Contig 005130:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002N08Sequence240005130 (10)emb|CDY37307.1|1e-10BnaA01g25270D [Brassica napus]626005799 (4)
JMSF008P20Sequence239005130 (10)ref|XP_010913619.1|1e-06PREDICTED: RNA-binding protein with multiple splicing-like [Elaeis guineensis]534005799 (4)
JMSF026P03Sequence680005130 (10)emb|CBI25280.3|2e-79unnamed protein product [Vitis vinifera]739005130 (10)gb|KJB69149.1|9e-50hypothetical protein B456_011G008300 [Gossypium raimondii]
JMSF028C10Sequence672005130 (10)emb|CBI25280.3|2e-79unnamed protein product [Vitis vinifera]534005799 (4)
JMSF037A20Sequence712005130 (10)emb|CBI25280.3|3e-79unnamed protein product [Vitis vinifera]707005130 (10)ref|XP_009781707.1|6e-54PREDICTED: cell wall integrity protein scw1-like, partial [Nicotiana sylvestris
JMSF043I22Sequence728005130 (10)emb|CBI25280.3|4e-79unnamed protein product [Vitis vinifera]606005799 (4)
JMSF047G08Sequence680005130 (10)emb|CBI25280.3|6e-79unnamed protein product [Vitis vinifera]778005130 (10)gb|KJB69151.1|7e-50hypothetical protein B456_011G008300 [Gossypium raimondii]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF026P03- AT
                      ____________________________________________________________
consensus AT
 
. : . : . : . : . : . :
rJMSF026P03- GGACAATAAAAATGGTATGAAAGACATCAATACATCTAAGAAAGGAAGCATTCATGACAT
rJMSF037A20- GACAT
rJMSF047G08- GACAT
                      ____________________________________________________________
consensus GGACAATAAAAATGGTATGAAAGACATCAATACATCTAAGAAAGGAAGCATTCATGACAT
 
. : . : . : . : . : . :
rJMSF026P03- CTTAGGTAAATATGGCATAGTGCAAAGTCAAATCACATAATTTCTACACTAAAAATTACA
rJMSF037A20- CTTAGGTAAATATGGCATAGTGCAAAGTCAAATCACATAATTTCTACACTAAAAATTACA
rJMSF047G08- CTTAGGTAAATATGGCATAGTGCAAAGTCAAATCACATAATTTCTACACTAAAAATTACA
                      ____________________________________________________________
consensus CTTAGGTAAATATGGCATAGTGCAAAGTCAAATCACATAATTTCTACACTAAAAATTACA
 
. : . : . : . : . : . :
rJMSF026P03- TGCATCCTTAATATAATATGTTGCAAAAACATGAACCAATGAAGTTAGCTTTTCTTGCCA
rJMSF037A20- TGCATCCTTAATATAATATGTTGCAAAAACATGAACCAATGAAGTTAGCTTTTCTTGCCA
rJMSF047G08- TGCATCCTTAATATAATATGTTGCAAAAACATGAACCAATGAAGTTAGCTTTTCTTGCCA
                      ____________________________________________________________
consensus TGCATCCTTAATATAATATGTTGCAAAAACATGAACCAATGAAGTTAGCTTTTCTTGCCA
 
. : . : . : . : . : . :
rJMSF026P03- TGCCACTGCTTCAAATGCATGCCCTGGGTAAACTATAAGATGGTCCAAGAATATGTTCAT
rJMSF037A20- TGCCACTGCTTCAAATGCATGCCCTGGGTAAACTATAAGATGGTCCAAGAATATGTTCAT
rJMSF047G08- TGCCACTGCTTCAAATGCATGCCCTGGGTAAACTATAAGATGGTCCAAGAATATGTTCAT
                      ____________________________________________________________
consensus TGCCACTGCTTCAAATGCATGCCCTGGGTAAACTATAAGATGGTCCAAGAATATGTTCAT
 
. : . : . : . : . : . :
rJMSF026P03- GATGCAACAGTTTGCATTCATTCACATGAGAAGAGATGCTAATGCTGATGACTTGATGAT
rJMSF037A20- GATGCAACAGTTTGCATTCATTCACATGAGAAGAGATGCTAATGCTGATGACTTGATGAT
rJMSF047G08- GATGCAACAGTTTGCATTCATTCACATGAGAAGAGATGCTAATGCTGATGACTTGATGAT
                      ____________________________________________________________
consensus GATGCAACAGTTTGCATTCATTCACATGAGAAGAGATGCTAATGCTGATGACTTGATGAT
 
. : . : . : . : . : . :
rJMSF026P03- TACATGGATGCATGCAACAGCTGTCCATGATGCATCCTATCATGTAAGGATTTGTATTTG
rJMSF037A20- TACATGGATGCATGCAACAGCTGTCCATGATGCATCCTATCATGTAAGGATTTGTATTTG
rJMSF047G08- TACATGGATGCATGCAACAGCTGTCCATGATGCATCCTATCATGTAAGGATTTGTATTTG
                      ____________________________________________________________
consensus TACATGGATGCATGCAACAGCTGTCCATGATGCATCCTATCATGTAAGGATTTGTATTTG
 
. : . : . : . : . : . :
rJMSF026P03- TCAGAGCATAGAGAACAGAATACATCCCCTTCCAGCTACTGGTAGGTCATAGGTGGTGGA
rJMSF037A20- TCAGAGCATAGAGAACAGAATACATCCCCTTCCAGCTACTGGTAGGTCATAGGTGGTGGA
rJMSF047G08- TCAGAGCATAGAGAACAGAATACATCCCCTTCCAGCTACTGGTAGGTCATAGGTGGTGGA
                      ____________________________________________________________
consensus TCAGAGCATAGAGAACAGAATACATCCCCTTCCAGCTACTGGTAGGTCATAGGTGGTGGA
 
. : . : . : . : . : . :
rJMSF026P03- GCTCCATTTGCAGCAGGGGAAATGTGATTGAAATCCTTCCTTTTTCCAAATGGATTCTTT
rJMSF037A20- GCTCCATTTGCAGCAGGGGAAATGTGATTGAAATCCTTCCTTTTTCCAAATGGATTCTTT
rJMSF047G08- GCTCCATTTGCAGCAGGGGAAATGTGATTGAAATCCTTCCTTTTTCCAAATGGATTCTTT
                      ____________________________________________________________
consensus GCTCCATTTGCAGCAGGGGAAATGTGATTGAAATCCTTCCTTTTTCCAAATGGATTCTTT
 
. : . : . : . : . : . :
rJMSF026P03- GAATATTGAATCCGCATGCCAACAGCACCAGAACTAGGTATAACAGCACCCTGCAAGGTA
JMSF002N08+ ATATTGAATCCGCATGCCAACAGCACCAGAACTAGGTATAACAGCACCCTGCAAGGTA
rJMSF037A20- GAATATTGAATCCGCATGCCAACAGCACCAGAACTAGGTATAACAGCACCCTGCAAGGTA
rJMSF047G08- GAATATTGAATCCGCATGCCAACAGCACCAGAACTAGGTATAACAGCACCCTGCAAGGTA
                      ____________________________________________________________
consensus GAATATTGAATCCGCATGCCAACAGCACCAGAACTAGGTATAACAGCACCCTGCAAGGTA
 
. : . : . : . : . : . :
rJMSF026P03- TGGTGCACATTGGTGGCACTCTGCACATCTTCAAACTCAATGAAACATACAGTATGCCTT
JMSF002N08+ TGGTGCACATTGGTGGCACTCTGCACATCTTC
rJMSF037A20- TGGTGCACATTGGTGGCACTCTGCACATCTTCAAACTCAATGAAACATACAGTATGCCTT
rJMSF047G08- TGGTGCACATTGGTGGCACTCTGCACATCTTCAAACTCAATGAAACATACAGTATGCCTT
                      ____________________________________________________________
consensus TGGTGCACATTGGTGGCACTCTGCACATCTTCAAACTCAATGAAACATACAGTATGCCTT
 
. : . : . : . : . : . :
rJMSF026P03- TCCTGTCTCAATACCTTCATCTGCTTATAACCAGGTTGCACAGTGAACAGGCCCCTCAAC
rJMSF037A20- TCCTGTCTCAATACCTTCATCTGCTTATAACCAGGTTGCACAGTGAACAGGCCCCTCAAC
rJMSF047G08- TCCTGTCTCAATACCTTCATCTGCTTATAACCAGGTTGCACAGTGAACAGGCCCCTCAAC
                      ____________________________________________________________
consensus TCCTGTCTCAATACCTTCATCTGCTTATAACCAGGTTGCACAGTGAACAGGCCCCTCAAC
 
. : . : . : . : . : . :
rJMSF026P03- TCTTCCTCATTTATGTTCTCTCCAAGATTGCCAATGAAAAGGGTATTGCAAGGAGGATTA
rJMSF037A20- TCTTCCTCATTTATGTTCTCTCCNAGATTGCCAATGAAAAGGGTATTGCAAGGAGGATTA
rJMSF047G08- TCTTCCTCATTTATGTTCTCTCCAAGATTGCCAATGAAAAGGGTATTGCAAGGAGGATTA
                      ____________________________________________________________
consensus TCTTCCTCATTTATGTTCTCTCCAAGATTGCCAATGAAAAGGGTATTGCAAGGAGGATTA
 
. : . : . : . : . : . :
rJMSF026P03- TCTTTTGTATTCTGGAC
rJMSF037A20- TCTTTTGTATNCTGGACAGGCACATAGCTGCTTGGTGCTGCA
rJMSF047G08- TCTTTTGTATTCTGGACAGGCACATAGCTGCTTGGTGCTGCAGGCATAGGAGCAGGAACA
JMSF047G08+ GGACAGGCACATAGCTGCTTGGTGCTGCAGGCATAGGAGCAGGAACA
JMSF037A20+ GGACAGGCACATAGCTGCTTGGTGCTGCAGGCATAGGAGCAGGAACA
JMSF026P03+ GGTGCTGCAGGCATAGGAGCAGGAACA
JMSF043I22+ GGACAGGCACATAGCTGCTTGGTGCTGCAGGCATAGGAGCAGGAACA
                      ____________________________________________________________
consensus TCTTTTGTATTCTGGACAGGCACATAGCTGCTTGGTGCTGCAGGCATAGGAGCAGGAACA
 
. : . : . : . : . : . :
rJMSF047G08- GGCATTGGCACAGGAGGAACATGGTAACCAGTATATGGATCATATGGTTGA
JMSF047G08+ GGCATTGGCACAGGAGGAACATGGTAACCAGTATATGGATCATATGGTTGAGGTGGTGGA
JMSF037A20+ GGCATTGGCACAGGAGGAACATGGTAACCAGTATATGGATCATATGGTTGAGGTGGTGGA
JMSF026P03+ GGCATTGGCACAGGAGGAACATGGTAACCAGTATATGGATCATATGGTTGAGGTGGTGGA
JMSF043I22+ GGCATTGGCACAGGAGGAACATGGTAACCAGTATATGGATCATATGGTTGAGGTGGTGGA
                      ____________________________________________________________
consensus GGCATTGGCACAGGAGGAACATGGTAACCAGTATATGGATCATATGGTTGAGGTGGTGGA
 
. : . : . : . : . : . :
JMSF047G08+ GTCATGTACGCAGGTGGCCCCCAAGCTGGTGCAGGAGGGGGGTGAAAAGGAGAGGGGCTA
JMSF037A20+ GTCATGTACGCAGGTGGCCCCCAAGCTGGTGCAGGAGGGGGGTGAAAAGGAGAGGGGCTA
JMSF026P03+ GTCATGTACGCAGGTGGCCCCCAAGCTGGTGCAGGAGGGGGGTGAAAAGGAGAGGGGCTA
JMSF043I22+ GTCATGTACGCAGGTGGCCCCCAAGCTGGTGCAGGAGGGGGGTGAAAAGGAGAGGGGCTA
JMSF028C10+ TACGCAGGTGGCCCCCAAGCTGGTGCAGGAGGGGGGTGAAAAGGAGAGGGGCTA
                      ____________________________________________________________
consensus GTCATGTACGCAGGTGGCCCCCAAGCTGGTGCAGGAGGGGGGTGAAAAGGAGAGGGGCTA
 
. : . : . : . : . : . :
JMSF047G08+ GAGTACCCAGTATGTGTATAATCACCGCCAGTCCGCATCCGTTTGCTCTGGTCATAAGCA
JMSF037A20+ GAGTACCCAGTATGTGTATAATCACCGCCAGTCCGCATCCGTTTGCTCTGGTCATAAGCA
JMSF026P03+ GAGTACCCAGTATGTGTATAATCACCGCCAGTCCGCATCCGTTTGCTCTGGTCATAAGCA
JMSF043I22+ GAGTACCCAGTATGTGTATAATCACCGCCAGTCCGCATCCGTTTGCTCTGGTCATAAGCA
JMSF028C10+ GAGTACCCAGTATGTGTATAATCACCGCCAGTCCGCATCCGTTTGCTCTGGTCATAAGCA
                      ____________________________________________________________
consensus GAGTACCCAGTATGTGTATAATCACCGCCAGTCCGCATCCGTTTGCTCTGGTCATAAGCA
 
. : . : . : . : . : . :
JMSF047G08+ TTTGAATCAGCAACAATTCCTCTTTTAACAAAAAGGTTCCTTTTGGCCATCTCAGTATGC
JMSF037A20+ TTTGAATCAGCAACAATTCCTCTTTTAACAAAAAGGTTCTTTTTGGCCATCTCAGTATGC
JMSF026P03+ TTTGAATCAGCAACAATTCCTCTTTTAACAAAAAGGTTCTTTTTGGCCATCTCAGTATGC
JMSF043I22+ TTTGAATCAGCAACAATTCCTCTTTTAACAAAAAGGTTCTTTTTGGCCATCTCAGTATGC
JMSF028C10+ TTTGAATCAGCAACAATTCCTCTTTTAACAAAAAGGTTCTTTTTGGCCATCTCAGTATGC
                      ____________________________________________________________
consensus TTTGAATCAGCAACAATTCCTCTTTTAACAAAAAGGTTCTTTTTGGCCATCTCAGTATGC
 
. : . : . : . : . : . :
JMSF047G08+ AGCACAGATTTAGACTCCGCATCAAAAACCATGTCCTGAAGGGCATCCTTGGCAGCAATG
JMSF037A20+ AGCACAGATTTAGACTCCGCATCAAAAACCATGTCCTGAAGGGCATCCTTGGCAGCAATG
JMSF026P03+ AGCACAGATTTAGACTCCGCATCAAAAACCATGTCCTGAAGGGCATCCTTGGCAGCAATG
JMSF043I22+ AGCACAGATTTAGACTCCGCATCAAAAACCATGTCCTGAAGGGCATCCTTGGCAGCAATG
JMSF028C10+ AGCACAGATTTAGACTCCGCATCAAAAACCATGTCCTGAAGGGCATCCTTGGCAGCAATG
                      ____________________________________________________________
consensus AGCACAGATTTAGACTCCGCATCAAAAACCATGTCCTGAAGGGCATCCTTGGCAGCAATG
 
. : . : . : . : . : . :
JMSF047G08+ GCGAACTGAGGAGTGGTAAAAAGAGCAAACCCCATGGGGTGTTCGCCTTTGAAGTTGACC
JMSF037A20+ GCGAACTGAGGAGTGGTAAAAAGAGCAAACCCCATGGGGTGTTCGCCTTTGAAGTTGACC
JMSF026P03+ GCGAACTGAGGAGTGGTAAAAAGAGCAAACCCCATGGGGTGTTCGCCTTTGAAGTTGACC
JMSF043I22+ GCGAACTGAGGAGTGGTAAAAAGAGCAAACCCCATGGGGTGTTCGCCTTTGAAGTTGACC
JMSF028C10+ GCGAACTGAGGAGTGGTAAAAAGAGCAAACCCCATGGGGTGTTCGCCTTTGAAGTTGACC
                      ____________________________________________________________
consensus GCGAACTGAGGAGTGGTAAAAAGAGCAAACCCCATGGGGTGTTCGCCTTTGAAGTTGACC
 
. : . : . : . : . : . :
JMSF047G08+ TGAGATGCTTCGTAACCCGGTAGCCACCTAAGAAGGTTCTGGAGTTCTCTCTCCTTCACG
JMSF037A20+ TGAGATGCTTCGTAACCCGGTAGCCACCTAAGAAGGTTCTGGAGTTCTCTCTCCTTCACG
JMSF026P03+ TGAGATGCTTCGTAACCCGGTAGCCACCTAAGAAGGTTCTGGAGTTCTCTCTCCTTCACG
JMSF043I22+ TGAGATGCTTCGTAACCCGGTAGCCACCTAAGAAGGTTCTGGAGTTCTCTCTCCTTCACG
JMSF028C10+ TGAGATGCTTCGTAACCCGGTAGCCACCTAAGAAGGTTCTGGAGTTCTCTCTCCTTCACG
                      ____________________________________________________________
consensus TGAGATGCTTCGTAACCCGGTAGCCACCTAAGAAGGTTCTGGAGTTCTCTCTCCTTCACG
 
. : . : . : . : . : . :
JMSF047G08+ TCCTCCGGCAGCCCGGAGATGAAAATCGTACGCACCTCGTCGGTAGGGGGACGATTAGGG
JMSF037A20+ TCCTCCGGCAGCCCGGAGATGAAAATCGTACGCACCTCGTCGGTAGGGGGACGATTAGGG
JMSF026P03+ TCCTCCGGCAGCCCGGAGATGAAAATCGTACGCACCTCGTCGGTAGGGGGACGATTAGGG
JMSF043I22+ TCCTCCGGCAGCCCGGAGATGAAAATCGTACGCACCTCGTCGGTAGGGGGACGATTAGGG
JMSF008P20+ GGCAGCCCGGAGATGAAAATCGTACGCACCTCGTCGGTAGGGGGACGATTAGGG
JMSF028C10+ TCCTCCGGCAGCCCGGAGATGAAAATCGTACGCACCTCGTCGGTAGGGGGACGATTAGGG
                      ____________________________________________________________
consensus TCCTCCGGCAGCCCGGAGATGAAAATCGTACGCACCTCGTCGGTAGGGGGACGATTAGGG
 
. : . : . : . : . : . :
JMSF047G08+ TCATTAAGGGGCATTGAAGGAACGTGCGGCGGAGGAGGAGGTGGCGCTGCAGCGGGAGCC
JMSF037A20+ TCATTAAGGGGCATTGAAGGAACGTGCGGCGGAGGAGGAGGTGGCGCTGCAGCGGGAGCC
JMSF026P03+ TCATTAAGGGGCATTGAAGGAACGTGCGGCGGAGGAGGAGGTGGCGCTGCAGCGGGAGCC
JMSF043I22+ TCATTAAGGGGCATTGAAGGAACGTGCGGCGGAGGAGGAGGTGGCGCTGCAGCGGGAGCC
JMSF008P20+ TCATTAAGGGGCATTGAAGGAACGTGCGGCGGAGGAGGAGGTGGCGCTGCAGCGGGAGCC
JMSF028C10+ TCATTAAGGGGCATTGAAGGAACGTGCGGCGGAGGAGGAGGTGGCGCTGCAGCGGGAGCC
                      ____________________________________________________________
consensus TCATTAAGGGGCATTGAAGGAACGTGCGGCGGAGGAGGAGGTGGCGCTGCAGCGGGAGCC
 
. : . : . : . : . : . :
JMSF047G08+ GGAGCTGGAGCCCATTGCTGGTGGTACGGGTGCATTCCGGTGCCGGCCATCTATCGGAAA
JMSF037A20+ GGAGCTGGAGCCCATTGCTGGTGGTACGGGTGCATTCCGGTGCCGGCCATCTATCGGAAA
JMSF026P03+ GGAGCTGGAGCCCATTGCTGGTGGTACGGGTGCATTCCGGTGCCGGCCATCTATCGGAAA
JMSF043I22+ GGAGCTGGAGCCCATTGCTGGTGGTACGGGTGCATTCCGGTGCCGGCCATCTATCGGAAA
JMSF008P20+ GGAGCTGGAGCCCATTGCTGGTGGTACGGGTGCATTCCGGTGCCGGCCATCTATCGGAAA
JMSF028C10+ GGAGCTGGAGCCCATTGCTGGTGGTACGGGTGCATTCCGGTGCCGGCCATCTATCGGAAA
                      ____________________________________________________________
consensus GGAGCTGGAGCCCATTGCTGGTGGTACGGGTGCATTCCGGTGCCGGCCATCTATCGGAAA
 
. : . : . : . : . : . :
JMSF047G08+ TCAACCGATGGATCCGCTTACAGTACAC
JMSF037A20+ TCAACCGATGGATCCGCTTACAGTACACGGCAATAATGGCGCGAGACGACCCGAAGAAAA
JMSF026P03+ TCAACCGATGGATCCGCTTACAGTACACGGCAATAATGGCGCGAGACGACCC
JMSF043I22+ TCAACCGATGGATCCGCTTACAGTACACGGCAATAATGGCGCGAGACGACCCGAAGAAAA
JMSF008P20+ TCAACCGATGGATCCGCTTACAGTACACGGCAATAATGGCGCGAGACGACCCGAAGAAAA
JMSF028C10+ TCAACCGATGGATCCGCTTACAGTACACGGCAATAATGGCGCGAGACGACCCGAAGAAAA
                      ____________________________________________________________
consensus TCAACCGATGGATCCGCTTACAGTACACGGCAATAATGGCGCGAGACGACCCGAAGAAAA
 
. : . : . : . : . : . :
JMSF037A20+ CC
JMSF043I22+ CCCTAGAGAGATTGCGC
JMSF008P20+ CC
JMSF028C10+ CCCTAGAGAGATTGCGCGAATAGAAAGCAGGCAGTTCATGAAATTCTAATATTTGCGTCC
                      ____________________________________________________________
consensus CCCTAGAGAGATTGCGCGAATAGAAAGCAGGCAGTTCATGAAATTCTAATATTTGCGTCC