clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF008C10 | Sequence | 564 | 005177 (5) | ref|XP_004228630.1| | 7e-99 | PREDICTED: cysteine protease ATG4 isoform X2 [Solanum lycopersicum] | 778 | 013683 (5) | ref|XP_009588897.1| | 6e-95 | PREDICTED: cysteine protease ATG4-like isoform X2 [Nicotiana tomentosiformis] |
JMFF008L01 | Sequence | 545 | 005177 (5) | ref|XP_009761431.1| | 4e-96 | PREDICTED: cysteine protease ATG4-like isoform X2 [Nicotiana sylvestris] | 655 | 013683 (5) | ref|XP_009588897.1| | 7e-79 | PREDICTED: cysteine protease ATG4-like isoform X2 [Nicotiana tomentosiformis] |
JMFF018D07 | Sequence | 570 | 005177 (5) | ref|XP_009761431.1| | 1e-17 | PREDICTED: cysteine protease ATG4-like isoform X2 [Nicotiana sylvestris] | 500 | 013683 (5) | ref|XP_009588897.1| | 8e-20 | PREDICTED: cysteine protease ATG4-like isoform X2 [Nicotiana tomentosiformis] |
JMFF039C07 | Sequence | 473 | 005177 (5) | ref|XP_009761430.1| | 3e-11 | PREDICTED: cysteine protease ATG4-like isoform X1 [Nicotiana sylvestris] | 691 | 013683 (5) | ref|XP_009761431.1| | 8e-81 | PREDICTED: cysteine protease ATG4-like isoform X2 [Nicotiana sylvestris] |
JMSF032G07 | Sequence | 622 | 005177 (5) | ref|XP_009761431.1| | 5e-20 | PREDICTED: cysteine protease ATG4-like isoform X2 [Nicotiana sylvestris] | 740 | 013683 (5) | ref|XP_009588897.1| | 4e-83 | PREDICTED: cysteine protease ATG4-like isoform X2 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
JMFF008L01+ TTACAGCACGCCAGTGTTTCCCATGTGCGACACAT
JMFF008C10+ GCATTTTCAGCGTCCTCTCTCTTACAGCACGCCAGTGTTTCCCATGTGCGACACAT
____________________________________________________________
consensus GCATTTTCAGCGTCCTCTCTCTTACAGCACGCCAGTGTTTCCCATGTGCGACACAT
. : . : . : . : . : . :
JMFF008L01+ TGCATATGGGCCAACCCACGAACCAGGGGAAAGATCATATGCCTTTCCAGCTTGAAGAAG
JMFF008C10+ TGCATATGGGCCAACCCACGAACCAGGGGAAAGATCATATGCCTTTCCAGCTTGAAGAAG
____________________________________________________________
consensus TGCATATGGGCCAACCCACGAACCAGGGGAAAGATCATATGCCTTTCCAGCTTGAAGAAG
. : . : . : . : . : . :
JMFF008L01+ GTTGTGGATAGAGTAAGCAGATTCCTCTGAATCACCAAAAAGGTTCAATATCTCCAAATA
JMFF008C10+ GTTGTGGATAGAGTAAGCAGATTCCTCTGAATCACCAAAAAGGTTCAATATCTCCAAATA
____________________________________________________________
consensus GTTGTGGATAGAGTAAGCAGATTCCTCTGAATCACCAAAAAGGTTCAATATCTCCAAATA
. : . : . : . : . : . :
JMFF008L01+ ATTTTGCTCAAGCAACTTCTCCAAAGACTTCCTCCATGATCTTCCGAGTCGATGGAAAAG
JMFF008C10+ ATTTTGCTCAAGCAACTTCTCCAAAGACTTCCTCCATGATCTTCCGAGTCGATGGAAAAG
____________________________________________________________
consensus ATTTTGCTCAAGCAACTTCTCCAAAGACTTCCTCCATGATCTTCCGAGTCGATGGAAAAG
. : . : . : . : . : . :
JMFF008L01+ CAATGCCTGAGCAACAAGCATCTGACTGCTTCGAAGCATGCAACCCCAACCTGAATCATT
JMFF008C10+ CAATGCCTGAGCAACAAGCATCTGACTGCTTCGAAGCATGCAACCCCAACCTGAATCATT
____________________________________________________________
consensus CAATGCCTGAGCAACAAGCATCTGACTGCTTCGAAGCATGCAACCCCAACCTGAATCATT
. : . : . : . : . : . :
JMFF008L01+ AGTATATTTGGACTCTCCTATGGGGGCAAACCCTTTACGGTAAGTGATTAAGATCCTGGA
JMFF008C10+ AGTATATTTGGACTCTCCTATGGGGGCAAACCCTTTACGGTAAGTGATTAAGATCCTGGA
____________________________________________________________
consensus AGTATATTTGGACTCTCCTATGGGGGCAAACCCTTTACGGTAAGTGATTAAGATCCTGGA
. : . : . : . : . : . :
JMFF008L01+ TGAGAAATCTTCGACAAACGAAGCAAATCCCTGGCTCTGAGTCGGATCGGTGGATGGACT
JMFF008C10+ TGAGAAATCTTCGACAAACGAAGCAAATCCCTGGCTCTGAGTCGGATCGGTGGATGGACT
JMFF018D07+ ATCGGTGGATGGACT
JMSF032G07+ ATCGGTGGATGGACT
____________________________________________________________
consensus TGAGAAATCTTCGACAAACGAAGCAAATCCCTGGCTCTGAGTCGGATCGGTGGATGGACT
. : . : . : . : . : . :
JMFF008L01+ ATCATCTTGAGCAACTTTATAGCAGCAGCCGAGAAGCCAAATGTCAGTATTGGAGACTGA
JMFF008C10+ ATCATCTTGAGCAACTTTATAGCAGCAGCCGAGAAGCCAAATGTCAGTATTGGAGACTGA
JMFF018D07+ ATCATCTTGAGCAACTTTATAGCAGCAGCCGAGAAGCCAAATGTCAGTATTGGAGACTGA
JMFF039C07+ GAGAAGCCAAANGTCAGTATTGGAGCCTGA
JMSF032G07+ ATCATCTTGAGCAACTTTATAGCAGCAGCCGAGAAGCCAAATGTCAGTATTGGAGACTGA
____________________________________________________________
consensus ATCATCTTGAGCAACTTTATAGCAGCAGCCGAGAAGCCAAATGTCAGTATTGGAGACTGA
. : . : . : . : . : . :
JMFF008L01+ GGGAATCCCAGTTTTGTTTAAACCTAAAATTCTCCACACAGAGCCACTGTTCATCGCTCT
JMFF008C10+ GGGAATCCCAGTTTTGTTTAAACCTAAAATTCTCCACACAGAGCCACTGTTCATCGCTCT
JMFF018D07+ GGGAATCCCAGTTTTGTTTAAACCTAAAATTCTCCACACAGAGCCACTGTTCATCGCTCT
JMFF039C07+ GGGAATCCCAGTTTTGTTTAANCCTAAAATTCTCCACACAGAGCCACTGTTCATCGCTCT
JMSF032G07+ GGGAATCCCAGTTTTGTTTAAACCTAAAATTCTCCACACAGAGCCACTGTTCATCGCTCT
____________________________________________________________
consensus GGGAATCCCAGTTTTGTTTAAACCTAAAATTCTCCACACAGAGCCACTGTTCATCGCTCT
. : . : . : . : . : . :
JMFF008L01+ TCTCAAAGCCGAAGTCCAACCAATCGC
JMFF008C10+ TCTCAAAGCCGAAGTCCAACCAATCGC
JMFF018D07+ TCTCAAAGCCGAAGTCCAACCAATCGCATAATGCTTTGGTATCAAACTAGACGCCCCTTT
JMFF039C07+ TCTCAAAGCCGAAGTCCAACCAATCGCATAATGCTTTGGTATCAAACTAGACGCCCCTTT
JMSF032G07+ TCTCAAAGCCGAAGTCCAACCAATCGCATAATGCTTTGGTATCAAACTAGACGCCCCTTT
____________________________________________________________
consensus TCTCAAAGCCGAAGTCCAACCAATCGCATAATGCTTTGGTATCAAACTAGACGCCCCTTT
. : . : . : . : . : . :
JMFF018D07+ TCTTGGAGACTCTTTCGAGTGCTCAGCTGCCGTAGCACCCGAGCTTGAGAACGCAGATAC
JMFF039C07+ TCTTGGAGACCCTTTCGAGTGCTCAGCTGCCGTAGCACCCGAGCTTGAGAACGCAGATAC
JMSF032G07+ TCTTGGAGACCCTTTCGAGTGCTCAGCTGCCGTAGCACCCGAGCTTGAGAACGCAGATAC
____________________________________________________________
consensus TCTTGGAGACCCTTTCGAGTGCTCAGCTGCCGTAGCACCCGAGCTTGAGAACGCAGATAC
. : . : . : . : . : . :
JMFF018D07+ CCTAAAGCCCGACCAAAAAGAATGCCTTTGCTCTGCCGAAGAAGATGAAGCAAAACTGGG
JMFF039C07+ CCTAAAGCCCGACCAAAAAGAATGCCTTTGCTCTGCCGAAGAAGATGAAGCAAAACTGGG
JMSF032G07+ CCTAAAGCCCGACCAAAAAGAATGCCTTTGCTCTGCCGAAGAAGATGAAGCAAAACTGGG
____________________________________________________________
consensus CCTAAAGCCCGACCAAAAAGAATGCCTTTGCTCTGCCGAAGAAGATGAAGCAAAACTGGG
. : . : . : . : . : . :
JMFF018D07+ CCCCGAACCCGGAACCCTATCGGGCGAATTGGAATCGGAGAAACTTCTGCTGATGCTTCC
JMFF039C07+ CCCCGAACCCGGAACCCTATCGGGCGAATTGGAATCGGAGAAACTTCTGCTGATGCTTCC
JMSF032G07+ CCCCGAACCCGGAACCCTATCGGGCGAATTGGAATCGGAGAAACTTCTGCTGATGCTTCC
____________________________________________________________
consensus CCCCGAACCCGGAACCCTATCGGGCGAATTGGAATCGGAGAAACTTCTGCTGATGCTTCC
. : . : . : . : . : . :
JMFF018D07+ AATTATACTCTTCTTCGGCATCAAAAAGGGCACAGTAATTCAGGACATCAGGGAAACCAG
JMFF039C07+ AATTATACTCTTCTTCGGCATCAAAAAGGGCACAGTAATTCAGGACATCAGGGAAACCAG
JMSF032G07+ AATTATACTCTTCTTCGGCATCAAAAAGGGCACAGTAATTCAGGACATCAGGGAAACCAG
____________________________________________________________
consensus AATTATACTCTTCTTCGGCATCAAAAAGGGCACAGTAATTCAGGACATCAGGGAAACCAG
. : . : . : . : . : . :
JMFF018D07+ ACCCCACAAGAATTCTACTAGCTTTTCTTCTTGAAAATCAAAAACAATGATTTGAAATCG
JMFF039C07+ ACCCCACAAGAATTCTACTAGCTTTTCTTCTTGAAAATCAAAAACAATGATTTGAAATCG
JMSF032G07+ ACCCCACAAGAATTCTACTAGCTTTTCTTCTTGAAAATCAAAAACAATGATTTGAAATCG
____________________________________________________________
consensus ACCCCACAAGAATTCTACTAGCTTTTCTTCTTGAAAATCAAAAACAATGATTTGAAATCG
. : . : . : . : . : . :
JMFF018D07+ AGCAAAGATAGTTAAGTTAGATTAGAAGAAAAGAAGAGGAAGAAAAGGAGAATATTTGAA
JMFF039C07+ AGCAAAGATAGTTAAGTTAGATT
JMSF032G07+ AGCAAAGATAGTTAAGTTAGATTAGAAAAAAAGAAGAGGAAGAAAAGGAGAATATTTGAA
____________________________________________________________
consensus AGCAAAGATAGTTAAGTTAGATTAGAAGAAAAGAAGAGGAAGAAAAGGAGAATATTTGAA
. : . : . : . : . : . :
JMFF018D07+ TTGGAAGCTTGTGGT
JMSF032G07+ TTGGAAGCTTGTGGTATTTTAATGATGATGATTCTAGGTTTCGTAGTCAGCCAATGTTTC
____________________________________________________________
consensus TTGGAAGCTTGTGGTATTTTAATGATGATGATTCTAGGTTTCGTAGTCAGCCAATGTTTC