Contig 005203:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF019P16Sequence445005203 (2)ref|XP_007049697.1|2e-10Uncharacterized protein TCM_002832 [Theobroma cacao] gb|EOX93854.1| Uncharacteri764007095 (2)ref|XP_009791763.1|138PREDICTED: uncharacterized protein LOC104238943 [Nicotiana sylvestris]
JMSF035O20Sequence582005203 (2)emb|CDP03908.1|9e-12unnamed protein product [Coffea canephora]393007095 (2)gb|KJB08804.1|2e-06hypothetical protein B456_001G104900 [Gossypium raimondii]

Alignment

This contig is upended


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JMSF035O20+                             CCTCCTCCATTGAATCTTCCACTAAACTCTGTTCCGAGAATT
                      ____________________________________________________________
consensus                               CCTCCTCCATTGAATCTTCCACTAAACTCTGTTCCGAGAATT
 
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JMSF035O20+           GGGCTTGGCTTTCTTGAACATCCATTAAAGGACCCTCAAACACAATCTTGTAAGCTTCAA
                      ____________________________________________________________
consensus             GGGCTTGGCTTTCTTGAACATCCATTAAAGGACCCTCAAACACAATCTTGTAAGCTTCAA
 
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JMSF019P16+               CTCCAAATCAAAACACTCCTGGGTTCCATCCTCAACCACAGCATGACAAGCAGAGA
JMSF035O20+           AATCCTCCAAATCAAAACACTCCTGGGTTCCATCCTCAACCNCAGCATGACAAGCAGAGA
                      ____________________________________________________________
consensus             AATCCTCCAAATCAAAACACTCCTGGGTTCCATCCTCAACCACAGCATGACAAGCAGAGA
 
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JMSF019P16+           GCAGATCACCAACCTTGCCGTGGGCAATCAAGCCCGGAGAGACTGTAAGAAAGGCAAGGA
JMSF035O20+           GCAGATCACCAACCTTGCCGTGGGCAATCAAGCCCGGAGAGACTGTAAGAAAGGCAAGGA
                      ____________________________________________________________
consensus             GCAGATCACCAACCTTGCCGTGGGCAATCAAGCCCGGAGAGACTGTAAGAAAGGCAAGGA
 
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JMSF019P16+           GCAAGAGGGAAGTGGTGAAGACAAGAGGGAAGAGAAAGGAGACGATTTTGAAGAGATAAG
JMSF035O20+           GCAAGAGGGAAGTGGTGAAGACAAGAGGGAAGAGAAAGGAGACGATTTTGAAGAGATAAG
                      ____________________________________________________________
consensus             GCAAGAGGGAAGTGGTGAAGACAAGAGGGAAGAGAAAGGAGACGATTTTGAAGAGATAAG
 
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JMSF019P16+           GGGAGAAGAAGACAAAGTATGACAAGTATAGAGGGTGAGAGAAGAGGAAAGAACAGAATC
JMSF035O20+           GGGAGAAGAAGACAAAGTATGACAAGTATAGAGGGTGAGAGAAGAGGAAAGAACAGAGTC
                      ____________________________________________________________
consensus             GGGAGAAGAAGACAAAGTATGACAAGTATAGAGGGTGAGAGAAGAGGAAAGAACAGAGTC
 
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JMSF019P16+           GCTTCAAGTCAGAGATGAGAAGACTGGAAAACCAAGTCTTCCATGGCAGGCACAGCTCCG
JMSF035O20+           GCTTCAAGTCAGAGATGAGAAGACTGGAAAACCAAGTCTTCCATGGCAGGCACAGCTCCG
                      ____________________________________________________________
consensus             GCTTCAAGTCAGAGATGAGAAGACTGGAAAACCAAGTCTTCCATGGCAGGCACAGCTCCG
 
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JMSF019P16+           ACATTTCTGCAGCAATGGAATTGAAAAATGGGGAGAAGAATCTGATTATCTTTGGTCAAG
JMSF035O20+           ACATTTCTGCAGCAATGGAATTGAAAAATGGGGAGAAGANTCTGATTATCTTTGGTCAAG
                      ____________________________________________________________
consensus             ACATTTCTGCAGCAATGGAATTGAAAAATGGGGAGAAGAATCTGATTATCTTTGGTCAAG
 
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JMSF019P16+           ATGGGGAAAGAAGAGAGAAATGTGGAAGTGTGATGGGAGCAAATGCGGCGTGAATAAAGG
JMSF035O20+           ATGGGGAAAGAAGAGAGAAATGTGGAAGTGTGATGGGAGCAAATGCGGCGTGAATAAAGG
                      ____________________________________________________________
consensus             ATGGGGAAAGAAGAGAGAAATGTGGAAGTGTGATGGGAGCAAATGCGGCGTGAATAAAGG
 
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JMSF019P16+           AGGGAAATAGGAGGCAGGAAGAGTCATC                                
JMSF035O20+           AGGGAAATAGGAGGCAGGAAGAGTCATCAATGGAGTGTAAGGAGGGTGAGAGATTAACTC
                      ____________________________________________________________
consensus             AGGGAAATAGGAGGCAGGAAGAGTCATCAATGGAGTGTAAGGAGGGTGAGAGATTAACTC