Contig 005208:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF032H21Sequence555005208 (2)ref|XP_009803666.1|4e-62PREDICTED: serine/threonine-protein kinase STN7, chloroplastic-like isoform X2 731012350 (3)ref|XP_006345732.1|2e-124PREDICTED: serine/threonine-protein kinase STN7, chloroplastic-like [Solanum tu
JMSF036M02Sequence674005208 (2)ref|XP_009803666.1|1e-76PREDICTED: serine/threonine-protein kinase STN7, chloroplastic-like isoform X2 695012350 (3)ref|XP_006345732.1|4e-121PREDICTED: serine/threonine-protein kinase STN7, chloroplastic-like [Solanum tu

Alignment

This contig is upended


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JMSF036M02+                                                         AGCTCCATATTCAG
                      ____________________________________________________________
consensus                                                           AGCTCCATATTCAG
 
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JMSF036M02+           TTGCCTTTTTCAGGACTAAATCACCATCCTTGGGCTTTGAGGGCTTGTTTGCCAAGGAAA
                      ____________________________________________________________
consensus             TTGCCTTTTTCAGGACTAAATCACCATCCTTGGGCTTTGAGGGCTTGTTTGCCAAGGAAA
 
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JMFF032H21+                   ACGGAGCCAAAAGATCCCTCTCCCAACTTCTTCCCCAACACAATATCATCCT
JMSF036M02+           CTCTATAAACGGAGCCAAAAGATCCCTCTCCCAACTTCTTCCCCAACACAATATCATCCT
                      ____________________________________________________________
consensus             CTCTATAAACGGAGCCAAAAGATCCCTCTCCCAACTTCTTCCCCAACACAATATCATCCT
 
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JMFF032H21+           TCTTAAAGCTAGGTCTATATAGTCTTTCAATAAAGGCAAGAACAAACATATCAAAGAACC
JMSF036M02+           TCTTAAAGCTAGGTCTATATAGTCTTTCAATAAAGGCAAGAACAAACATATCAAAGAACC
                      ____________________________________________________________
consensus             TCTTAAAGCTAGGTCTATATAGTCTTTCAATAAAGGCAAGAACAAACATATCAAAGAACC
 
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JMFF032H21+           CAGGGGCCACACCAGGGGTAGCCCAGAGGTAAGACAGAGTTCCCAAAGCTAAAATCACCC
JMSF036M02+           CAGGGGCCACACCAGGGGTAGCCCAGAGGTAAGACAGAGTTCCCAAAGCTAAAATCACCC
                      ____________________________________________________________
consensus             CAGGGGCCACACCAGGGGTAGCCCAGAGGTAAGACAGAGTTCCCAAAGCTAAAATCACCC
 
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JMFF032H21+           CAGGGACAGTGATTGTGAGCCCAGTGGATTTGGGCAGAGTGCTCCTGTATATTATGTCCC
JMSF036M02+           CAGGGACAGTGATTGTGAGCCCAGTGGATTTGGGCAGAGTGCTCCTGTATATTATGTCCC
                      ____________________________________________________________
consensus             CAGGGACAGTGATTGTGAGCCCAGTGGATTTGGGCAGAGTGCTCCTGTATATTATGTCCC
 
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JMFF032H21+           CACACTGCATAACCGTGCAGGGAAGCCCAACCCCAACGCCCAGAAATACATCGTGTAGAA
JMSF036M02+           CACACTGCATAACCGTGCAGGGAAGCCCAACCCCAACGCCCAGAAATACATCGTGTAGAA
                      ____________________________________________________________
consensus             CACACTGCATAACCGTGCAGGGAAGCCCAACCCCAACGCCCAGAAATACATCGTGTAGAA
 
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JMFF032H21+           AGCTGAAGCTTTCGCCTCCAACCGCGAAAACCACAAGATTATTTCTTGATCTTGAAGCCG
JMSF036M02+           AGCTGAAGCTTTCGCCTCCAACCGCGAAAACCACAAGATTATTTCTTGATCTTGAAGCCG
                      ____________________________________________________________
consensus             AGCTGAAGCTTTCGCCTCCAACCGCGAAAACCACAAGATTATTTCTTGATCTTGAAGCCG
 
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JMFF032H21+           GCCTTGGGGAGAAACTGAAGGGTTTGAATCTGGGTGCGAGTTTTTTGCCAAGAAATGAAG
JMSF036M02+           GCCTTGGGGAGAAACTGAAGGGTTTGAATCTGGGTGCGAGTTTTTTGCCAAGAAATGAAG
                      ____________________________________________________________
consensus             GCCTTGGGGAGAAACTGAAGGGTTTGAATCTGGGTGCGAGTTTTTTGCCAAGAAATGAAG
 
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JMFF032H21+           AGAGAGATGAGGGTTTGATGACTGGGTTCTTGAGAGTGTGGAGTCCAACCCCACCAGGGG
JMSF036M02+           AGAGAGATGAGGGTTTGATGACTGGGTTCTTGAGAGTGTGGAGTCCAACCCCACCAGGGG
                      ____________________________________________________________
consensus             AGAGAGATGAGGGTTTGATGACTGGGTTCTTGAGAGTGTGGAGTCCAACCCCACCAGGGG
 
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JMFF032H21+           AAACTGCAGCAGCCATGGCCGTTGTTATCGTTGTGGTGTTTTGAGTAGAGTCATCAGAGT
JMSF036M02+           AAACTGCAGCAGCCATGGCCGTTGTTATCGTTGTGGTGTTTTGAGTAGAGTCATCAGAGT
                      ____________________________________________________________
consensus             AAACTGCAGCAGCCATGGCCGTTGTTATCGTTGTGGTGTTTTGAGTAGAGTCATCAGAGT
 
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JMFF032H21+           TGTATGTATATGCTGTGCAGCCT                                     
JMSF036M02+           TGTATGTATATGCTGTGCAGCCTGTGGTTTGGGTTTTTCTTGAAATTCACTTCTTTCTTC
                      ____________________________________________________________
consensus             TGTATGTATATGCTGTGCAGCCTGTGGTTTGGGTTTTTCTTGAAATTCACTTCTTTCTTC