GAGATGTTCATCTTTTGCGTGTTCATCGTGGAACATATAGTGACCAGAATGTACATCAAA
JMSF038I11+ GAGATGTTCATCTTTTGCGTGTTCATCGTGGAACATATAGTGACCAGAATGTACATCAAA
                      ____________________________________________________________
consensus GAGATGTTCATCTTTTGCGTGTTCATCGTGGAACATATAGTGACCAGAATGTACATCAAA
 
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rJMSF038I11- GTCGATGGTCTCATGGTACGGGGACTTATTAGTGAAACAGAAACGGTGAACGCCTTCCTG
JMSF038I11+ GTCGATGGTCTCATGGTACGGGGACTTATTAGTGAAACAGAAACGGTGAACGCCTTCCTG
                      ____________________________________________________________
consensus GTCGATGGTCTCATGGTACGGGGACTTATTAGTGAAACAGAAACGGTGAACGCCTTCCTG
 
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rJMSF038I11- ATGAGCCACAAACTCGGACTTCTCGCTTATTTTTTCACGAAAATCCTGAATTTGTTCGCC
JMSF038I11+ ATGAGCCACAAACTCGGACTTCTCGCTTATTTTTTCACGAAAATCCTGAATTTGTTCGCC
                      ____________________________________________________________
consensus ATGAGCCACAAACTCGGACTTCTCGCTTATTTTTTCACGAAAATCCTGAATTTGTTCGCC
 
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JMSF012L12+ ACCACAAGATCAACGCCTTCTTCACCCAAATTCCAGGACTTCTCAGA
rJMSF038I11- CACAGGTCCCTTCACCACAAGATCAACGCCTTCTTCACCCAAATTCCAGGACTGCTCAGA
JMSF038I11+ CACAGGTCCCTTCACCACAAGATCAACGCCTTCTTCACCCAAATTCCAGGACTGCTCAGA
                      ____________________________________________________________
consensus CACAGGTCCCTTCACCACAAGATCAACGCCTTCTTCACCCAAATTCCAGGACTGCTCAGA
 
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JMSF012L12+ CTTAATCACAACAAATGAAAAATGAACAGTGTCCCCCAATGCCACCTTGTGGGCAAAGCA
rJMSF038I11- CTTAATCACAACAAATGAAAAATGAACAGTGTCCCCCAATGCCACCTTGTGGGCAAAGCA
JMSF038I11+ CTTAATCACAACAAATGAAAAATGAACAGTGTCCCCCAATGCCACCTTGTGGGCAAAGCA
                      ____________________________________________________________
consensus CTTAATCACAACAAATGAAAAATGAACAGTGTCCCCCAATGCCACCTTGTGGGCAAAGCA
 
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JMSF012L12+ TTCCTCTCTATCTATCACAAATCTGATTCCGTATGCCCCTCCGGCGCTCCAAATCAGCAC
rJMSF038I11- TTCCTCTCTATCTATCACAAATCTGATTCCGTATGCCCCTCCGGCGCTCCAAATCAGCAC
JMSF038I11+ TTCCTCTCTATCTATCACAAATCTGATTCCGTATGCCCCTCCGGCGCTCCAAATCAGCAC
                      ____________________________________________________________
consensus TTCCTCTCTATCTATCACAAATCTGATTCCGTATGCCCCTCCGGCGCTCCAAATCAGCAC
 
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JMSF012L12+ CACCGCCGCCGCCACGGCTGCCCAACCTCCCGACGGAAAAACTCGCACCATTTCTGGAAA
rJMSF038I11- CACCGCCGCCGCCACGGCTGCCCAACCTCCCGACGGAAAAACTCGCACCATTTCTGGAAA
JMSF038I11+ CACCGCCGCCGCCACGGCTGCCCAACCTCCCGACGGAAAAACTCGCACCATTTCTGGAAA
                      ____________________________________________________________
consensus CACCGCCGCCGCCACGGCTGCCCAACCTCCCGACGGAAAAACTCGCACCATTTCTGGAAA
 
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JMSF012L12+ AAAACGATGTGTTCCTCGAACGGCGAAAGAGGATTCGAAACCTTGAAACTGTTGATAGAT
rJMSF038I11- AAAACGATGTGTTCCTCGAACGGCGAAAGAGGATTCGAAACCTTGAAACTGTTGATAGAT
JMSF038I11+ AAAACGATGTGTTCCTCGAACGGCGAAAGAGGATTCGAAACCTTGAAACTGTTGATAGAT
                      ____________________________________________________________
consensus AAAACGATGTGTTCCTCGAACGGCGAAAGAGGATTCGAAACCTTGAAACTGTTGATAGAT
 
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JMSF012L12+ TTGACCAAGTT
rJMSF038I11- TTGACCAAGTTAAGGTTGTGAACACCTCA
JMSF038I11+ TTGACCAAGTTAAGGTTGTGAACACCTCAATTGTCTTTACAATCCAAACCGTGAGTCCTA
                      ____________________________________________________________
consensus TTGACCAAGTTAAGGTTGTGAACACCTCAATTGTCTTTACAATCCAAACCGTGAGTCCTA
 
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JMSF038I11+ GTCACTCGTACTTGCCCGTGAAACTCTGCTCCGACACAAATTATTGTTCTACACTATCTC
                      ____________________________________________________________
consensus GTCACTCGTACTTGCCCGTGAAACTCTGCTCCGACACAAATTATTGTTCTACACTATCTC