Contig 005182:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF032L07Sequence693005182 (2)gb|KJB47589.1|1e-51hypothetical protein B456_008G032600 [Gossypium raimondii]620005182 (2)gb|KJB47589.1|7e-52hypothetical protein B456_008G032600 [Gossypium raimondii]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF032L07+ GCGCTAGTCTTCACATTCTTGCATTCTTTCTTC
JMSF032L07- GCGCTAGTCTTCACATTCTTGCATTCTTTCTTC
                      ____________________________________________________________
consensus GCGCTAGTCTTCACATTCTTGCATTCTTTCTTC
 
. : . : . : . : . : . :
rJMSF032L07+ TCATTCAATCCTAAATATAATATAATATAATATTATATTCCAAACTTAATAAAATAAAAT
JMSF032L07- TCATTCAATCCTAAATATAATATAATATAATATTATATTCCAAACTTAATAAAATAAAAT
                      ____________________________________________________________
consensus TCATTCAATCCTAAATATAATATAATATAATATTATATTCCAAACTTAATAAAATAAAAT
 
. : . : . : . : . : . :
rJMSF032L07+ AAAAAGAAAAGTGGGAATGAGAAAATCAAGCAAGCTTCCTCAAGCTGCGGTTCTAAAGCA
JMSF032L07- AAAAAGAAAAGTGGGAATGAGAAAATCAAGCAAGCTTCCTCAAGCTGCGGTTCTAAAGCA
                      ____________________________________________________________
consensus AAAAAGAAAAGTGGGAATGAGAAAATCAAGCAAGCTTCCTCAAGCTGCGGTTCTAAAGCA
 
. : . : . : . : . : . :
rJMSF032L07+ GATGATCAGAAGGTGCTCCAGTCAGTTCAAGCAGAAACACGGGTACGCCGGCGACGACCT
JMSF032L07- GATGATCAGAAGGTGCTCCAGTCAGTTCAAGCAGAAACACGGGTACGCCGGCGACGACCT
                      ____________________________________________________________
consensus GATGATCAGAAGGTGCTCCAGTCAGTTCAAGCAGAAACACGGGTACGCCGGCGACGACCT
 
. : . : . : . : . : . :
rJMSF032L07+ TCCGGTGGACGTGCCGAAAGGGCATTTCGCAGTCTACGTCGGCGAAAACAGAAGCAGATA
JMSF032L07- TCCGGTGGACGTGCCGAAAGGGCATTTCGCAGTCTACGTCGGCGAAAACAGAAGCAGATA
                      ____________________________________________________________
consensus TCCGGTGGACGTGCCGAAAGGGCATTTCGCAGTCTACGTCGGCGAAAACAGAAGCAGATA
 
. : . : . : . : . : . :
rJMSF032L07+ CATAGTACCAATCTCGTTCTTGGATCACCCCCAGTTTCAATGTCTCCTCAGACGCGCCGA
JMSF032L07- CATAGTACCAATCTCGTTCTTGGATCACCCCCAGTTTCAATGTCTCCTCAGACGCGCCGA
                      ____________________________________________________________
consensus CATAGTACCAATCTCGTTCTTGGATCACCCCCAGTTTCAATGTCTCCTCAGACGCGCCGA
 
. : . : . : . : . : . :
rJMSF032L07+ GGAAGAGTTCGGATTCCATCACGAAATGGGCATCACCATTCCCTGCGACGAGATGGCTTT
JMSF032L07- GGAAGAGTTCGGATTCCATCACGAAATGGGCATCACCATTCCCTGCGACGAGATGGCTTT
                      ____________________________________________________________
consensus GGAAGAGTTCGGATTCCATCACGAAATGGGCATCACCATTCCCTGCGACGAGATGGCTTT
 
. : . : . : . : . : . :
rJMSF032L07+ CCGATCGCTCACGGCAATGCTCCGGTAGACTCACCTCCAACTCTATATTTATATATATGT
JMSF032L07- CCGATCGCTCACGGCAATGCTCCGGTAGACTCACCTCCAACTCTATATTTATATATATGT
                      ____________________________________________________________
consensus CCGATCGCTCACGGCAATGCTCCGGTAGACTCACCTCCAACTCTATATTTATATATATGT
 
. : . : . : . : . : . :
rJMSF032L07+ GTGTGTGTATATATGAAGACTTTGCGCGGAGAAGATGGCTGCTTAAGATGAAGCTCTGAT
JMSF032L07- GTGTGTGTATATATGAAGACTTTGCGCGGAGAAGATGGCTGCTTAAGATGAAGCTCTGAT
                      ____________________________________________________________
consensus GTGTGTGTATATATGAAGACTTTGCGCGGAGAAGATGGCTGCTTAAGATGAAGCTCTGAT
 
. : . : . : . : . : . :
rJMSF032L07+ CTGATCGGTCTGATCTGTGTTTAGCTTTTATCTTTTTTCAACGTCTTAATTCCTTCGCCG
JMSF032L07- CTGATCGGTCTGATCTGTGTTTAGCTTTTATCTTTTTTCAACGTCTTAATTCCTTCGCCG
                      ____________________________________________________________
consensus CTGATCGGTCTGATCTGTGTTTAGCTTTTATCTTTTTTCAACGTCTTAATTCCTTCGCCG
 
. : . : . : . : . : . :
rJMSF032L07+ GAGTATATTGTTTTAGATTTCTTGTAAGTTGCAAATTTTCCCGAGCT
JMSF032L07- GAGTATATTGTTTTAGATTTCTTGTAAGTTGCAAATTTTCCCGAGCTCATTTTGGGTCAA
                      ____________________________________________________________
consensus GAGTATATTGTTTTAGATTTCTTGTAAGTTGCAAATTTTCCCGAGCTCATTTTGGGTCAA
 
. : . : . : . : . : . :
JMSF032L07- TCACCTCTAATTTGCCCGGCCGATCCCATTTCATGTTGTTTATGGGTTCTTCTTAATTTG
                      ____________________________________________________________
consensus TCACCTCTAATTTGCCCGGCCGATCCCATTTCATGTTGTTTATGGGTTCTTCTTAATTTG