Contig 005163:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF041K14-                                  CAATTAACAAACAAATAAATATAAATTTATCTATTC
                      ____________________________________________________________
consensus                                     CAATTAACAAACAAATAAATATAAATTTATCTATTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF041K14-          CTACGAGGATGGATACCTAATACCATGGACTTCTAGGGAATGACTATTTACATTACAAGT
                      ____________________________________________________________
consensus             CTACGAGGATGGATACCTAATACCATGGACTTCTAGGGAATGACTATTTACATTACAAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF041K14-          GAAATAGCTAACTTTATAGAATTCTATTTCATGGTTTGAAAGTAATGCACCAACAAAAAT
rJMSF041P17-                                                      ATGCACCAACAAAAAT
                      ____________________________________________________________
consensus             GAAATAGCTAACTTTATAGAATTCTATTTCATGGTTTGAAAGTAATGCACCAACAAAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF041K14-          AATACAAAGTAATCAAAATCAAAAGAAATAACACTATATAAACCATTGCCTGGATGAGAT
rJMSF041P17-          AATACAAAGTAATCAAAATCAAAAGAAATAACACTATATAAACCATTGCCTGGATGAGAT
                      ____________________________________________________________
consensus             AATACAAAGTAATCAAAATCAAAAGAAATAACACTATATAAACCATTGCCTGGATGAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF041K14-          AGTATAATCATTTGATTCAATTAGATGTTGCAAGAAAAACTATGATTCTATGAAAAAACC
rJMSF012I10-             ATAATCATTTGATTCAATTAGATGTTGCAAGAAAAACTATGATTCTATGAAAAAACC
rJMSF025B02-             ATAATCATTTGATTCAATTAGATGTTGCAAGAAAAACTATGATTCTATGAAAAAACC
rJMSF031G23-                                                   ATGATTCTATGAAAAAACC
rJMFF002G16-                             ATTAGATGTTGCAAGAAAAACTATGATTCTATGAAAAAACC
rJMSF041P17-          AGTATAATCATTTGATTCAATTAGATGTTGCAAGAAAAACTATGATTCTATGAAAAAACC
rJMFF007H08-                                     TTGCAAGAAAAACTATGATTCTATGAAAAAACC
rJMFF031J17-                             ATTAGATGTTGCAAGAAAAACTATGATTCTATGAAAAAACC
                      ____________________________________________________________
consensus             AGTATAATCATTTGATTCAATTAGATGTTGCAAGAAAAACTATGATTCTATGAAAAAACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF041K14-          AACACACATTAGTACATGGTGATTAAGGAATAACCTCTATGGTATTCTTATCTGCCAAAA
rJMSF012I10-          AACACACATTAGTACATGGTGATTAAGGAATAACCTCTATGGTATTCTTATCTGCCAAAA
rJMSF025B02-          AACACACATTAGTACATGGTGATTAAGGAATAACCTCTATGGTATTCTTATCTGCCAAAA
rJMSF031G23-          AACACACATTAGTACATGGTGATTAAGGAATAACCTCTATGGTATTCTTATCTGCCAAAA
rJMFF002G16-          AACACACATTAGTACATGGTGATTAAGGAATAACCTCTATGGTATTCTTATCTGCCAAAA
rJMSF041P17-          AACACACATTAGTACATGGTGATTAAGGAATAACCTCTATGGTATTCTTATCTGCCAAAA
rJMFF007H08-          AACACACATTAGTACATGGTGATTAAGGAATAACCTCTATGGTATTCTTATCTGCCAAAA
rJMSF028H20-                          TGGTGATTAAGGAATAACCTCTATGGTATTCTTATCTGCCAAAA
rJMFF031J17-          AACACACATTAGTACATGGTGATTAAGGAATAACCTCTATGGTATTCTTATCTGCCAAAA
                      ____________________________________________________________
consensus             AACACACATTAGTACATGGTGATTAAGGAATAACCTCTATGGTATTCTTATCTGCCAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF041K14-          TAAGATCCAAGTACTCCGAATATCTCTGCTTACTCCTCTGTTTGCAGGCTGAGCAATGCC
rJMSF012I10-          TAAGATCCAAGTACTCCGAATATCTCTGCTTACTCCTCTGTTTGCAGGCTGAGCAATGCC
rJMSF025B02-          TAAGATCCAAGTACTCCGAATATCTCTGCTTACTCCTCTGTTTGCAGGCTGAGCAATGCC
rJMSF031G23-          TAAGATCCAAGTACTCCGAATATCTCTGCTTACTCCTCTGTTTGCAGGCTGAGCAATGCC
rJMFF002G16-          TAAGATCCAAGTACTCCGAATATCTCTGCTTACTCCTCTGTTTGCAGGCTGAGCAATGCC
rJMSF041P17-          TAAGATCCAAGTACTCCGAATATCTCTGCTTACTCCTCTGTTTGCAGGCTGAGCAATGCC
rJMFF007H08-          TAAGATCCAAGTACTCCGAATATCTCTGCTTACTCCTCTGTTTGCAGGCTGAGCAATGCC
rJMSF028H20-          TAAGATCCAAGTACTCCGAATATCTCTGCTTACTCCTCTGTTTGCAGGCTGAGCAATGCC
rJMFF031J17-          TAAGATCCAAGTACTCCGAATATCTCTGCTTACTCCTCTGTTTGCAGGCTGAGCAATGCC
                      ____________________________________________________________
consensus             TAAGATCCAAGTACTCCGAATATCTCTGCTTACTCCTCTGTTTGCAGGCTGAGCAATGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF041K14-          CACTGGATTGGTCATTGGGAGCAATCTCCTTTATTGAATGCCCATTAGCAACACAGACTC
rJMSF012I10-          CACTGGATTGGTCATTGGGAGCAATCTCCTTTATTGAATGCCCATTAGCAACACAGACTC
rJMSF025B02-          CACTGGATTGGTCATTGGGAGCAATCTCCTTTATTGAATGCCCATTAGCAACACAGACTC
rJMSF031G23-          CACTGGATTGGTCATTGGGAGCAATCTCCTTTATTGAATGCCCATTAGCAACACAGACTC
rJMFF002G16-          CACTGGATTGGTCATTGGGAGCAATCTCCTTTATTGAATGCCCATTAGCAACACAGACTC
rJMSF041P17-          CACTGGATTGGTCATTGGGAGCAATCTCCTTTATTGAATGCCCATTAGCAACACAGACTC
rJMFF007H08-          CACTGGATTGGTCATTGGGAGCAATCTCCTTTATTGAATGCCCATTAGCAACACAGACTC
rJMSF028H20-          CACTGGATTGGTCATTGGGAGCAATCTCCTTTATTGAATGCCCATTAGCAACACAGACTC
rJMFF031J17-          CACTGGATTGGTCATTGGGAGCAATCTCCTTTATTGAATGCCCATTAGCAACACAGACTC
                      ____________________________________________________________
consensus             CACTGGATTGGTCATTGGGAGCAATCTCCTTTATTGAATGCCCATTAGCAACACAGACTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF041K14-          AGAGTACAGAAGAATTGTATGAAAAGATATTTAGCATATCTAGTTTCAACAGATCAATGA
rJMSF012I10-          AGAGTACAGAAGAATTGTATGAAAAGATATTTAGCATATCTAGTTTCAACAGATCAATGA
rJMSF025B02-          AGAGTACAGAAGAATTGTATGAAAAGATATTTAGCATATCTAGTTTCAACAGATCAATGA
rJMSF031G23-          AGAGTACAGAAGAATTGTATGAAAAGATATTTAGCATATCTAGTTTCAACAGATCAATGA
rJMFF002G16-          AGAGTACAGAAGAATTGTATGAAAAGATATTTAGCATATCTAGTTTCAACAGATCAATGA
rJMSF041P17-          AGAGTACAGAAGAATTGTATGAAAAGATATTTAGCATATCTAGTTTCAACAGATCAATGA
rJMFF007H08-          AGAGTACAGAAGAATTGTATGAAAAGATATTTAACATATCTAGTTTCAACAGATCAATGA
rJMSF028H20-          AGAGTACAGAAGAATTGTATGAAAAGATATTTAGCATATCTAGTTTCAACAGATCAATGA
rJMFF031J17-          AGAGTACAGAAGAATTGTATGAAAAGATATTTAGCATATCTAGTTTCAACAGATCAATGA
rJMSF052L02-                                                                  ATGA
                      ____________________________________________________________
consensus             AGAGTACAGAAGAATTGTATGAAAAGATATTTAGCATATCTAGTTTCAACAGATCAATGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF041K14-          ACAGAAAGAGGGCAAAGTGATTATTCAAATTTGTAATCAGCTCCAAATGCACCATATTTA
rJMSF012I10-          ACAGAAAGAGGGCAAAGTGATTATTCAAATTTGTAATCAGCTCCAAATGCACCATATTTA
rJMSF025B02-          ACAGAAAGAGGGCAAAGTGATTATTCAAATTTGTAATCAGCTCCAAATGCACCATATTTA
rJMSF031G23-          ACAGAAAGAGGGCAAAGTGATTATTCAAATTTGTAATCAGCTCCAAATGCACCATATTTA
rJMFF002G16-          ACAGAAAGAGGGCAAAGTGATTATTCAAATTTGTAATCAGCTCCAAATGCACCATATTTA
rJMSF041P17-          ACAGAAAGAGGGCAAAGTGATTATTCAAATTTGTAATCAGCTCCAAATGCACCATATTTA
rJMFF007H08-          ACAGAAAGAGGGCAAAGTGATTATTCAAATTTGTAATCAGCTCCAAATGCACCATATTTA
rJMSF028H20-          ACAGAAAGAGGGCAAAGTGATTATTCAAATTTGTAATCAGCTCCAAATGCACCATATTTA
rJMFF031J17-          ACAGAAAGA-GGCAAAGTGATTATTCAAATTTGTAATCAGCTCCAAATGCACCATATTTA
rJMFF023M02-                                     AATTTGTAATCAGCTCCAAATGCACCATATTTA
rJMSF052L02-          ACAGAAAGAGGGCAAAGTGATTATTCAAATTTGTAATCAGCTCCAAATGCACCATATTTA
                      ____________________________________________________________
consensus             ACAGAAAGAGGGCAAAGTGATTATTCAAATTTGTAATCAGCTCCAAATGCACCATATTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF041K14-          AGAGAAGACTTGAAGATGGTGTGAATTACCAAAGGATGATAGGACAACATTGCCAGAATA
rJMSF012I10-          AGAGAAGACTTGAAGATGGTGTGAATTACCAAAGGATGATAGGACAACATTGCCAGAATA
rJMSF025B02-          AGAGAAGACTTGAAGATGGTGTGAATTACCAAAGGATGATAGGACAACATTGCCAGAATA
rJMSF031G23-          AGAGAAGACTTGAAGATGGTGTGAATTACCAAAGGATGATAGGACAACATTGCCAGAATA
rJMFF002G16-          AGAGAAGACTTGAAGATGGTGTGAATTACCAAAGGATGATAGGACAACATTGCCAGAATA
rJMSF041P17-          AGAGAAGACTTGAAGATGGTGTGAATTACCAAAGGATGATAGGACAACATTGCCAGAATA
rJMFF007H08-          AGAGAAGACTTGAAGATGGTGTGAATTACCAAAGGATGATAGGACAACATTGCCAGAATA
rJMSF028H20-          AGAGAAGACTTGAAGATGGTGTGAATTACCAAAGGATGATAGGACAACATTGCCAGAATA
rJMFF031J17-          AGAGAAGACTTGAAGATGGTGTGAATTACCAAAGGATGATAGGACAACATTGCCAGAATA
rJMFF023M02-          AGAGAAGACTTGAAGATGGTGTGAATTACCAAAGGATGATAGGACAACATTGCCAGAATA
rJMFF005D12-                          TGGTGTGAATTACCAAAGGATGATAGGACAACATTGCCAGAATA
rJMSF052L02-          AGAGAAGACTTGAAGATGGTGTGAATTACCAAAGGATGATAGGACAACATTGCCAGAATA
                      ____________________________________________________________
consensus             AGAGAAGACTTGAAGATGGTGTGAATTACCAAAGGATGATAGGACAACATTGCCAGAATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF041K14-          GCGGCTAGTATGAAAGTGAACTCNAACCTCACCCGCAGCAGGAATATGTTCTCAGC    
rJMSF012I10-          GCGGCTAGTATGAAAGTGAACTCAAACCTCACCCGCAGCAGGAATATGTTCTCAGCAGAT
rJMSF025B02-          GCGGCTAGTATGAAAGTGAACTCAAACCTCACCCGCAGCAGGAATATGTTCTCAGCAGAT
rJMSF031G23-          GCGGCTAGTATGAAAGTGAACTCAAACCTCACCCGCAGCAGGAATATGTTCTCAGCAGAT
rJMFF002G16-          GCGGCTAGTATGAAAGTGAACTCAAACCTCACCCGCAGCAGGAATATGTTCTCAGCAGAT
rJMSF041P17-          GCGGCTAGTATGAAAGTGAACTCAAACCTCACCCGCAGCAGGAATATGTTCTCAGCAGAT
rJMFF007H08-          GCGGCTAGTATGAAAGTGAACTCAAACCTCACCCGCAGCAGGAATATGTTCTCAGCAGAT
rJMSF028H20-          GCGGCTAGTATGAAAGTGAACTCAAACCTCACCCGCAGCAGGAATATGTTCTCAGCAGAT
rJMFF031J17-          GCGGCTAGTATGAAAGTGAACTCAAACCTCACCCGCAGCAGGAATATGTTCTCAGCAGAT
rJMFF023M02-          GCGGCTAGTATGAAAGTGAACTCAAACCTCACCCGCAGCAGGAATATGTTCTCAGCAGAT
rJMFF005D12-          GCGGCTAGTATGAAAGTGAACTCAAACCTCACCCGCAGCAGGAATATGTTCTCAGCAGAT
rJMSF052L02-          GCGGCTAGTATGAAAGTGAACTCAAACCTCACCCGCAGCAGGAATATGTTCTCAGCAGAT
rJMFF006D07-                                                                    AT
                      ____________________________________________________________
consensus             GCGGCTAGTATGAAAGTGAACTCAAACCTCACCCGCAGCAGGAATATGTTCTCAGCAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012I10-          TTCTGATATTATTGTATATTCCAAACTATTATGGGTGCAACAACCAAAATGCTGATACTC
rJMSF025B02-          TTCTGATATTATTGTATATTCCAAACTATTATGGGTGCAACAACCAAAATGCTGATACTC
rJMSF031G23-          TTCTGATATTATTGTATATTCCAAACTATTATGGGTGCAACAACCAAAATGCTGATACTC
rJMFF002G16-          TTCTGATATTATTGTATATTCCAAACTATTATGGGTGCAACAACCAAAATGCTGATACTC
rJMSF041P17-          TTCTGATATTATTGTATATTCCAAACTATTATGGGTGCAACAACCAAAATGCTGATACTC
rJMFF007H08-          TTCTGATATTATTGTATATTCCAAACTATTATGGGTGCAACAACCAAAATGCTGATACCC
rJMSF028H20-          TTCTGATATTATTGTATATTCCAAACTATTATGGGTGCAACAACCAAAATGCTGATACTC
rJMFF031J17-          TTCTGATATTATTGTATATTCCAAACTATTATGGGTGCAACAACCAAAATGCTGATACTC
rJMFF023M02-          TTCTGATATTATTGTATATTCCAAACTATTATGGGTGCAACAACCAAAATGCTGATACTC
rJMFF005D12-          TTCTGATATTATTGTATATTCCAAACTATTATGGGTGCAACAACCAAAATGCTGATACTC
rJMSF052L02-          TTCTGATATTATTGTATATTCCAAACTATTATGGGTGCAACAACCAAAATGCTGATACTC
rJMFF006D07-          TTCTGATATTATTGTATATTCCAAACTATTATGGGTGCAACAACCAAAATGCTGATACTC
                      ____________________________________________________________
consensus             TTCTGATATTATTGTATATTCCAAACTATTATGGGTGCAACAACCAAAATGCTGATACTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012I10-          CTTGGGCATAAGTTGATAAGCTTGGGCAAAAGTTGATAAATGAGTAGAAGAAGATATCAC
rJMSF025B02-          CTTGGGCATAAGTTGATAAGCTTGGGCAAAAGTCGATAAATGAGTAGAAGAAGATATCAC
rJMSF031G23-          CTTGGGCATAAGTTGATAAGCTTGGGCAAAAGTTGATAAATGAGTAGAAGAAGATATCAC
rJMFF002G16-          CTTGGGCATAAGTTGATAAGCTTGGGCAAAAGTTGATAAATGAGTAGAAGAAGATATCAC
rJMSF041P17-          CTTGGGCATAAGTTGATAAGCTTGGGCAAAAGTTGATAAATGAGTAGAAGAAGATATCAC
rJMFF007H08-          CTTGGGCATAAGTTGATAAGCTTGGGCAAAAGTTGATAAATGAGTAGAAGAAGATATCAC
rJMSF028H20-          CTTGGGCATAAGTTGATAAGCTTGGGCAAAAGTTGATAACTGAGTAGAAGAAGATATCAC
rJMFF031J17-          CTTGGGCATAAGTTGATAAGCTTGGGCAAAAGTTGATAAATGAGTAGAAGAAGATATCAC
rJMFF023M02-          CTTGGGCATAAGTTGATAAGCTTGGGCAAAAGTTGATAAATGAGTAGAAGAAGATATCAC
rJMFF005D12-          CTTGGGCATAAGTTGATAAGCTTGGGCAAAAGTTGATAAATGAGTAGAAGAAGATATCAC
rJMSF052L02-          CTTGGGCATAAGTTGATAAGCTTGGGCAAAAGTTGATAAATGAGTAGAAGAAGATATCAC
rJMFF006D07-          CTTGGGCATAAGTTGATAAGCTTGGGCAAAAGTTGATAAATGAGTAGAAGAAGATATCAC
                      ____________________________________________________________
consensus             CTTGGGCATAAGTTGATAAGCTTGGGCAAAAGTTGATAAATGAGTAGAAGAAGATATCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012I10-          CTCAATCAAAACTTGCAAAAGATATCATCCAACAAAAGCAGGTCAACATTCATCCACCGT
rJMSF025B02-          CTCAATCAAAACTTGCAAAAGATATCATCCAACAAAAGCAGGTCAACATTCATCCACCGT
rJMSF031G23-          CTCAATCAAAACTTGCAAAAGATATCATCCAACAAAAGCAGGTCAACATT          
rJMFF002G16-          CTCAATCAAAACTTGCAAAAGATATCATCCAACAAAAGCAGGTCAACATTCATCCACCGT
rJMSF041P17-          CTCAATCAAAACTTGCAAAAGATATCATCCAACAAAAGCAGGTCAACATTCATCCACCGT
rJMFF007H08-          CTCAATCAAAACTTGCAAAAGATATCATCCAACAAAAGCAGGTCAACATTCATCCACCGT
rJMSF028H20-          CTCAATCAAAACTTGCAAAAGATATCATCCAACAAAAGCAGGTCAACATTCATCCACCGT
rJMFF031J17-          CTCAATCAAAACTTGCAAAAGATATCATCCAACAAAAGCAGGTCAACATTCATCCACCGT
rJMFF023M02-          CTCAATCAAAACTTGCAAAAGATATCATCCAACAAAAGCAGGTCAACATTCATCCACCGT
rJMFF005D12-          CTCAATCAAAACTTGCAAAAGATATCATCCAACAAAAGCAGGTCAACATTCATCCACCGT
rJMSF052L02-          CTCAATCAAAACTTGCAAAAGATATCATCCAACAAAAGCAGGTCAACATTCATCCACCGT
rJMFF006D07-          CTCAATCAAAACTTGCAAAAGATATCATCCAACAAAAGCAGGTCAACATTCATCCACCGT
                      ____________________________________________________________
consensus             CTCAATCAAAACTTGCAAAAGATATCATCCAACAAAAGCAGGTCAACATTCATCCACCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012I10-          AGCAGCTCATAAATAAGAGAGGCTTTGTACCTATTTAACCTGGACGAAAAGACTCC-GGT
rJMSF025B02-          AGCAGCTCATAAATAAGAGAGGCTTTGTACCTATTTAACCTGGACGAAAAGACTCC-GGT
rJMFF002G16-          AGCAGCTCATAAATAAGAGAGGCTTTGTACCTATTTAACCTGGACGAAAAGACTCC-GGT
rJMSF041P17-          AGCAGCTCATAAATAAGAGAGGCTTTGTACCTATTTAACCTGGACGAAAAGACTCCGGGN
rJMFF007H08-          AGCAGCTCATAAATAAGAGAGGCTTTGTACCTATTTAACCTGGACGAAAAGACTCC-GGT
rJMSF028H20-          AGCAGCTCATAAATAAGAGAGGCTTTGTACCTATTTAACCTGGACGAAAAGACTCC-GGT
rJMFF031J17-          AGCAGCTCATAAATAAGAGAGGCTTTGTACCTATTTAACCTGGACGAAAAGACTCC-GGT
rJMFF023M02-          AGCAGCTCATAAATAAGAGAGGCTTTGTACCTATTTAACCTGGACGAAAAGACTCC-GGT
rJMFF005D12-          AGCAGCTCATAAATAAGAGAGGCTTTGTACCTATTTAACCTGGACGAAAAGACTCC-GGT
rJMSF052L02-          AGCAGCTCATAAATAAGAGAGGCTTTGTACCTATTTAACCTGGACGAAAAGACTCC-GGT
rJMFF006D07-          AGCAGCTCATAAATAAGAGAGGCTTTGTACCTATTTAACCTGGACGAAAAGACTCC-GGT
                      ____________________________________________________________
consensus             AGCAGCTCATAAATAAGAGAGGCTTTGTACCTATTTAACCTGGACGAAAAGACTCC-GGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012I10-          CTTGCTTTTCGTCAGC                                            
rJMSF025B02-          CTTGCTTTTCGTCAGCTTTTAGTTATACACCTCTGGAA                      
rJMFF002G16-          CTTGCTTTTCGTCAGCTTTTAGTTATACACCTCTGGAAATGGATT               
rJMSF041P17-          CTTGCTTTTCGTCAGCTTTTAGTTATACACCTCTGGAAATGGATTGCCTCCTCCAATATC
rJMFF007H08-          CTTGCTTTTCGTCAGCTTTTAGTTATACACCTCTGGAAATGGATTGCCTCCTCCAATATC
rJMSF028H20-          CTTGCTTTTCGTCAGCTTTTAGTTATACACCTCTGGAAATGGATTGCCTCCTCCAATATC
rJMFF031J17-          CTTGCTTTTCGTCAGCTTTTAGTTATACACCTCTGGAAATGGATTGCCTCCTCCAATATC
rJMFF023M02-          CTTGCTTTTCGTCAGCTTTTAGTTATACACCTCTGGAAATGGATTGCCTCCTCCAATATC
rJMFF005D12-          CTTGCTTTTCGTCAGCTTTTAGTTATACACCTCTGGAAATGGATTGCCTCCTCCAATATC
rJMSF052L02-          CTTGCTTTTCGTCAGCTTTTAGTTATACACCTCTGGAAATGGATTGCCTCCTCCAATATC
rJMFF006D07-          CTTGCTTTTCGTCAGCTTTTAGTTATACACCTCTGGAAATGGATTGCCTCCTCCAATATC
                      ____________________________________________________________
consensus             CTTGCTTTTCGTCAGCTTTTAGTTATACACCTCTGGAAATGGATTGCCTCCTCCAATATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF041P17-          TTCCCC                                                      
rJMFF007H08-          TTCCCCTTCCTCTT                                              
rJMSF028H20-          TTCCCCTTCCTCTT                                              
rJMFF031J17-          TTCCCCTTCCTCTTCAACCCGA                                      
rJMFF023M02-          TTCCCCTTCCTCTTCAACCCGAGAATACGCTCCTATGTCATTATGCAGGCGAATGCAATT
rJMFF005D12-          TTCCCCTTCCTCTTCAACCCGAGAATACGCTCCTATGTCATTATGCAGGCGAATGCAATT
rJMSF052L02-          TTCCCCTTCCTCTTCAACCCGAGAATACGCTCCTATGTCATTATGCAGGCGAATGCAATT
rJMFF006D07-          TTCCCCTTCCTCTTCAACCCGAGAATACGCTCCTATGTCATTATGCAGGCGAATGCAATT
                      ____________________________________________________________
consensus             TTCCCCTTCCTCTTCAACCCGAGAATACGCTCCTATGTCATTATGCAGGCGAATGCAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF023M02-          TATCCGTGCACAAAAAAAAACTACTCTACTCCCATAACATCCATCAACAGTCAACATCTG
rJMFF005D12-          TATCCGTGCACAAAAAAAAACTACTCTACTCCCATAACATCCATCAACAGTCAACATCTG
rJMSF052L02-          TATCCGTGCACAAAAAAAAACTACTCTACTCCCATAACATCCATCAACAGTCAACATCTG
rJMFF006D07-          TATCCGTGCACAAAAAAAAACTACTCTACTCCCATAACATCCATCAACAGTCAACATCTG
                      ____________________________________________________________
consensus             TATCCGTGCACAAAAAAAAACTACTCTACTCCCATAACATCCATCAACAGTCAACATCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF023M02-          TTGGATGGAATGGTCTTGTTCCAAACCTCTTGAATTAAAGTGCAGCTTGCCAATTGCAGA
rJMFF005D12-          TTGGATGGAATGGTCTTGTTCCAAACCTCTTGAATTAAAGTGCAGCTTGCCAATTGCAGA
rJMSF052L02-          TTGGATGGAATGGTCTTGTTCCAAACCTCTTGAATTAAAGTGCAGCTTGCCAATTGCAGA
rJMFF006D07-          TTGGATGGAATGGTCTTGTTCCAAACCTCTTGAATTAAAGTGCAGCTTGCCAATTGCAGA
                      ____________________________________________________________
consensus             TTGGATGGAATGGTCTTGTTCCAAACCTCTTGAATTAAAGTGCAGCTTGCCAATTGCAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF023M02-          CTCATCCATCCTCATTGTTCAACATAGCACAATGTATCATACAATTGCAAATTCGGAAAA
rJMFF005D12-          CTCATCCATCCTCATTGTTCAACATAGCACAATGTATCATACAATTGCAAATTCGGAAAA
rJMSF052L02-          CTCATCCATCCTCATTGTTCAACATAGCACAATGTATCATACAATTGCAAATTCGGAAAA
rJMFF006D07-          CTCATCCATCCTCATTGTTCAACATAGCACAATGTATCATACAATTGCAAATTCGGAAAA
                      ____________________________________________________________
consensus             CTCATCCATCCTCATTGTTCAACATAGCACAATGTATCATACAATTGCAAATTCGGAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF023M02-          CATCAAATACAACAAGAATTATTAAAAAGTCTACA                         
rJMFF005D12-          CATCAAATACAACAAGAATTATTAAAAAGTCTACA                         
rJMSF052L02-          CATCAAATACAACAAGAATTATTAAAAAGTCTACAGATTTACAAAGATATTCATCAACTT
rJMFF006D07-          CATCAAATACAACAAGAATTATTAAAAAGTCTACAGATTTACAAAGATATTCATCAACTT
rJMFF005L23-                              ATTAAAAAGTCTACAGATTTACAAAGATATTCATCAACTT
                      ____________________________________________________________
consensus             CATCAAATACAACAAGAATTATTAAAAAGTCTACAGATTTACAAAGATATTCATCAACTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052L02-          CCTCATCCACTGCTTTACAACCAGTGTACAAAGTTCCAAAAGTTTATAAAAGAGAAGGAA
rJMFF006D07-          CCTCATCCACTGCTTTACAACCAGTGTACAAAGTTCCAAAAGTTTATAAAAGAGAAGGAA
rJMFF005L23-          CCTCATCCACTGCTTTACAACCAGTGTACAAAGTTCCAAAAGTTTATAAAAGAGAAGGAA
                      ____________________________________________________________
consensus             CCTCATCCACTGCTTTACAACCAGTGTACAAAGTTCCAAAAGTTTATAAAAGAGAAGGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052L02-          CTAAAAATAAACTTGTGTAAGG                                      
rJMFF006D07-          CTAAAAATAAACTTGTGTAAGGNGGTAAACCAACAAAGGTAGATATGAAATATGCNATGT
rJMFF005L23-          CTAAAAATAAACTTGTGTAAGGTGGTAAACCAACAAAGGTAGATATGAAATATGCAATGT
                      ____________________________________________________________
consensus             CTAAAAATAAACTTGTGTAAGGTGGTAAACCAACAAAGGTAGATATGAAATATGCAATGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF006D07-          GTCATGAAAAGCA                                               
rJMFF005L23-          GTCATGAAAAGCAATATGAATAGTAACAAAAGATGTTTGAACCATATACTTCCATGGTAA
JMSF041P17+                                                                   GTAA
                      ____________________________________________________________
consensus             GTCATGAAAAGCAATATGAATAGTAACAAAAGATGTTTGAACCATATACTTCCATGGTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF005L23-          GGAGAGAAATGAGTAAGGTGGGAGAAGAAAATGAGTAAGGTCATTTGCCAACAACTCTTT
JMSF041P17+           GGAGAGAAATGAGTAAGGTGGGAGAAGAAAATGAGTAAGGTCATTTGCCAACAACTCTTT
                      ____________________________________________________________
consensus             GGAGAGAAATGAGTAAGGTGGGAGAAGAAAATGAGTAAGGTCATTTGCCAACAACTCTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF005L23-          GGTTTGCCTCAATTTCTCATCCTATAAAGGTATGATTGGTGATTGATAAAATTTACCATC
JMSF041P17+           GGTTTGCCTCAATTTCTCATCCTATAAAGGTATGATTGGTGATTGATAAAATTTACCATC
                      ____________________________________________________________
consensus             GGTTTGCCTCAATTTCTCATCCTATAAAGGTATGATTGGTGATTGATAAAATTTACCATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF005L23-          TTGAATAGCAAAATTGCCTGTGGATGTTCATTTAGATAATCTAAAAATCTGTGACTGCCA
JMSF041P17+           TTGAATAGCAAAATTGCCTGTGGATGTTCATTTAGATAATCTAAAAATCTGTGACTGCCA
                      ____________________________________________________________
consensus             TTGAATAGCAAAATTGCCTGTGGATGTTCATTTAGATAATCTAAAAATCTGTGACTGCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF005L23-          TAACCCAAATATTGATGCTGGGAGTACATTCAACTAGTTAGTTTAATGTCATTACAGGTT
JMSF041P17+           TAACCCAAATATTGATGCTGGGAGTACATTCAACTAGTTAGTTTAATGTCATTACAGGTT
                      ____________________________________________________________
consensus             TAACCCAAATATTGATGCTGGGAGTACATTCAACTAGTTAGTTTAATGTCATTACAGGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF005L23-          AAAGCATCCACTTGTTCCATGTTTGACAAATATTATGAACAATTGATAGTACAGAACTTT
JMSF041P17+           AAAGCATCCACTTGTTCCATGTTTGACAAATATTATGAACAATTGATAGTACAGAACTTT
rJMSF050A09-                                                  AATTGATAGTACAGAACTTT
rJMSF050B09-                                                  AATTGATAGTACAGAACTTT
                      ____________________________________________________________
consensus             AAAGCATCCACTTGTTCCATGTTTGACAAATATTATGAACAATTGATAGTACAGAACTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF005L23-          TAACTTCTTTCTATTACACACCCAAAATTCAAAAACATAATTATAATCAATAGTCATAAA
JMSF041P17+           TAACTTCTTTCTATTACACACCCAAAATTCAAAAACATAATTATAATCAATAGTCATAAA
rJMSF050A09-          TAACTTCTTTCTATTACACACCCAAAATTCAAAAACATAATTATAATCAATAGTCATAAA
rJMSF050B09-          TAACTTCTTTCTATTACACACCCAAAATTCAAAAACATAATTATAATCAATAGTCATAAA
                      ____________________________________________________________
consensus             TAACTTCTTTCTATTACACACCCAAAATTCAAAAACATAATTATAATCAATAGTCATAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF005L23-          TTTTACCATAAAAAGATATTGAAACTCAATTGTAGAAATATAAATGATATATGAAAATTT
JMSF041P17+           TTTTACCATAAAAAGATATTGAAACTCAATTGTAGAAATATAAATGATATATGAAAATTT
rJMSF050A09-          TTTTACCATAAAAAGATATTGAAACTCAATTGTAGAAATATAAATGATATATGAAAATTT
rJMSF050B09-          TTTTACCATAAAAAGATATTGAAACTCAATTGTAGAAATATAAATGATATATGAAAATTT
                      ____________________________________________________________
consensus             TTTTACCATAAAAAGATATTGAAACTCAATTGTAGAAATATAAATGATATATGAAAATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF005L23-          TGAAACTCCTTTTCAATTTTATCTTTTCAATCTCATATAAAAGAGGTTATTAGTTTCAAA
JMSF041P17+           TGAAACTCCTTTTCAATTTTATCTTTTCAATCTCATATAAAAGAGGTTATTAGTTTCAAA
rJMSF050A09-          TGAAACTCCTTTTCAATTTTATCTTTTCAATCTCATATAAAAGAGGTTATTAGTTTCAAA
rJMSF050B09-          TGAAACTCCTTTTCAATTTTATCTTTTCAATCTCATATAAAAGAGGTTATTAGTTTCAAA
                      ____________________________________________________________
consensus             TGAAACTCCTTTTCAATTTTATCTTTTCAATCTCATATAAAAGAGGTTATTAGTTTCAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF005L23-          TTTTAATCATTTTTTTTTAACCATTTGAATTTGGTATTTTTGCCAC              
JMSF041P17+           TTTTAATCATTTTTTTTTAACCATTTGAATTTGGTATTTTTGCCACAAACCAGATTCTGA
rJMSF050A09-          TTTTAATCATTTTTTTTTAACCATTTGAATTTGGTATTTTTGCCACAAACCAGATTCTGA
rJMSF050B09-          TTTTAATCATTTTTTTTTAACCATTTGAATTTGGTATTTTTGCCACAAACCAGATTCTGA
JMSF041K14+                                                           ACCAGATTCTGA
                      ____________________________________________________________
consensus             TTTTAATCATTTTTTTTTAACCATTTGAATTTGGTATTTTTGCCACAAACCAGATTCTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF041P17+           CATGTTTTGCTTCCTAAACTAAGGTAACCAAGTGAAATTAAATCTGAAATGTAAATTAAT
rJMSF050A09-          CATGTTTTGCTTCCTAAACTAAGGTAACCAAGTGAAATTAAATCTGAAATGTAAATTAAT
rJMSF050B09-          CATGTTTTGCTTCCTAAACTAAGGTAACCAAGTGAAATTAAATCTGAAATGTAAATTAAT
JMSF041K14+           CATGTTTTGCTTCCTAAANTAAGGTAACCAAGTGAAATTAAATCTGAAATGTAAATTAAT
                      ____________________________________________________________
consensus             CATGTTTTGCTTCCTAAACTAAGGTAACCAAGTGAAATTAAATCTGAAATGTAAATTAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF041P17+           TGCATGATTTATACCTTTCATGGTTGGTTAGCAAGATGATGTTGATCCATAAGCTTCCAT
rJMSF050A09-          TGCATGATTTATACCTTTCATGGTTGGTTAGCAAGATGATGTTGATCCATAAGCTTCCAT
rJMSF050B09-          TGCATGATTTATACCTTTCATGGTTGGTTAGCAAGATGATGTTGATCCATAAGCTTCCAT
JMSF028H20+                                            AGATGATGTTGATCCATAAGCTTCCAT
JMSF050B09+                                       TAGCAAGATGATGTTGATCCATAAGCTTCCAT
JMSF041K14+           TGCATGATTTATACCTTTCATGGTTGGTTAGCAAGATGATGTTGATCCATAAGCTTCCAT
JMSF025B02+                                       TAGCAAGATGATGTTGATCCATAAGCTTCCAT
                      ____________________________________________________________
consensus             TGCATGATTTATACCTTTCATGGTTGGTTAGCAAGATGATGTTGATCCATAAGCTTCCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF041P17+           CGTGTTGGGATTGTTGGTAGTGTGAGTACGTTGGATGTTGAGGACCAAAAGAATAGCAAA
rJMSF050A09-          CGTGTTGGGATTGTTGGTAGTGTGAGTACGTTGGATGTTGAGGACCAAAAGAATAGCAAA
rJMSF050B09-          CGTGTTGGGATTGTTGGTAGTGTGAGTACGTTGGATGTTGAGGACCAAAAGAATAGCAAA
JMSF028H20+           CGTGTTGGGATTGTTGGTAGTGTGAGTACGTTGGATGTTGAGGACCAAAAGAATAGCAAA
JMSF050A09+                        TTGGTAGTGTGAGTACGTTGGATGTTGAGGNCCAAAAGAATAGCAAA
JMFS139E06+                       GTTGGTAGTGTGAGTACGTTGGATGTTGAGGACCAAAAGAATAGCAAA
JMFF045O16+                          GGTAGTGTGAGTACGTGNGATGTTGAGGACCAAAAGAATAGCAAA
JMSF050B09+           CGTGTTGGGATTGTTGGTAGTGTGAGTACGTTGGATGTTGAGGACCAAAAGAATAGCAAA
JMSF041K14+           CGTGTTGGGATTGTTGGTAGTGTGAGTACGTTGGATGTTGAGGACCAAAAGAATAGCAAA
JMSF025B02+           CGTGTTGGGATTGTTGGTAGTGTGAGTACGTTGGATGTTGAGGACCAAAAGAATAGCAAA
JMSF052L02+                                                    GGACCAAAAGAATAGCAAA
JMFS048G10+                                                         AAAAGAATAGCAAA
JMFF046I13+                                                 TGAGGACCAAAAGAATAGCAAA
JMSF031G23+                    ATTGTTGGTAGTGTGAGTACGTTGGATGTTGAGGACCAAAAGAATAGCAAA
                      ____________________________________________________________
consensus             CGTGTTGGGATTGTTGGTAGTGTGAGTACGTTGGATGTTGAGGACCAAAAGAATAGCAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF041P17+           GCAAGTAAACACAGGGCACACCACCAAAGGGAGAGATC                      
rJMSF050A09-          GCAAGTAAACACAGGGCACACCACCAAAGGGAGAGATCCCGGGCTAAAATATCCCGTGCG
rJMSF050B09-          GCAAGTAAACACAGGGCACACCACCAAAGGGAGAGATCCCGGGCTAAAATATCCCGTGCG
JMSF028H20+           GCAAGTAAACACAGGGCACACCACCAAAGGGAGAGATCCCGGGCTAAAATATCCCGTGCG
JMSF050A09+           GCAAGTAAACACAGGGCACACCACCAAAGGGAGAGATCCCGGGCTAAAATATCCCGTGCG
JMFS139E06+           GCAAGTAAACACAGGGCACACCACCAAAGGGAGAGATCCCGGGCTAAAATATCCCGTGCG
JMFF045O16+           GCAAGTAAACACAGGGCACACCACCAAAGGGAGAGATCCCGGGCTAAAATATCCCGTGCG
JMSF050B09+           GCAAGTAAACACAGGGCACACCACCAAAGGGAGAGATCCCGGGCTAAAATATCCCGTGCG
JMSF041K14+           GCAAGTAAACACAGGGCACACCACCAAAGGGAGAGATCCCGGGCTAAAATATCCCGTGCG
JMSF025B02+           GCAAGTAAACACAGGGCACACCACCAAAGGGAGAGATCCCGGGCTAAAATATCCCGTGCG
JMSF052L02+           GCAAGTAAACACAGGGCACACCACCAAAGGGAGAGATCCCGGGCTAAAATATCCCGTGCG
JMFS048G10+           GCAAGTAAACACAGGGCACACCACCAAAGGGAGAGATCCCGGGCTAAAATATCCCGTGCG
JMFF046I13+           GCAAGTAAACACAGGGCACACCACCAAAGGGAGAGATCCCGGGCTAAAATATCCCGTGCG
JMSF031G23+           GCAAGTAAACACAGGGCACACCACCAAAGGGAGAGATCCCGGGCTAAAATATCCCGTGCG
                      ____________________________________________________________
consensus             GCAAGTAAACACAGGGCACACCACCAAAGGGAGAGATCCCGGGCTAAAATATCCCGTGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050A09-          ATCTCTCCCTCAAAACCAAAAAAGTTCTTATTTTTATTAAATTTGGGACCTGCCATGCAA
rJMSF050B09-          ATCTCTCCCTCAAAACCAAAAAAGTTCTTATTTTTATTAAATTTGGGACCTGCCATGCAA
JMSF028H20+           ATCTCTCCCTCAAAACCAAAAAGGTTCTTATTTTTATTAAATTTGGGACCTGCCATGCAA
JMSF050A09+           ATCTCTCCCTCAAAACCAAAAAAGTTCTTATTTTTATTAAATTTGGGACCTGCCATGCAA
JMFS139E06+           ATCTCTCCCTCAAAACCAAAAAAGTTCTTATTTTTATTAAATTTGGGACCTGCCATGCAA
JMFF045O16+           ATCTCTCCCTCAAAACCAAAAAAGTTCTTATTTTTATTAAATTTGGGACCTGCCATGCAA
JMSF050B09+           ATCTCTCCCTCAAAACCAAAAAAGTTCTTATTTTTATTAAATTTGGGACCTGCCATGCAA
JMSF041K14+           ATCTCTCCCTCAAAACCAAAAAAGTTCTTATTTTTATTAAATTTGGGACCTGCCATGCAA
JMSF025B02+           ATCTCTCCCTCAAAACCAAAAAAGTTCTTATTTTTATTAAATTTGGGACCTGCCATGCAA
JMSF052L02+           ATCTCTCCCTCAAAACCAAAAAAGTTCTTATTTTTATTAAATTTGGGACCTGCCATGCAA
JMFS048G10+           ATCTCTCCCTCAAAACCAAAAAAGTTCTTATTTTTATTAAATTTGGGACCTGCCATGCAA
JMSF012I10+                       AAACCAAAAAAGTTCTTATTTTTATTAAATTTGGGACCTGCCATGCAA
JMFF006D07+                            AAAAAAGTTCTTATTTTTATTAAATTTGGGACCTGCCATGCAA
JMFF031J17+                                AAGTTCTTATTTTTATTAAATTTGGGACCTGCCATGCAA
JMFF023M02+                                     CTTATTTTTATTAAATTTGGGACCTGCCATGCAA
JMFF005L23+                                      TTATTTTTATTAAATTTGGGACCTGCCATGCAA
JMFF007H08+                             AAAAAGTTCTTATTTTTATTAAATTTGGGACCTGCCATGCAA
JMFF046I13+           ATCTCTCCCTCAAAACCAAAAAAGTTCTTATTTTTATTAAATTTGGGACCTGCCATGCAA
JMSF031G23+           ATCTCTCCCTCAAAACCAAAAAAGTTCTTATTTTTATTAAATTTGGGACCTGCCATGCAA
                      ____________________________________________________________
consensus             ATCTCTCCCTCAAAACCAAAAAAGTTCTTATTTTTATTAAATTTGGGACCTGCCATGCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050A09-          GCGCACCTGACATGGCAAAGGTCTGGGATGACAAAAAGATCAATTGGAACTCAGCCCCCT
rJMSF050B09-          GCGCACCTGACATGGCAAAGGTCTGGGATGACAAAAAGATCAATTGGAACTCAGCCCCCT
JMSF028H20+           GCGCACCTGACATGGCAAAGGTCTGGGATGACAAAAAGATCAATTGGAACTCAGCCCCCT
JMSF050A09+           GCGCACCTGACATGGCAAAGGTCTGGGATGACAAAAAGATCAATTGGAACTCAGCCCCCT
JMFS139E06+           GCGCACCTGACATGGCAAAGGTCTGGGATGACAAAAAGATCAATTGGAACTCAGCCCCCT
JMFF045O16+           GCGCACCTGACATGGCAAAGGTCTGGGATGACAAAAAGATCAATTGGAACTCAGCCCCCT
JMSF050B09+           GCGCACCTGACATGGCAAAGGTCTGGGATGACAAAAAGATCAATTGGAACTCAGCCCCCT
JMSF041K14+           GCGCACCTGACATGGCAAAGGTCTGGGATGACAAAAAGATCAATTGGAACTCAGCCCCCT
JMSF025B02+           GCGCACCTGACATGGCAAAGGTCTGGGATGACAAAAAGATCAATTGGAACTCAGCCCCCT
JMSF052L02+           GCGCACCTGACATGGCAAAGGTCTGGGATGACAAAAAGATCAATTGGAACTCAGCCCCCT
JMFS048G10+           GCGCACCTGACATGGCAAAGGTCTGGGATGACAAAAAGATCAATTGGAACTCAGCCCCCT
JMSF012I10+           GCGCACCTGACATGGCAAAGGTCTGGGATGACAAAAAGATCAATTGGAACTCAGCCCCCT
JMFF006D07+           GCGCACCTGACATGGCAAAGGTCTGGGATGACAAAAAGATCAATTGGAACTCAGCCCCCT
JMFF031J17+           GCGCACCTGACATGGCAAAGGTCTGGGATGACAAAAAGATCAATTGGAACTCAGCCCCCT
JMFF023M02+           GCGCACCTGACATGGCAAAGGTCTGGGATGACAAAAAGATCAATTGGAACTCAGCCCCCT
JMFF005L23+           GCGCACCTGACATGGCAAAGGTCTGGGATGACAAAAAAATCAATTGGAACTCAGCCCCCT
JMFF007H08+           GCGCACCTGACATGGCAAAGGTCTGGGATGACAAAAAGATCAATTGGAACTCAGCCCCCT
JMFF005D12+                                     GATGACAAAAAGATCAATTGGAACTCAGCCCCCT
JMFF046I13+           GCGCACCTGACATGGCAAAGGTCTGGGATGACAAAAAGATCAATTGGAACTCAGCCCCCT
JMSF031G23+           GCGCACCTGACATGGCAAAGGTCTGGGATGACAAAAAGATCAATTGGAACTCAGCCCCCT
                      ____________________________________________________________
consensus             GCGCACCTGACATGGCAAAGGTCTGGGATGACAAAAAGATCAATTGGAACTCAGCCCCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050A09-          GAAACTAGGCCTCCTCTGCCCCAATTTCTCCTTTTACATCACAAATTTCAATCCTGCACT
rJMSF050B09-          GAAACTAGGCCTCCTCTGCCCCAATTTCTCCTTTTACATCACAAATTTCAATCCTGCACT
JMSF028H20+           GAAACTAGGCCTCCTCTGCCCCAATTTCTCCTTTTACATCACAAATTTCAATCCTGCACT
JMSF050A09+           GAAACTAGGCCTCCTCTGCCCCAATTTCTCCTTTTACATCACAAATTTCAATCCTGCACT
JMFS139E06+           GAAACTAGGCCTCCTCTGCCCCAATTTCTCCTTTTACATCACAAATTTCAATCCTGCACT
JMFF045O16+           GAAACTAGGCCTCCTCTGCCCCAATTTCTCCTTTTACATCACAAATTTCAATCCTGCACT
JMSF050B09+           GAAACTAGGCCTCCTCTGCCCCAATTTCTCCTTTTACATCACAAATTTCAATCCTGCACT
JMSF041K14+           GAAACTAGGCCTCCTCTGCCCCAATTTCTCCTTTTACATCACAAATTTCAATCCTGCACT
JMSF025B02+           GAAACTAGGCCTCCTCTGCCCCAATTTCTCCTTTTACATCACAAATTTCAATCCTGCACT
JMSF052L02+           GAAACTAGGCCTCCTCTGCCCCAATTTCTCCTTTTACATCACAAATTTCAATCCTGCACT
JMFS048G10+           GAAACTAGGCCTCCTCTGCCCCAATTTCTCCTTTTACATCACAAATTTCAATCCTGCACT
JMSF012I10+           GAAACTAGGCCTCCTCTGCCCCAATTTCTCCTTTTACATCACAAATTTCAATCCTGCACT
JMFF006D07+           GAAACTAGGCCTCCTCTGCCCCAATTTCTCCTTTTACATCACAAATTTCAATCCTGCACT
JMFF031J17+           GAAACTAGGCCTCCTCTGCCCCAATTTCTCCTTTTACATCACAAATTTCAATCCTGCACT
JMFF023M02+           GAAACTAGGCCTCCTCTGCCCCAATTTCTCCTTTTACATCACAAATTTCAATCCTGCACT
JMFF005L23+           GAAACTAGGCCTCCTCTGCCCCAATTTCTCCTTTTACATCACAAATTTCAATCCTGCACT
JMFF007H08+           GAAACTAGGCCTCCTCTGCCCCAATTTCTCCTTTTACATCACAAATTTCAATCCTGCACT
JMFF005D12+           GAAACTAGGCCTCCTCTGCCCCAATTTCTCCTTTTACATCACAAATTTCAATCCTGCACT
JMFF002G16+                   GCCTCCTCTGCCCCAATTTCTCCTTTTACATCACAAATTTCAATCCTGCACT
JMFF046I13+           GAAACTAGGCCTCCTCTGCCCCAATTTCTCCTTTTACATCACAAATTTCAATCCTGCACT
JMSF031G23+           GAAACTAGGCCTCCTCTGCCCCAATTTCTCCTTTTACATCACAAATTTCAATCCTGCACT
                      ____________________________________________________________
consensus             GAAACTAGGCCTCCTCTGCCCCAATTTCTCCTTTTACATCACAAATTTCAATCCTGCACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050A09-          GCTCCATTTACAACATAGTTCATGANTCAATATAATCGATCGGCAAACATCCAGCTTATC
rJMSF050B09-          GCTCCATTTACAACATAGTTCATGAATCAATATAATCGATCGGCAAACATCCAGCTTATC
JMSF028H20+           GCTCCATTTACAACATAGTTCATGAATCAATATAATCGATCGGCAAACATCCAGCTTATC
JMSF050A09+           GCTCCATTTACAACATAGTTCATGAATCAATATAATCGATCGGCAAACATCCAGCTTATC
JMFS139E06+           GCTCCATTTACAACATAGTTCATGAATCAATATAATCGATCGGCAAACATCCAGCTTATC
JMFF045O16+           GCTCCATTTACAACATAGTTCATGAATCAATATAATCGATCGGCAAACATCCAGCTTATC
JMSF050B09+           GCTCCATTTACAACATAGTTCATGAATCAATATAATCGATCGGCAAACATCCAGCTTATC
JMSF041K14+           GCTCCATTTACAACATAGTTCATGAATCAATATAATCGATCGGCAAACATCCAGCTTATC
JMSF025B02+           GCTCCATTTACAACATAGTTCATGAATCAATATAATCGATCGGCAAACATCCAGCTTATC
JMSF052L02+           GCTCCATTTACAACATAGTTCATGAATCAATATAATCGATCGGCAAACATCCAGCTTATC
JMFS048G10+           GCTCCATTTACAACATAGTTCATGAATCAATATAATCGATCGGCAAACATCCAGCTTATC
JMSF012I10+           GCTCCATTTACAACATAGTTCATGAATCAATATAATCGATCGGCAAACATCCAGCTTATC
JMFF006D07+           GCTCCATTTACAACATAGTTCATGAATCAATATAATCGATCGGCAAACATCCAGCTTATC
JMFF031J17+           GCTCCATTTACAACATAGTTCATGAATCAATATAATCGATCGGCAAACATCCAGCTTATC
JMFF023M02+           GCTCCATTTACAACATAGTTCATGAATCAATATAATCGATCGGCAAACATCCAGCTTATC
JMFF005L23+           GCTCCATTTACAACATAGTTCATGAATCAATATAATCGATCGGCAAACATCCAGCTTATC
JMFF007H08+           GCTCCATTTACAACATAGTTCATGAATCAATATAATCGATCGGCAAACATCCAGCTTATC
JMFF005D12+           GCTCCATTTACAACATAGTTCATGAATCAATATAATCGATCGGCAAACATCCAGCTTATC
JMFF002G16+           GCTCCATTTACAACATAGTTCATGAATCAATATAATCGATCGGCAAACATCCAGCTTATC
JMFF046I13+           GCTCCATTTACAACATAGTTCATGAATCAATATAATCGATCGGCAAACATCCAGCTTATC
JMSF031G23+           GCTCCATTTACAACATAGTTCATGAATCAATATAATCGATCGGCAAACATCCAGCTTATC
                      ____________________________________________________________
consensus             GCTCCATTTACAACATAGTTCATGAATCAATATAATCGATCGGCAAACATCCAGCTTATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050A09-          TCGCCCATCA                                                  
rJMSF050B09-          TCGCCCATCAACCATCG                                           
JMSF028H20+           TCGCCCATCAACCATCGGACTCCCAAAAGCTATGCTCCCGTTCTCCATAGTAATGGAGCA
JMSF050A09+           TCGCCCATCAACCATCGGACTCCCAAAAGCTATGCTCCCGTTCTCCATAGTAATGGAGCA
JMFS139E06+           TCGCCCATCAACCATCGGACTCCCAAAAGCTATGCTCCCGTTCTCCATAGTAATGGAGCA
JMFF045O16+           TCGCCCATCAACCATCGGACTCCCAAAAGCTATGCTCCCGTTCTCCATAGTAATGGAGCA
JMSF050B09+           TCGCCCATCAACCATCGGACTCCCAAAAGCTATGCTCCCGTTCTCCATAGTAATGGAGCA
JMSF041K14+           TCGCCCATCAACCATCGGACTCCCAAAAGCTATGCTCCCGTTCTCCATAGTAATGGAGCA
JMSF025B02+           TCGCCCATCAACCATCGGACTCCCAAAAGCTATGCTCCCGTTCTCCATAGTAATGGAGCA
JMSF052L02+           TCGCCCATCAACCATCGGACTCCCAAAAGCTATGCTCCCGTTCTCCATAGTAATGGAGCA
JMFS048G10+           TCGCCCATCAACCATCGGACTCCCAAAAGCTATGCTCCCGTTCTCCATAGTAATGGAGCA
JMSF012I10+           TCGCCCATCAACCATCGGACTCCCAAAAGCTATGCTCCCGTTCTCCATAGTAATGGAGCA
JMFF006D07+           TCGCCCATCAACCATCGGACTCCCAAAAGCTATGCTCCCGTTCTCCATAGTAATGGAGCA
JMFF031J17+           TCGCCCATCAACCATCGGACTCCCAAAAGCTATGCTCCCGTTCTCCATAGTAATGGAGCA
JMFF023M02+           TCGCCCATCAACCATCGGACTCCCAAAAGCTATGCTCCCGTTCTCCATAGTAATGGAGCA
JMFF005L23+           TCGCCCATCAACCATCGGACTCCCAAAAGCTATGCTCCCGTTCTCCATAGTAATGGAGCA
JMFF007H08+           TCGCCCATCAACCATCGGACTCCCAAAAGCTATGCTCCCGTTCTCCATAGTAATGGAGCA
JMFF005D12+           TCGCCCATCAACCATCGGACTCCCAAAAGCTATGCTCCCGTTCTCCATAGTAATGGAGCA
JMFF002G16+           TCGCCCATCAACCATCGGACTCCCAAAAGCTATGCTCCCGTTCTCCATAGTAATGGAGCA
JMSF005H12+                                      AGCTATGCTCCCGTTCTCCATAGTAATGGAGCA
JMFF046I13+           TCGCCCATCAACCATCGGACTCCCAAAAGCTATGCTCCCGTTCTCCATAGTAATGGAGCA
JMSF031G23+           TCGCCCATCAACCATCGGACTCCCAAAAGCTATGCTCCCGTTCTCCATAGTAATGGAGCA
                      ____________________________________________________________
consensus             TCGCCCATCAACCATCGGACTCCCAAAAGCTATGCTCCCGTTCTCCATAGTAATGGAGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF028H20+           GAACCGACGCATGCCCTGTAACTTGAGCTGTAGATCTCACAGAAAACCTCATTCGACTCA
JMSF050A09+           GAACCGACGCATGCCCTGTAACTTGAGCTGTAGATCTCACAGAAAACCTCATTCGACTCA
JMFS139E06+           GAACCGACGCATGCCCTGTAACTTGAGCTGTAGATCTCACAGAAAACCTCATTCGACTCA
JMFF045O16+           GAACCGACGCATGCCCTGTAACTTGAGCTGTAGATCTCACAGAAAACCTCATTCGACTCA
JMSF050B09+           GAACCGACGCATGCCCTGTAACTTGAGCTGTAGATCTCACAGAAAACCTCATTCGACTCA
JMSF041K14+           GAACCGACGCATGCCCTGTAACTTGAGCTGTAGATCTCACAGAAAACCTCATTCGACTCA
JMSF025B02+           GAACCGACGCATGCCCTGTAACTTGAGCTGTAGATCTCACAGAAAACCTCATTCGACTCA
JMSF052L02+           GAACCGACGCATGCCCTGTAACTTGAGCTGTAGATCTCACAGAAAACCTCATTCGACTCA
JMFS048G10+           GAACCGACGCATGCCCTGTAACTTGAGCTGTAGATCTCACAGAAAACCTCATTCGACTCA
JMSF012I10+           GAACCGACGCATGCCCTGTAACTTGAGCTGTAGATCTCACAGAAAACCTCATTCGACTCA
JMFF006D07+           GAACCGACGCATGCCCTGTAACTTGAGCTGTAGATCTCACAGAAAACCTCATTCGACTCA
JMFF031J17+           GAACCGACGCATGCCCTGTAACTTGAGCTGTAGATCTCACAGAAAACCTCATTCGACTCA
JMFF023M02+           GAACCGACGCATGCCCTGTAACTTGAGCTGTAGATCTCACAGAAAACCTCATTCGACTCA
JMFF005L23+           GAACCGACGCATGCCCTGTAACTTGAGCTGTAGATCTCACAGAAAACCTCATTCGACTCA
JMFF007H08+           GAACCGACGCATGCCCTGTAACTTGAGCTGTAGATCTCACAGAAAACCTCATTCGACTCA
JMFF005D12+           GAACCGACGCATGCCCTGTAACTTGAGCTGTAGATCTCACAGAAAACCTCATTCGACTCA
JMFF002G16+           GAACCGACGCATGCCCTGTAACTTGAGCTGTAGATCTCACAGAAAACCTCATTCGACTCA
JMSF005H12+           GAACCGACGCATGCCCTGTAACTTGAGCTGTAGATCTCACAGAAAACCTCATTCGACTCA
JMFF046I13+           GAACCGACGCATGCCCTGTAACTTGAGCTGTAGATCTCACAGAAAACCTCATTCGACTCA
JMSF031G23+           GAACCGACGCATGCCCTGTAACTTGAGCTGTAGATCTCACAGAAAACCTCATTCGACTCA
                      ____________________________________________________________
consensus             GAACCGACGCATGCCCTGTAACTTGAGCTGTAGATCTCACAGAAAACCTCATTCGACTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF028H20+           AACTGCTAAGGTATGGGACAATAATCTGCCTCGAATCGATGAAGTTCAGAACAATCAATC
JMSF050A09+           AACTGCTAAGGTATGGGACAATAATCTGCCTNGAATCGATGAAGTTCAGAACAATCAATC
JMFS139E06+           AACTGCTAAGGTATGGGACAATAATCTGCCTCGAATCGATGAAGTTCAGAACAATCAATC
JMFF045O16+           AACTGCTAAGGTATGGGACAATAATCTGCCTCGAATCGATGAAGTTCAGAACAATCAATC
JMSF050B09+           AACTGCTAAGGTATGGGACAATAATCTGCCTCGAATCGATGAAGTTCAGAACAATCAATC
JMSF041K14+           AACTGCTAAGGTATGGGACAATAATCTGCCTCGAATCGATGAAGTTCAGAACAATCAATC
JMSF025B02+           AACTGCTAAGGTATGGGACAATAATCTGCCTCGAATCGATGAAGTTCAGAACAATCAATC
JMSF052L02+           AACTGCTAAGGTATGGGACAATAATCTGCCTCGAATCGATGAAGTTCAGAACAATCAATC
JMFS048G10+           AACTGCTAAGGTATGGGACAATAATCTGCCTCGAATCGATGAAGTTCAGAACAATCAATC
JMSF012I10+           AACTGCTAAGGTATGGGACAATAATCTGCCTCGAATCGATGAAGTTCAGAACAATCAATC
JMFF006D07+           AACTGCTAAGGTATGGGACAATAATCTGCCTCGAATCGATGAAGTTCAGAACAATCAATC
JMFF031J17+           AACTGCTAAGGTATGGGACAATAATCTGCCTCGAATCGATGAAGTTCAGAACAATCAATC
JMFF023M02+           AACTGCTAAGGTATGGGACAATAATCTGCCTCGAATCGATGAAGTTCAGAACAATCAATC
JMFF005L23+           AACTGCTAAGGTATGGGACAATAATCTGCCTCGAATCGATGAAGTTCAGAACAATCAATC
JMFF007H08+           AACTGCTAAGGTATGGGACAATAATCTGCCTCGAATCGATGAAGTTCAGAACAATCAATC
JMFF005D12+           AACTGCTAAGGTATGGGACAATAATCTGCCTCGAATCGATGAAGTTCAGAACAATCAATC
JMFF002G16+           AACTGCTAAGGTATGGGACAATAATCTGCCTCGAATCGATGAAGTTCAGAACAATCAATC
JMSF005H12+           AACTGCTAAGGTATGGGACAATAATCTGCCTCGAATCGATGAAGTTCAGAACAATCAATC
JMFF046I13+           AACTGCTAAGGTATGGGACAATAATCTGCCTCGAATCGATGAAGTTCAGAACAATCAATC
JMSF031G23+           AACTGCTAAGGTATGGGACAATAATCTGCCTCGAATCGATGAAGTTCAGAACAATCAATC
                      ____________________________________________________________
consensus             AACTGCTAAGGTATGGGACAATAATCTGCCTCGAATCGATGAAGTTCAGAACAATCAATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF028H20+           AATCTTCATATCCACGAGCAAAAAACGGTGGGATTGAGAGCAACCATAGCCCGTCCGTGG
JMSF050A09+           AATCTTCATATCCACGAGCAAAAAACGGTGGGATTGAGAGCAACCATAGCCCGTCCGTGG
JMFS139E06+           AATCTTCATATCCACGAGCAAAAAACGGTGGGATTGAGAGCAACCATAGCCCGTCCGTGG
JMFF045O16+           AATCTTCATATCCACGAGCAAAAAACGGTGGGATTGAGAGCAACCATAGCCCGTCCGTGG
JMSF050B09+           AATCTTCATATCCACGAGCAAAAAACGGTGGGATTGAGAGCAACCATAGCCCGTCCGTGG
JMSF041K14+           AATCTTCATATCCACGAGCAAAAAACGGTGGGATTGAGAGCAACCATAGCCCGTCCGTGG
JMSF025B02+           AATCTTCATATCCACGAGCAAAAAACGGTGGGATTGAGAGCAACCATAGCCCGTCCGTGG
JMSF052L02+           AATCTTCATATCCACGAGCAAAAAACGGTGGGATTGAGAGCAACCATAGCCCGTCCGTGG
JMFS048G10+           AATCTTCATATCCACGAGCAAAAAACGGTGGGATTGAGAGCAACCATAGCCCGTCCGTGG
JMSF012I10+           AATCTTCATATCCACGAGCAAAAAACGGTGGGATTGAGAGCAACCATAGCCCGTCCGTGG
JMFF006D07+           AATCTTCATATCCACGAGCAAAAAACGGTGGGATTGAGAGCAACCATAGCCCGTCCGTGG
JMFF031J17+           AATCTTCATATCCACGAGCAAAAAACGGTGGGATTGAGAGCAACCATAGCCCGTCCGTGG
JMFF023M02+           AATCTTCATATCCACGAGCAAAAAACGGTGGGATTGAGAGCAACCATAGCCCGTCCGTGG
JMFF005L23+           AATCTTCATATCCACGAGCAAAAAACGGTGGGATTGAGAGCAACCATAGCCCGTCCGTGG
JMFF007H08+           AATCTTCATATCCACGAGCAAAAAACGGTGGGATTGAGAGCAACCATAGCCCGTCCGTGG
JMFF005D12+           AATCTTCATATCCACGAGCAAAAAACGGTGGGATTGAGAGCAACCATAGCCCGTCCGTGG
JMFF002G16+           AATCTTCATATCCACGAGCAAAAAACGGTGGGATTGAGAGCAACCATAGCCCGTCCGTGG
JMSF005H12+           AATCTTCATATCCACGAGCAAAAAACGGTGGGATTGAGAGCAACCATAGCCCGTCCGTGG
JMFF046I13+           AATCTTCATATCCACGAGCAAAAAACGGTGGGATTGAGAGCAACCATAGCCCGTCCGTGG
JMSF031G23+           AATCTTCATATCCACGAGCAAAAAACGGTGGGATTGAGAGCAACCATAGCCCGTCCGTGG
                      ____________________________________________________________
consensus             AATCTTCATATCCACGAGCAAAAAACGGTGGGATTGAGAGCAACCATAGCCCGTCCGTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF028H20+           AAATCACGCGCCAAAGAGCTAAGCAAATTGGGTTCTGACTTCTGAGCCTC          
JMSF050A09+           AAATCACGCGCCAAAGAGCTAAGCAAATTGGGTTCTGACTTNTGAGCCTCCTAG      
JMFS139E06+           AAATCACGCGCCAAAGAGCTAAGCAAATTGGGTTCTGA                      
JMFF045O16+           AAATCACGCGCCAAAGAGCTAAGCAAATT                               
JMSF050B09+           AAATCACGCGCCAAAGAGCTAAGCAAATTGGGTTCTGACTTCTGAGCCTCCTAG      
JMSF041K14+           AAATCACGCGCCAAAGAGCTAAGCAAATTGGGTTCTGACTTCTGAGCCTCCTAGGC    
JMSF025B02+           AAATCACGCGCCAAAGAGCTAAGCAAATTGGGTTCTGACTTCTGAGCCTCCTAGGCAA  
JMSF052L02+           AAATCACGCGCCAAAGAGCTAAGCAAATTGGGTTCTGACTTCTGAGCCTCCTAGG     
JMFS048G10+           AAATCACGCGCCAAAGAGCTAAGCAAATTGGGTTCTGACT                    
JMSF012I10+           AAATCACGCGCCAAAGAGCTAAGCAAATTGGGTTCTGACTTCTGAGCCTCCTAGGC    
JMFF006D07+           AAATCACGCGCCAAAGAGCTAAGCAAATTGGGTTCTGACTTCTGAGCCTCCTAGGCAAT 
JMFF031J17+           AAATCACGCGCCAAAGAGCTAAGCAAATTGGGTTCTGACTTCTGAGCCTCCTAGGCAAT 
JMFF023M02+           AAATCACGCGCCAAAGAGCTAAGCAAATTGGGTTCTGACTTCTGAGCCTCCTAGGCAAT 
JMFF005L23+           AAATCACGCGCCAAAGAGCTAAGCAAATTGGGTTCTGACTTCTGAGCCTCCTAGGCAAT 
JMFF007H08+           AAATCACGCGCCAAAGAGCTAAGCAAATT                               
JMFF005D12+           AAATCACGCGCCAAAGAGCTAAGCAAATTGGGTTCTGACTTCTGAGCCTCCTAGGCAAT 
JMFF002G16+           AAATCACGCGCCAAAGAGCTAAGCAAATTGGGTTCTGACTTCTGAGCCTCCTAGGCAAT 
JMSF005H12+           AAATCACGCGCCAAAGAGCTAAGCAAATTGGGTTCTGACTTCTGAGCCTCCTAGGCAA  
JMFF046I13+           AAATCACGCGCCAAAGAGCTAAGCAAATTGGGTTCTGACTTCTGAGCCTCCTAGGCAAT 
JMSF031G23+           AAATCACGCGCCAAAGAGCTAAGCAAATTGGGTTCTGACTTCTGAGCCTCCTAGGCAATC
                      ____________________________________________________________
consensus             AAATCACGCGCCAAAGAGCTAAGCAAATTGGGTTCTGACTTCTGAGCCTCCTAGGCAATC