Contig 005176:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018N17Sequence584005176 (3)ref|XP_002270073.1|9e-92PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Vitis vinifera]791001196 (7)ref|XP_009788100.1|3e-27PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Nicotiana sylvestris]
JMFF044A06Sequence626005176 (3)ref|XP_002270073.1|7e-103PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Vitis vinifera]635001196 (7)
JMSF032F17Sequence670005176 (3)ref|XP_002270073.1|7e-111PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Vitis vinifera]751001196 (7)ref|XP_011033144.1|2e-138PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Populus euphratica]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF032F17+ TAAGCTGCCTT
                      ____________________________________________________________
consensus TAAGCTGCCTT
 
. : . : . : . : . : . :
JMFF044A06+ GCCGCTGAAACACAGCCCCAGTCAGAGTCTCGAGCGCC
JMFF018N17+ CAGAGTCTCGAGCGCC
JMSF032F17+ TTCACAGCAGAAATCAATGGTGGCCGCTGAAACACAGCCCCAGTCAGAGTCTCGAGCGCC
                      ____________________________________________________________
consensus TTCACAGCAGAAATCAATGGTGGCCGCTGAAACACAGCCCCAGTCAGAGTCTCGAGCGCC
 
. : . : . : . : . : . :
JMFF044A06+ CGAGCCACC-TTCGCGACATCAGGCACTGCAGAGTGCAATCGTGCAATACAGACATACTC
JMFF018N17+ CGAGCCACCTTTCGCGACATCAGGCACTGCAGAGTGCAATCGTGCAATACAGACATACTC
JMSF032F17+ CGAGCCACC-TTCGCGACATCAGGCACTGCAGAGTGCAATCGTGCAATACAGACATACTC
                      ____________________________________________________________
consensus CGAGCCACC-TTCGCGACATCAGGCACTGCAGAGTGCAATCGTGCAATACAGACATACTC
 
. : . : . : . : . : . :
JMFF044A06+ TTTTCCAGCACCCTGCTGGGATTTCACGAGCCGGGTGGCCCGATCAATACAGACAATCAA
JMFF018N17+ TTTTCCAGCACCCTGCTGGGATTTCACGAGCCGGGTGGCCCGATCAATACAGACAATCAA
JMSF032F17+ TTTTCCAGCACCCTGCTGGGATTTCACGAGCCGGGTGGCCCGATCAATACAGACAATCAA
                      ____________________________________________________________
consensus TTTTCCAGCACCCTGCTGGGATTTCACGAGCCGGGTGGCCCGATCAATACAGACAATCAA
 
. : . : . : . : . : . :
JMFF044A06+ GTTCCCCGTGACTTTCGGGTCAAGCGTGCCGCTATGACCCGTTTTCTCGACCCGCAAGAG
JMFF018N17+ GTTCCCCGTGACTTTCGGGTCAAGCGTGCCGCTATGACCCGTTTTCTCGACCCGCAAGAG
JMSF032F17+ GTTCCCCGTGACTTTCGGGTCAAGCGTGCCGCTATGACCCGTTTTCTCGACCCGCAAGAG
                      ____________________________________________________________
consensus GTTCCCCGTGACTTTCGGGTCAAGCGTGCCGCTATGACCCGTTTTCTCGACCCGCAAGAG
 
. : . : . : . : . : . :
JMFF044A06+ TCTCTTAATCCAAGCCACGACTTCATGGGACGAGGGATTCGCAGGCTTATCGAGGTTGAG
JMFF018N17+ TCTCTTAATCCAAGCCACGACTTCATGGGACGAGGGATTCGCAGGCTTATCGAGGTTGAG
JMSF032F17+ TCTCTTAATCCAAGCCACGACTTCATGGGACGAGGGATTCGCAGGCTTATCGAGGTTGAG
                      ____________________________________________________________
consensus TCTCTTAATCCAAGCCACGACTTCATGGGACGAGGGATTCGCAGGCTTATCGAGGTTGAG
 
. : . : . : . : . : . :
JMFF044A06+ AACACCGTACCTGATGTACTCGGCAAGCGGCCGCTTGAGCGGAGTGTGGCCGGAGGGAAG
JMFF018N17+ AACACCGTACCTGATGTACTCGGCAAGCGGCCGCTTGAGCGGAGTGTGGCCGGAGGGAAG
JMSF032F17+ AACACCGTACCTGATGTACTCGGCAAGCGGCCGCTTGAGCGGAGTGTGGCCGGAGGGAAG
                      ____________________________________________________________
consensus AACACCGTACCTGATGTACTCGGCAAGCGGCCGCTTGAGCGGAGTGTGGCCGGAGGGAAG
 
. : . : . : . : . : . :
JMFF044A06+ AGGAGTGTAGTGTCCGGTCCGAACATTCAACCGGTCGTAGTTCTTCAGGAGAATCGGCCA
JMFF018N17+ AGGAGTGTAGTGTCCGGTCCGAACATTCAACCGGTCGTAGTTCTTCAGGAGAATCGGCCA
JMSF032F17+ AGGAGTGTAGTGTCCGGTCCGAACATTCAACCGGTCGTAGTTCTTCAGGAGAATCGGCCA
                      ____________________________________________________________
consensus AGGAGTGTAGTGTCCGGTCCGAACATTCAACCGGTCGTAGTTCTTCAGGAGAATCGGCCA
 
. : . : . : . : . : . :
JMFF044A06+ CTGGGACGTATCAATGGAAGGAGTGAAGCTCTGTGGCTTGATGAGATAATCACCATGAAC
JMFF018N17+ CTGGGACGTATCAATGGAAGGAGTGAAGCTCTGTGGCTTGATGAGATAATCACCATGAAC
JMSF032F17+ CTGGGACGTATCAATGGAAGGAGTGAAGCTCTGTGGCTTGATGAGATAATCACCATGAAC
                      ____________________________________________________________
consensus CTGGGACGTATCAATGGAAGGAGTGAAGCTCTGTGGCTTGATGAGATAATCACCATGAAC
 
. : . : . : . : . : . :
JMFF044A06+ CTCGGTTGGTTCATTGCCGCCGGGCAAAGCTTCCGGGTCATCATTAGACTTGCTTTTCTT
JMFF018N17+ CTCGGTTGGTTCATTGCCGCCGGGCAAAGCTTCCGGGTCATCATTAGACTTGCTTTTCTT
JMSF032F17+ CTCGGTTGGTTCATTGCCGCCGGGCAAAGCTTCCGGGTCATCATTAGACTTGCTTTTCTT
                      ____________________________________________________________
consensus CTCGGTTGGTTCATTGCCGCCGGGCAAAGCTTCCGGGTCATCATTAGACTTGCTTTTCTT
 
. : . : . : . : . : . :
JMFF044A06+ CTTCTTCTTCTTCTCTGAGCGAGAGAGCTCCACATCAGTCATGGCTGCCGCCGGCTTAGT
JMFF018N17+ CTTCTTCTTCTTCTCTGAGCGAGAGAGCTCCACATCAGTCATGGCTGCCGCCGGCTTAGT
JMSF032F17+ CTTCTTCTTCTTCTCTGAGCGAGAGAGCTCCACATCAGTCATGGCTGCCGCCGGCTTAGT
                      ____________________________________________________________
consensus CTTCTTCTTCTTCTCTGAGCGAGAGAGCTCCACATCAGTCATGGCTGCCGCCGGCTTAGT
 
. : . : . : . : . : . :
JMFF044A06+ GTATAGGTGAGACCAAATGAGACACAATCACAGCCTAAGGGGAGATGTT
JMFF018N17+ GTATAGGTGAGACCAA
JMSF032F17+ GTATAGGTGAGACCAAATGAGACACAATCACAGCCTAAGGGGAGATGTTAAAAATGGACC
                      ____________________________________________________________
consensus GTATAGGTGAGACCAAATGAGACACAATCACAGCCTAAGGGGAGATGTTAAAAATGGACC