Contig 005212:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004D13Sequence349005212 (4)390007180 (5)ref|XP_010649126.1|4e-19PREDICTED: transmembrane protein 53 [Vitis vinifera]
JMSF013J14Sequence552005212 (4)ref|XP_004232422.1|4e-26PREDICTED: transmembrane protein 53 [Solanum lycopersicum]761007180 (5)ref|XP_011099637.1|4e-71PREDICTED: transmembrane protein 53 [Sesamum indicum]
JMSF035P23Sequence648005212 (4)ref|XP_004232422.1|1e-41PREDICTED: transmembrane protein 53 [Solanum lycopersicum]526007180 (5)ref|XP_011099637.1|3e-37PREDICTED: transmembrane protein 53 [Sesamum indicum]
JMSF036P23Sequence648005212 (4)ref|XP_004232422.1|1e-41PREDICTED: transmembrane protein 53 [Solanum lycopersicum]522007180 (5)ref|XP_011099637.1|1e-36PREDICTED: transmembrane protein 53 [Sesamum indicum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF035P23+ ACTGCGACACCCACGATGCGAGCTCATGAGCCACTGATACAACCCTCT
JMSF036P23+ ACTGCGACACCCACGATGCGAGCTCATGAGCCACTGATACAACCCTCT
                      ____________________________________________________________
consensus ACTGCGACACCCACGATGCGAGCTCATGAGCCACTGATACAACCCTCT
 
. : . : . : . : . : . :
JMSF035P23+ CCTCGAGTTTCCTCGCTAAATCGAACGAAAGGACATCTCTCACCGAAGCTACGAACGTAA
JMSF013J14+ AGCTACGAACGTAA
JMSF036P23+ CCTCGAGTTTCCTCGCTAAATCGAACGAAAGGACATCTCTCACCGAAGCTACGAACGTAA
                      ____________________________________________________________
consensus CCTCGAGTTTCCTCGCTAAATCGAACGAAAGGACATCTCTCACCGAAGCTACGAACGTAA
 
. : . : . : . : . : . :
JMSF035P23+ CCGCGTGAATACCCTTGGAATTATACAACTCCGCATACCTCCTCAAGTGCTTAGGCTTCG
JMSF013J14+ CCGCGTGAATACCCTTGGAATTATACAACTCCGCATACCTCCTCAAGTGCTTAGGCTTCG
JMSF036P23+ CCGCGTGAATACCCTTGGAATTATACAACTCCGCATACCTCCTCAAGTGCTTAGGCTTCG
                      ____________________________________________________________
consensus CCGCGTGAATACCCTTGGAATTATACAACTCCGCATACCTCCTCAAGTGCTTAGGCTTCG
 
. : . : . : . : . : . :
JMSF035P23+ CCCCAAGCCAACCCAGCAAGACCACAGTCACCACCGGGCCGTCCTTTCCCAGACCCCGAA
JMSF013J14+ CCCCAAGCCAACCCAGCAAGACCACAGTCACCACCGGGCCGTCCTTTCCCAGACCCCGAA
JMSF036P23+ CCCCAAGCCAACCCAGCAAGACCACAGTCACCACCGGGCCGTCCTTTCCCAGACCCCGAA
                      ____________________________________________________________
consensus CCCCAAGCCAACCCAGCAAGACCACAGTCACCACCGGGCCGTCCTTTCCCAGACCCCGAA
 
. : . : . : . : . : . :
JMSF035P23+ TTCCGCGCCCCTTTTCGCCATCCGAAGCGAAATGCCAATCGAGGGGCGTGCCTTTGGGGT
JMSF013J14+ TTCCGCGCCCCTTTTCGCCATCCGAAGCGAAATGCCAATCGAGGGGCGTGCCTTTGGGGT
JMSF004D13+ GT
JMSF036P23+ TTCCGCGCCCCTTTTCGCCATCCGAAGCGAAATGCCAATCGAGGGGCGTGCCTTTGGGGT
                      ____________________________________________________________
consensus TTCCGCGCCCCTTTTCGCCATCCGAAGCGAAATGCCAATCGAGGGGCGTGCCTTTGGGGT
 
. : . : . : . : . : . :
JMSF035P23+ TAGAAGAAATACGGGCGAAACGGTCGGAGGAGAATATGGAACTGAGAATTTGCGAATGGG
JMSF013J14+ TAGAAGAAATACGGGCGAAACGGTCGGAGGAGAATATGGAACTGAGAATTTGCGAATGGG
JMSF004D13+ TAGAAGAAATACGGGCGAAACGTTCGGAGGAGAATATGGAACTGAGAATTTGCGAATGGG
JMSF036P23+ TAGAAGAAATACGGGCGAAACGGTCGGAGGAGAATATGGAACTGAGAATTTGCGAATGGG
                      ____________________________________________________________
consensus TAGAAGAAATACGGGCGAAACGGTCGGAGGAGAATATGGAACTGAGAATTTGCGAATGGG
 
. : . : . : . : . : . :
JMSF035P23+ AAAGCAGCGGGGATGAAGGGATTGAAGGCAAGGCGTTCGACGATTTGCCAATATGGAGGC
JMSF013J14+ AAAGCAGCGGGGATGAAGGGATTGAAGGCAAGGCGTTCGACGATTTGCCAATATGGAGGC
JMSF004D13+ AAAGCAGCGGGGATGAAGGGATTGAAGGCAAGGCGTTCGACGATTTGCCAATATGGAGGC
JMSF036P23+ AAAGCAGCGGGGATGAAGGGATTGAAGGCAAGGCGTTCGACGATTTGCCAATATGGAGGC
                      ____________________________________________________________
consensus AAAGCAGCGGGGATGAAGGGATTGAAGGCAAGGCGTTCGACGATTTGCCAATATGGAGGC
 
. : . : . : . : . : . :
JMSF035P23+ CATTGTACGTGGAAAGTGAGAGACGGGATGCTGAAGCTGGACGGTGACGATGTGGAATTG
JMSF013J14+ CATTGTACGTGGAAAGTGAGAGACGGGATGCTGAAGCTGGACGGTGACGATGTGGAATTG
JMSF004D13+ CATTGTACGTGGAAAGTGAGAGACGGGATGCTGAAGCTGGACGGTGACGATGTGGAATTG
JMSF036P23+ CATTGTACGTGGAAAGTGAGAGACGGGATGCTGAAGCTGGACGGTGACGATGTGGAATTG
                      ____________________________________________________________
consensus CATTGTACGTGGAAAGTGAGAGACGGGATGCTGAAGCTGGACGGTGACGATGTGGAATTG
 
. : . : . : . : . : . :
JMSF035P23+ TGGAAATATGTTTGGGGGAGAAGCTCTGAGAAGGGGTTCGGAGGAGGAGAGGGACGGAGA
JMSF013J14+ TGGAAATATGTTTGGGGGAGAAGCTCTGAGAAGGGGTTCGGAGGAGGAGAGGGACGGAGA
JMSF004D13+ TGGAAATATGTTTGGGGGAGAAGCTCTGAGAAGGGGTTCGGAGGAGGAGAGGGACGGAGA
JMSF036P23+ TGGAAATATGTTTGGGGGAGAAGCTCTGAGAAGGGGTTCGGAGGAGGAGAGGGACGGAGA
                      ____________________________________________________________
consensus TGGAAATATGTTTGGGGGAGAAGCTCTGAGAAGGGGTTCGGAGGAGGAGAGGGACGGAGA
 
. : . : . : . : . : . :
JMSF035P23+ TGTGGCGGTGGGAGGAGGCGGCTAGTCGAAGGGTGGCTTCCATCACCGTCGGCGATGTGA
JMSF013J14+ TGTGGCGGTGGGAGGAGGCGGCTAGTCGAAGGGTGGCTTCCATCACCGTCGGCGATGTGA
JMSF004D13+ TGTGGCGGTGGGAGGAGGCGGCTAGTCGAAGGGTGGCTTCCATCACCGTCGGCGATGTGA
JMSF036P23+ TGTGGCGGTGGGAGGAGGCGGCTAGTCGAAGGGTGGCTTCCATCACCGTCGGCGATGTGA
                      ____________________________________________________________
consensus TGTGGCGGTGGGAGGAGGCGGCTAGTCGAAGGGTGGCTTCCATCACCGTCGGCGATGTGA
 
. : . : . : . : . : . :
JMSF035P23+ TCAACAGAAATAGTTAAGGCGATGTGAAGAAGACTTTGGCGCGACTGCGGCGTCGTT
JMSF013J14+ TCAACAGAAATAGTTAAGGCGATGTGAAGAAGACTTTGGCGCGACTGCGGCGTCGTT
JMSF004D13+ TCAACAGAAATAGTTAAGGCGATGTGAAGAAGACTTTGGCGCGAC
JMSF036P23+ TCAACAGAAATAGTTAAGGCGATGTGAAGAAGACTTTGGCGCGACTGCGGCGTCGTTATC
                      ____________________________________________________________
consensus TCAACAGAAATAGTTAAGGCGATGTGAAGAAGACTTTGGCGCGACTGCGGCGTCGTTATC