| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF029N08 | Sequence | 435 | 005158 (9) | ref|XP_011093881.1| | 3e-51 | PREDICTED: peroxiredoxin Q, chloroplastic [Sesamum indicum] | 690 | 005158 (9) | sp|Q6QPJ6.1|PRXQ_POPJC | 5e-100 | RecName: Full=Peroxiredoxin Q, chloroplastic; AltName: Full=Thioredoxin reducta |
| JMFN016F04 | Sequence | 605 | 005158 (9) | ref|XP_011093881.1| | 2e-87 | PREDICTED: peroxiredoxin Q, chloroplastic [Sesamum indicum] | |||||
| JMSF006N10 | Sequence | 267 | 005158 (9) | ref|XP_011093881.1| | 2e-07 | PREDICTED: peroxiredoxin Q, chloroplastic [Sesamum indicum] | |||||
| JMSF017H14 | Sequence | 418 | 005158 (9) | sp|Q6QPJ6.1|PRXQ_POPJC | 5e-71 | RecName: Full=Peroxiredoxin Q, chloroplastic; AltName: Full=Thioredoxin reducta | |||||
| JMSF030J23 | Sequence | 347 | 005158 (9) | ref|XP_008367978.1| | 2e-18 | PREDICTED: peroxiredoxin Q, chloroplastic-like [Malus domestica] | 291 | 005158 (9) | ref|XP_008367978.1| | 8e-19 | PREDICTED: peroxiredoxin Q, chloroplastic-like [Malus domestica] |
| JMSF037K20 | Sequence | 486 | 022190 | emb|CDP01995.1| | 7e-47 | unnamed protein product [Coffea canephora] | 706 | 005158 (9) | ref|XP_007012557.1| | 3e-100 | Thioredoxin superfamily protein, Q [Theobroma cacao] gb|EOY30176.1| Thioredoxin |
| JMSF037L20 | Sequence | 652 | 005158 (9) | ref|XP_007012557.1| | 6e-96 | Thioredoxin superfamily protein, Q [Theobroma cacao] gb|EOY30176.1| Thioredoxin | |||||
This contig is upended
. : . : . : . : . : . :
JMSF006N10- GGCAATGTTCGTTT
____________________________________________________________
consensus GGCAATGTTCGTTT
. : . : . : . : . : . :
JMSF006N10- TCCTCACAAGGAACACANATTCTTTATCATCTTTTTTTTTCCCCAGAAATGGCCACTTTT
JMFF029N08- ATTCTTTATCATCTTTTTTTTTCCCCAGAAATGGCCACTTTT
____________________________________________________________
consensus TCCTCACAAGGAACACANATTCTTTATCATCTTTTTTTTTCCCCAGAAATGGCCACTTTT
. : . : . : . : . : . :
JMSF006N10- TCTCTTTCTGCTAATCACATTCTTCCTTCNCTACTCCATGCTCAATCCCCTCAAGCCAAT
JMFF029N08- TCTCTTTCTGCTAATCACATTCTTCCTTCTCTACTCCATGCTCAATCCCCTCAAGCCAAT
JMFN016F04- CTCTTTCTGCTAATCACATTCTTCCTTCTCTACTCCATGCTCAATCCCCTCAAGCCAAT
____________________________________________________________
consensus TCTCTTTCTGCTAATCACATTCTTCCTTCTCTACTCCATGCTCAATCCCCTCAAGCCAAT
. : . : . : . : . : . :
JMSF006N10- CTCCCTCAAACCCTCAATTTCGTCCCCAAATCTTCACAATCCCAGTTTTATGGTCTCAAG
JMFF029N08- CTCCCTCAAACCCTCAATTTCGTCCCCAAATCTTCACAATCCCAGTTTTATGGTCTCAAG
JMFN016F04- CTCCCTCAAACCCTCAATTTCGTCCCCAAATCTTCACAATCCCAGTTTTATGGTCTCAAG
rJMFF029N08+ GTCCCCAAATCTTCACAATCCCAGTTTTATGGTCTCAAG
____________________________________________________________
consensus CTCCCTCAAACCCTCAATTTCGTCCCCAAATCTTCACAATCCCAGTTTTATGGTCTCAAG
. : . : . : . : . : . :
JMSF006N10- CTTCTCCANGCCTCTTCCCTTTCAAAGCCCTCATTTTCTTCCTCTTCAACAAAAAGCTCC
JMFF029N08- CTTCTCCACGCCTCTTCCCTTTCAAAGCCCTCATTTTCTTCCTCTTCAACAAAAAGCTCC
rJMSF017H14+ TCAAAGCCTTCATNTTCTTCCTCTTCAACAAAAAGCTCC
JMFN016F04- CTTCTCCACGCCTCTTCCCTTTCAAAGCCCTCATTTTCTTCCTCTTCAACAAAAAGCTCC
rJMFF029N08+ CTTCTCCACGCCTCTTCCCTTTCAAAGCCCTCATTTTCTTCCTCTTCAACAAAAAGCTCC
____________________________________________________________
consensus CTTCTCCACGCCTCTTCCCTTTCAAAGCCCTCATTTTCTTCCTCTTCAACAAAAAGCTCC
. : . : . : . : . : . :
JMSF006N10- ATTTTTGCTAAGG
JMFF029N08- ATTTTTGCTAAGGTAACTAAGGGTTCAGTGCCACCATCATTTACATTGAAAGATCAAGCT
rJMSF017H14+ ATTTTTGCTAAGGTAACTAAGGGTTCAGNGCCNCCATCATTTACATTGAAAGATCAAGCT
JMFN016F04- ATTTTTGCTAAGGTAACTAAGGGTTCAGTGCCACCATCATTTACATTGAAAGATCAAGCT
rJMFF029N08+ ATTTTTGCTAAGGTAACTAAGGGTTCAGTGCCACCATCATTTACATTGAAAGATCAAGCT
rJMSF037L20+ TTTACATTGAAAGATCAAGAT
rJMSF037K20+ TTTACATTGAAAGATCAAGAT
____________________________________________________________
consensus ATTTTTGCTAAGGTAACTAAGGGTTCAGTGCCACCATCATTTACATTGAAAGATCAAGCT
. : . : . : . : . : . :
JMFF029N08- GGAAGAAATGTGACCCTCTCCAAGTTCAAAGGAAAGCCTATTGTGGTTTATTTCTACCCT
rJMSF017H14+ GGAAGAAATGTGACCCTCTCCAAGTTCAAAGGAAAGCCTATTGTGGTTTATTTCTACCCT
JMFN016F04- GGAAGAAATGTGACCCTCTCCAAGTTCAAAGGAAAGCCTATTGTGGTTTATTTCTACCCT
rJMFF029N08+ GGAAGAAATGTGACCCTCTCCAAGTTCAAAGGAAAGCCTATTGTGGTTTATTTCTACCCT
rJMSF037L20+ GGGAGAAATGTGAGCCTGTCCAAGTTCAAAGGCAAGCCTGTGGTGGTCTATTTCTACCCT
rJMSF037K20+ GGGAGAAATGTGAGCCTGTCCAAGTTCAAAGGCAAGCCTGTGGTGGTCTATTTCTACCCT
____________________________________________________________
consensus GGAAGAAATGTGACCCTCTCCAAGTTCAAAGGAAAGCCTATTGTGGTTTATTTCTACCCT
. : . : . : . : . : . :
JMFF029N08- GCTGATGACACTCCTGGTTGTACCAAACAGGCCTGTTCATTCAGGGATTCATATGAGAAA
rJMSF017H14+ GCTGATGACANTCCTGGTTGTACCAAACAGGCCTGTTCATTCAGGGATTCATATGAGAAA
JMFN016F04- GCTGATGACACTCCTGGTTGTACCAAACAGGCCTGTTCATTCAGGGATTCATATGAGAAA
rJMFF029N08+ GCTGATGACACTCCTGGTTGTACCAAACAGGCCTGTTCATTCAGGGATTCATATGAGAAA
rJMSF037L20+ GCTGATGAAACTCCTGGCTGCACCAAACAGGCCTGTGCCTTCAGGGACTCTTACGAGAAA
rJMSF037K20+ GCTGATGAAACTCCTGGCTGCACCAAACAGGCCTGTGCCTTCAGGGACTCTTACGAGAAA
____________________________________________________________
consensus GCTGATGACACTCCTGGTTGTACCAAACAGGCCTGTTCATTCAGGGATTCATATGAGAAA
. : . : . : . : . : . :
JMFF029N08- TTCAAGAAAGCCGGAGCTGAAGTTGTTGGGA
rJMSF017H14+ TTCAAGAAAGCCGGAGCTGAAGTTGNTGGGATTAGCGGTGATAATCCTTCCTCCCATAAG
JMFN016F04- TTCAAGAAAGCCGGAGCTGAAGTTGTTGGGATTAGCGGTGATAATCCTTCCTCCCATAAG
rJMFF029N08+ TTCAAGAAAGCCGGAGCTGAAGTTGTTGGGATTAGCGGTGATAATCCTTCCTCCCATAAG
rJMSF037L20+ TTCAAGAAAGCAGGAGCTGAAGTTGTCGGGATTAGCGGGGATGATACATCATCCCACAAG
rJMSF037K20+ TTCAAGAAAGCAGGAGCTGAAGTTGTCGGGATTAGCGGGGATGATACATCATCCCACAAG
____________________________________________________________
consensus TTCAAGAAAGCCGGAGCTGAAGTTGTTGGGATTAGCGGTGATAATCCTTCCTCCCATAAG
. : . : . : . : . : . :
rJMSF017H14+ GCCTNTGCAGAAAAATACAAACTTCCATTCACGTTGNTAAGTGACGAAGGCAACAATGTA
JMFN016F04- GCCTTTGCAGAAAAATACAAACTTCCATTCACGTTGCTAAGTGACGAAGGCAACAATGTA
rJMFF029N08+ GCCTTTGCAGAAAAATACAAACTTCCATTCACGTTGCTAAGTGACGAAGGCAACAATGTA
rJMSF037L20+ GCCTTTGCCAAGAAATATAGACTTCCATTTACACTGCTAAGTGATGAAGGGGACAAGGTG
rJMSF037K20+ GCCTTTGCCAAGAAATATAGACTTCCATTTACACTGCTAAGTGATGAAGGGGACAAGGTG
____________________________________________________________
consensus GCCTTTGCAGAAAAATACAAACTTCCATTCACGTTGCTAAGTGACGAAGGCAACAATGTA
. : . : . : . : . : . :
rJMSF017H14+ AGAAAAGAGTGGGGAGTCCCTGCAGACCTCTTCGGTGCATTGCCTGGGCGACAAACTTAT
JMFN016F04- AGAAAAGAGTGGGGAGTCCCTGCAGACCTCTTCGGTGCATTGCCTGGGCGACAAACTTAT
rJMFF029N08+ AGAAAAGAGTGGGGAGTCCCTGCAGACCTCTTCGGTGCATTGCCTGGGCGACAAACTTAT
rJMSF037L20+ AGGAAAGAGTGGGGAGTCCCCTCAGATCTTTTTGGTGCATTGCCTGGAAGACAGACCTAT
rJMSF030J23+ GAGTCCCCTCAGATCTTTTTGGTGCATTGCCTGGAAGACAGACCTAT
rJMSF037K20+ AGGAAAGAGTGGGGAGTCCCCTCAGATCTTTTTGGTGCATTGCCTGGAAGACAGACCTAT
JMSF030J23- GAGTCCCCTCAGATCTTTTTGGTGCATTGCCTGGAAGACAGACCTAT
____________________________________________________________
consensus AGAAAAGAGTGGGGAGTCCCCTCAGATCTTTTTGGTGCATTGCCTGGAAGACAGACCTAT
. : . : . : . : . : . :
rJMSF017H14+ GTTCTTGA
JMFN016F04- GTTCTTGACAAGAA
rJMFF029N08+ GTTCTTGACAAGAAAGGAGTGGTCCAACTCATCTATAACAATCAATTCCAGCCCGAAAAA
rJMSF037L20+ GTTCTTGACAAGAATGGAGTCGTCCAACTCATCTATAACAATCAGTTCCAGCCCGAAAAG
rJMSF030J23+ GTTCTTGACAAGAATGGAGTCGTCCAACTCATCTATAACAATCAGTTCCAGCCCGAAAAG
rJMSF037K20+ GTTCTTGACAAGAATGGAGTCGTCCAACTCATCTATAACAATCAGTTCCAGCCCGAAAAG
JMSF030J23- GTTCTTGACAAGAATGGAGTCGTCCAACTCATCTATAACAATCAGTTCCAGCCCGAAAAG
____________________________________________________________
consensus GTTCTTGACAAGAATGGAGTCGTCCAACTCATCTATAACAATCAGTTCCAGCCCGAAAAG
. : . : . : . : . : . :
rJMFF029N08+ CATATTGACGAGACATTGAAGCTACTCCAAAGTCTTTAA
rJMSF037L20+ CATATTGATGAGACTTTGAAGCTCCTTCAAAGTCTTTAATCATACCTCCAAATTCTTTCT
rJMSF030J23+ CATATTGATGAGACTTTGAAGCTCCTTCAAAGTCTTTAATCATACCTCCAAATTCTTTCT
rJMSF037K20+ CATATTGATGAGACTTTGAAGCTCCTTCAAAGTCTTTAATCATACCTCCAAATTCTTTCT
JMSF030J23- CATATTGATGAGACTTTGAAGCTCCTTCAAAGTCTTTAATCATACCTCCAAATTCTTTCT
____________________________________________________________
consensus CATATTGATGAGACTTTGAAGCTCCTTCAAAGTCTTTAATCATACCTCCAAATTCTTTCT
. : . : . : . : . : . :
rJMSF037L20+ TATGTTCTTTCTGTATGAGATAGAATATCTTATCTCTCCCTAATTATGTATGTATCTGCC
rJMSF030J23+ TATGTTCTTTCTGTATGAGATAGAATATCTTATCTCTCCCTAATTATGTATGTATCTGCC
rJMSF037K20+ TATGTTCTTTCTGTATGAGATAGAATATCTTATCTCTCCCTAATTATGTATGTATCTGCC
JMSF030J23- TATGTTCTTTCTGTATGAGATAGAATATCTTATCTCTCCCTAATTATGTATGTATCTGCC
____________________________________________________________
consensus TATGTTCTTTCTGTATGAGATAGAATATCTTATCTCTCCCTAATTATGTATGTATCTGCC
. : . : . : . : . : . :
rJMSF037L20+ AACACTAATCAAGTGTTCTTGAGTTCTCGAGATTAGTCTAATACTGCCTTACCGGAAATA
rJMSF030J23+ AACACTAATCAAGTGTTCTTGAGTTCTCGAGATTAGTCTAATACTGCCTTACCGGAAATA
rJMSF037K20+ AACACTAATCAAGTGTTCTTGAGTTCTCGAGATTAGTCTAATACTGCCTTACCGGAAATA
JMSF030J23- AACACTAATCAAGTGTTCTTGAGTTCTCGAGATTAGTCTAATACTGCCTTACCGGAAATA
____________________________________________________________
consensus AACACTAATCAAGTGTTCTTGAGTTCTCGAGATTAGTCTAATACTGCCTTACCGGAAATA
. : . : . : . : . : . :
rJMSF037L20+ CTAT
rJMSF030J23+ CTAT
rJMSF037K20+ CTAT
JMSF030J23- CTATTCCATAATGAATCTATACTGCAAACTAAACATGCTATTAGTCTCTCANAAAAAAAA
____________________________________________________________
consensus CTATTCCATAATGAATCTATACTGCAAACTAAACATGCTATTAGTCTCTCANAAAAAAAA