Contig 005136:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS065D09Sequence626005136 (6)ref|NP_001234234.1|5e-50chloroplast threonine deaminase 1 precursor [Solanum lycopersicum] gb|ABK20067.1
JMFS084A05Sequence625005136 (6)ref|NP_001234234.1|5e-50chloroplast threonine deaminase 1 precursor [Solanum lycopersicum] gb|ABK20067.1
JMSF015K24Sequence153005136 (6)658005710 (3)ref|XP_009774928.1|2e-46PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Nicotiana sylvest
JMSF020I12Sequence669005136 (6)ref|XP_006339100.1|4e-56PREDICTED: threonine dehydratase biosynthetic, chloroplastic-like [Solanum tube717005710 (3)ref|XP_009774928.1|1e-71PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Nicotiana sylvest
JMSF028O05Sequence656005136 (6)ref|XP_006339100.1|2e-53PREDICTED: threonine dehydratase biosynthetic, chloroplastic-like [Solanum tube719005710 (3)ref|XP_009774928.1|7e-74PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Nicotiana sylvest
JMSF037K04Sequence671005136 (6)ref|XP_006339100.1|3e-56PREDICTED: threonine dehydratase biosynthetic, chloroplastic-like [Solanum tube729019388ref|XP_009774928.1|6e-69PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Nicotiana sylvest

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF020I12+ CAGGTGTAG
JMSF037K04+ CTCAGGTGTAG
                      ____________________________________________________________
consensus CTCAGGTGTAG
 
. : . : . : . : . : . :
JMSF020I12+ TAACAGGCATTACAATCACAGCATCACACCCAAGTTTCTGTGCAGATAAAGCAACCCCTT
JMSF037K04+ TAACAGGCATTACAATCACAGCATCACACCCAAGTTTCTGTGCAGATAAAGCAACCCCTT
JMFS065D09+ CAGCATCACACCCAAGTTTCTGTGCAGATAAAGCAACCCCTT
JMFS084A05+ AGCATCACACCCAAGTTTCTGTGCAGATAAAGCAACCCCTT
JMSF028O05+ AGGCATTACAATCACAGCATCACACCCAAGTTTCTGTGCAGATAAAGCAACCCCTT
                      ____________________________________________________________
consensus TAACAGGCATTACAATCACAGCATCACACCCAAGTTTCTGTGCAGATAAAGCAACCCCTT
 
. : . : . : . : . : . :
JMSF020I12+ GGGCATGATTACCAGCAGATGCACAGATAACTCCTTTATCCAATTCCTCCTTTGTGAGCT
JMSF037K04+ GGGCATGATTACCAGCAGATGCACAGATAACTCCTTTATCCAATTCCTCCTTTGTGAGCT
JMFS065D09+ GGGCATGATTACCAGCAGATGCACAGATAACTCCTTTATCCAATTCCTCCTTTGTGAGCT
JMFS084A05+ GGGCATGATTACCAGCAGATGCACAGATAACTCCTTTATCCAATTCCTCCTTTGTGAGCT
JMSF028O05+ GGGCATGATTACCAGCAGATGCACAGATAACTCCTTTATCCAATTCCTCCTTTGTGAGCT
                      ____________________________________________________________
consensus GGGCATGATTACCAGCAGATGCACAGATAACTCCTTTATCCAATTCCTCCTTTGTGAGCT
 
. : . : . : . : . : . :
JMSF020I12+ TAGCCATCATATTATAAGCTCCTCGAATTTTGAATGAGAAGATAGGTTGAAGATCCTCCC
JMSF037K04+ TAGCCATCATATTATAAGCTCCTCGAATTTTGAATGAGAAGATAGGTTGAAGATCCTCCC
JMFS065D09+ TAGCCATCATATTATAAGCTCCTCGAATTTTGAATGAGAAGATAGGTTGAAGATCCTCCC
JMFS084A05+ TAGCCATCATATTATAAGCTCCTCGAATTTTGAATGAGAAGATAGGTTGAAGATCCTCCC
JMSF028O05+ TAGCCATCATATTATAAGCTCCTCGAATTTTGAATGAGAAGATAGGTTGAAGATCCTCCC
                      ____________________________________________________________
consensus TAGCCATCATATTATAAGCTCCTCGAATTTTGAATGAGAAGATAGGTTGAAGATCCTCCC
 
. : . : . : . : . : . :
JMSF020I12+ TTTTGAACCAGATATTGTTCCCCAGCCTCTCCGTGAGCTTCGAGGCGAGCTGCAATGGCG
JMSF037K04+ TTTTGAACCAGATATTGTTCCCCAGCCTCTCCGTGAGCTTCGAGGCGAGCTGCAATGGCG
JMFS065D09+ TTTTGAACCAGATATTGTTCCCCAGCCTCTCCGTGAGCTTCGAGGCGAGCTGCAATGGCG
JMFS084A05+ TTTTGAACCAGATATTGTTCCCCAGCCTCTCCGTGAGCTTCGAGGCGAGCTGCAATGGCG
JMSF028O05+ TTTTGAACCAGATATTGTTCCCCAGCCTCTCCGTGAGCTTCGAGGCGAGCTGCAATGGCG
                      ____________________________________________________________
consensus TTTTGAACCAGATATTGTTCCCCAGCCTCTCCGTGAGCTTCGAGGCGAGCTGCAATGGCG
 
. : . : . : . : . : . :
JMSF020I12+ ACCGAAGGGCTACATCGTATACCTTAGTGGACAATATCGCGGTCAAATAGTCTACAGCTT
JMSF037K04+ ACCGAAGGGCTACATCGTATACCTTAGTGGACAATATCGCGGTCAAATAGTCTACAGCTT
JMFS065D09+ ACCGAAGGGCTACATCGTATACCTTAGTGGACAATATCGCGGTCAAATAGTCTACAGCTT
JMFS084A05+ ACCGAAGGGCTACATCGTATACCTTAGTGGACAATATCGCGGTCAAATAGTCTACAGCTT
JMSF028O05+ ACCGAAGGGCTACATCGTATACCTTAGTGGACAATATCGCGGTCAAATAGTCTACAGCTT
                      ____________________________________________________________
consensus ACCGAAGGGCTACATCGTATACCTTAGTGGACAATATCGCGGTCAAATAGTCTACAGCTT
 
. : . : . : . : . : . :
JMSF020I12+ CGTAGGTAAATGAATCATTTCCTGGGATGTAACCGGGATTCTCAACAAGGCGTCCAGGCT
JMSF037K04+ CGTAGGTAAATGAATCATTTCCTGGGATGTAACCGGGATTCTCAACAAGGCGTCCAGGCT
JMFS065D09+ CGTAGGTAAATGAATCATTTCCTGGGATGTAACCGGGATTCTCAACAAGGCGTCCAGGCT
JMFS084A05+ CGTAGGTAAATGAATCATTTCCTGGGATGTAACCGGGATTCTCAACAAGGCGTCCAGGCT
JMSF028O05+ CGTAGGTAAATGAATCATTTCCTGGGATGTAACCGGGATTCTCAACAAGGCGTCCAGGCT
                      ____________________________________________________________
consensus CGTAGGTAAATGAATCATTTCCTGGGATGTAACCGGGATTCTCAACAAGGCGTCCAGGCT
 
. : . : . : . : . : . :
JMSF020I12+ CACTGGTCAAGGAGTCCCAAGACACTACCGGCAAGTCATCAGACCGCAACTGCTTCTTGG
JMSF037K04+ CACTGGTCAAGGAGTCCCAAGACACTACCGGCAAGTCATCAGACCGCAACTGCTTCTTGG
JMFS065D09+ CACTGGTCAAGGAGTCCCAAGACACTACCGGCAAGTCATCAGACCGCAACTGCTTCTTGG
JMFS084A05+ CACTGGTCAAGGAGTCCCAAGACACTACCGGCAAGTCATCAGACCGCAACTGCTTCTTGG
JMSF028O05+ CACTGGTCAAGGAGTCCCAAGACACTACCGGCAAGTCATCAGACCGCAACTGCTTCTTGG
                      ____________________________________________________________
consensus CACTGGTCAAGGAGTCCCAAGACACTACCGGCAAGTCATCAGACCGCAACTGCTTCTTGG
 
. : . : . : . : . : . :
JMSF020I12+ CGGCTGTGGGTGTGGTGGACAAAACCGGCGCCTCCGGCCTCGAGACCGCAGCGCGAATTA
JMSF037K04+ CGGCTGTGGGTGTGGTGGACAAAACCGGCGCCTCCGGCCTCGAGACCGCAGCGCGAATTA
JMFS065D09+ CGGCTGTGGGTGTGGTGGACAAAACCGGCGCCTCCGGCCTCGAGACCGCAGCGCGAATTA
JMFS084A05+ CGGCTGTGGGTGTGGTGGACAAAACCGGCGCCTCCGGCCTCGAGACCGCAGCGCGAATTA
JMSF028O05+ CGGCTGTGGGTGTGGTGGACAAAACCGGCGCCTCCGGCCTCGAGACCGCAGCGCGAATTA
                      ____________________________________________________________
consensus CGGCTGTGGGTGTGGTGGACAAAACCGGCGCCTCCGGCCTCGAGACCGCAGCGCGAATTA
 
. : . : . : . : . : . :
JMSF020I12+ AGAAAGCTCCGCTACTCGCTCTCCTTACATCGCCGGCCTTGACGGTGTAATTGGGAGCAA
JMSF037K04+ AGAAAGCTCCGCTACTCGCTCTCCTTACATCGCCGGCCTTGACGGTGTAATTGGGAGCAA
JMFS065D09+ AGAAAGCTCCGCTACTCGCTCTCCTTACATCGCCGGCCTTGACGGTGTAATTGGGAGCAA
JMFS084A05+ AGAAAGCTCCGCTACTCGCTCTCCTTACATCGCCGGCCTTGACGGTGTAATTGGGAGCAA
JMSF015K24+ CATCGCCGGCCTTGACGGTGTAATTGGGAGCAA
JMSF028O05+ AGAAAGCTCCGCTACTCGCTCTCCTTACATCGCCGGCCTTGACGGTGTAATTGGGAGCAA
                      ____________________________________________________________
consensus AGAAAGCTCCGCTACTCGCTCTCCTTACATCGCCGGCCTTGACGGTGTAATTGGGAGCAA
 
. : . : . : . : . : . :
JMSF020I12+ TGGCAGCGGCCGGCGGCAGGGGTTTGCAAAGGAGATAGGGAGATTGTGTAGTGGCGAAAC
JMSF037K04+ TGGCAGCGGCCGGCGGCAGGGGTTTGCAAAGGAGATAGGGAGATTGTGTAGTGGCGAAAC
JMFS065D09+ TGGCAGCGGCCGGCGGCAGGGGTTTGCAAAGGAGATAGGGAGATTGTGTAGTGGCGAAAC
JMFS084A05+ TGGCAGCGGCCGGCGGCAGGGGTTTGCAAAGGAGATAGGGAGATTGTGTAGTGGCGAAAC
JMSF015K24+ TGGCAGCGGCCGGCGGCAGGGGTTTGCAAAGGAGATAGGGAGATTGTGTAGTGGCGAAAC
JMSF028O05+ TGGCAGCGGCCGGCGGCAGGGGTTTGCAAAGGAGATAGGGAGATTGTGTAGTGGCGAAAC
                      ____________________________________________________________
consensus TGGCAGCGGCCGGCGGCAGGGGTTTGCAAAGGAGATAGGGAGATTGTGTAGTGGCGAAAC
 
. : . : . : . : . : . :
JMSF020I12+ GGAGAACGTCCATGGCGGAATGGGTTATGGGAGAGTGGGAGTGATCAAGGAAGCAGGT
JMSF037K04+ GGAGAACGTCCATGGCGGAATGGGTTATGGGAGAGTGGGAGTGATCAAGGAAGCAGGT
JMFS065D09+ GGAGAACGTCCATGGCGGAATGGGTTATGGGAGAGTGGGAGTGA
JMFS084A05+ GGAGAACGTCCATGGCGGAATGGGTTATGGGAGAGTGGGAGTGA
JMSF015K24+ GGAGAACGTCCATGGCGGAATGGNTTATGGGAGAGTGGGAGTGATCAAGGAAGCAGGT
JMSF028O05+ GGAGAACGTCCATGGCGGAATGGGTTATGGGAGAGTGGGAGTGATCAAGGAAGCAGGTTC
                      ____________________________________________________________
consensus GGAGAACGTCCATGGCGGAATGGGTTATGGGAGAGTGGGAGTGATCAAGGAAGCAGGTTC