clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF002N08 | Sequence | 240 | 005130 (10) | emb|CDY37307.1| | 1e-10 | BnaA01g25270D [Brassica napus] | 626 | 005799 (4) | |||
JMSF008P20 | Sequence | 239 | 005130 (10) | ref|XP_010913619.1| | 1e-06 | PREDICTED: RNA-binding protein with multiple splicing-like [Elaeis guineensis] | 534 | 005799 (4) | |||
JMSF026P03 | Sequence | 680 | 005130 (10) | emb|CBI25280.3| | 2e-79 | unnamed protein product [Vitis vinifera] | 739 | 005130 (10) | gb|KJB69149.1| | 9e-50 | hypothetical protein B456_011G008300 [Gossypium raimondii] |
JMSF028C10 | Sequence | 672 | 005130 (10) | emb|CBI25280.3| | 2e-79 | unnamed protein product [Vitis vinifera] | 534 | 005799 (4) | |||
JMSF037A20 | Sequence | 712 | 005130 (10) | emb|CBI25280.3| | 3e-79 | unnamed protein product [Vitis vinifera] | 707 | 005130 (10) | ref|XP_009781707.1| | 6e-54 | PREDICTED: cell wall integrity protein scw1-like, partial [Nicotiana sylvestris |
JMSF043I22 | Sequence | 728 | 005130 (10) | emb|CBI25280.3| | 4e-79 | unnamed protein product [Vitis vinifera] | 606 | 005799 (4) | |||
JMSF047G08 | Sequence | 680 | 005130 (10) | emb|CBI25280.3| | 6e-79 | unnamed protein product [Vitis vinifera] | 778 | 005130 (10) | gb|KJB69151.1| | 7e-50 | hypothetical protein B456_011G008300 [Gossypium raimondii] |
This contig is upended
. : . : . : . : . : . :
rJMSF026P03- AT
____________________________________________________________
consensus AT
. : . : . : . : . : . :
rJMSF026P03- GGACAATAAAAATGGTATGAAAGACATCAATACATCTAAGAAAGGAAGCATTCATGACAT
rJMSF037A20- GACAT
rJMSF047G08- GACAT
____________________________________________________________
consensus GGACAATAAAAATGGTATGAAAGACATCAATACATCTAAGAAAGGAAGCATTCATGACAT
. : . : . : . : . : . :
rJMSF026P03- CTTAGGTAAATATGGCATAGTGCAAAGTCAAATCACATAATTTCTACACTAAAAATTACA
rJMSF037A20- CTTAGGTAAATATGGCATAGTGCAAAGTCAAATCACATAATTTCTACACTAAAAATTACA
rJMSF047G08- CTTAGGTAAATATGGCATAGTGCAAAGTCAAATCACATAATTTCTACACTAAAAATTACA
____________________________________________________________
consensus CTTAGGTAAATATGGCATAGTGCAAAGTCAAATCACATAATTTCTACACTAAAAATTACA
. : . : . : . : . : . :
rJMSF026P03- TGCATCCTTAATATAATATGTTGCAAAAACATGAACCAATGAAGTTAGCTTTTCTTGCCA
rJMSF037A20- TGCATCCTTAATATAATATGTTGCAAAAACATGAACCAATGAAGTTAGCTTTTCTTGCCA
rJMSF047G08- TGCATCCTTAATATAATATGTTGCAAAAACATGAACCAATGAAGTTAGCTTTTCTTGCCA
____________________________________________________________
consensus TGCATCCTTAATATAATATGTTGCAAAAACATGAACCAATGAAGTTAGCTTTTCTTGCCA
. : . : . : . : . : . :
rJMSF026P03- TGCCACTGCTTCAAATGCATGCCCTGGGTAAACTATAAGATGGTCCAAGAATATGTTCAT
rJMSF037A20- TGCCACTGCTTCAAATGCATGCCCTGGGTAAACTATAAGATGGTCCAAGAATATGTTCAT
rJMSF047G08- TGCCACTGCTTCAAATGCATGCCCTGGGTAAACTATAAGATGGTCCAAGAATATGTTCAT
____________________________________________________________
consensus TGCCACTGCTTCAAATGCATGCCCTGGGTAAACTATAAGATGGTCCAAGAATATGTTCAT
. : . : . : . : . : . :
rJMSF026P03- GATGCAACAGTTTGCATTCATTCACATGAGAAGAGATGCTAATGCTGATGACTTGATGAT
rJMSF037A20- GATGCAACAGTTTGCATTCATTCACATGAGAAGAGATGCTAATGCTGATGACTTGATGAT
rJMSF047G08- GATGCAACAGTTTGCATTCATTCACATGAGAAGAGATGCTAATGCTGATGACTTGATGAT
____________________________________________________________
consensus GATGCAACAGTTTGCATTCATTCACATGAGAAGAGATGCTAATGCTGATGACTTGATGAT
. : . : . : . : . : . :
rJMSF026P03- TACATGGATGCATGCAACAGCTGTCCATGATGCATCCTATCATGTAAGGATTTGTATTTG
rJMSF037A20- TACATGGATGCATGCAACAGCTGTCCATGATGCATCCTATCATGTAAGGATTTGTATTTG
rJMSF047G08- TACATGGATGCATGCAACAGCTGTCCATGATGCATCCTATCATGTAAGGATTTGTATTTG
____________________________________________________________
consensus TACATGGATGCATGCAACAGCTGTCCATGATGCATCCTATCATGTAAGGATTTGTATTTG
. : . : . : . : . : . :
rJMSF026P03- TCAGAGCATAGAGAACAGAATACATCCCCTTCCAGCTACTGGTAGGTCATAGGTGGTGGA
rJMSF037A20- TCAGAGCATAGAGAACAGAATACATCCCCTTCCAGCTACTGGTAGGTCATAGGTGGTGGA
rJMSF047G08- TCAGAGCATAGAGAACAGAATACATCCCCTTCCAGCTACTGGTAGGTCATAGGTGGTGGA
____________________________________________________________
consensus TCAGAGCATAGAGAACAGAATACATCCCCTTCCAGCTACTGGTAGGTCATAGGTGGTGGA
. : . : . : . : . : . :
rJMSF026P03- GCTCCATTTGCAGCAGGGGAAATGTGATTGAAATCCTTCCTTTTTCCAAATGGATTCTTT
rJMSF037A20- GCTCCATTTGCAGCAGGGGAAATGTGATTGAAATCCTTCCTTTTTCCAAATGGATTCTTT
rJMSF047G08- GCTCCATTTGCAGCAGGGGAAATGTGATTGAAATCCTTCCTTTTTCCAAATGGATTCTTT
____________________________________________________________
consensus GCTCCATTTGCAGCAGGGGAAATGTGATTGAAATCCTTCCTTTTTCCAAATGGATTCTTT
. : . : . : . : . : . :
rJMSF026P03- GAATATTGAATCCGCATGCCAACAGCACCAGAACTAGGTATAACAGCACCCTGCAAGGTA
JMSF002N08+ ATATTGAATCCGCATGCCAACAGCACCAGAACTAGGTATAACAGCACCCTGCAAGGTA
rJMSF037A20- GAATATTGAATCCGCATGCCAACAGCACCAGAACTAGGTATAACAGCACCCTGCAAGGTA
rJMSF047G08- GAATATTGAATCCGCATGCCAACAGCACCAGAACTAGGTATAACAGCACCCTGCAAGGTA
____________________________________________________________
consensus GAATATTGAATCCGCATGCCAACAGCACCAGAACTAGGTATAACAGCACCCTGCAAGGTA
. : . : . : . : . : . :
rJMSF026P03- TGGTGCACATTGGTGGCACTCTGCACATCTTCAAACTCAATGAAACATACAGTATGCCTT
JMSF002N08+ TGGTGCACATTGGTGGCACTCTGCACATCTTC
rJMSF037A20- TGGTGCACATTGGTGGCACTCTGCACATCTTCAAACTCAATGAAACATACAGTATGCCTT
rJMSF047G08- TGGTGCACATTGGTGGCACTCTGCACATCTTCAAACTCAATGAAACATACAGTATGCCTT
____________________________________________________________
consensus TGGTGCACATTGGTGGCACTCTGCACATCTTCAAACTCAATGAAACATACAGTATGCCTT
. : . : . : . : . : . :
rJMSF026P03- TCCTGTCTCAATACCTTCATCTGCTTATAACCAGGTTGCACAGTGAACAGGCCCCTCAAC
rJMSF037A20- TCCTGTCTCAATACCTTCATCTGCTTATAACCAGGTTGCACAGTGAACAGGCCCCTCAAC
rJMSF047G08- TCCTGTCTCAATACCTTCATCTGCTTATAACCAGGTTGCACAGTGAACAGGCCCCTCAAC
____________________________________________________________
consensus TCCTGTCTCAATACCTTCATCTGCTTATAACCAGGTTGCACAGTGAACAGGCCCCTCAAC
. : . : . : . : . : . :
rJMSF026P03- TCTTCCTCATTTATGTTCTCTCCAAGATTGCCAATGAAAAGGGTATTGCAAGGAGGATTA
rJMSF037A20- TCTTCCTCATTTATGTTCTCTCCNAGATTGCCAATGAAAAGGGTATTGCAAGGAGGATTA
rJMSF047G08- TCTTCCTCATTTATGTTCTCTCCAAGATTGCCAATGAAAAGGGTATTGCAAGGAGGATTA
____________________________________________________________
consensus TCTTCCTCATTTATGTTCTCTCCAAGATTGCCAATGAAAAGGGTATTGCAAGGAGGATTA
. : . : . : . : . : . :
rJMSF026P03- TCTTTTGTATTCTGGAC
rJMSF037A20- TCTTTTGTATNCTGGACAGGCACATAGCTGCTTGGTGCTGCA
rJMSF047G08- TCTTTTGTATTCTGGACAGGCACATAGCTGCTTGGTGCTGCAGGCATAGGAGCAGGAACA
JMSF047G08+ GGACAGGCACATAGCTGCTTGGTGCTGCAGGCATAGGAGCAGGAACA
JMSF037A20+ GGACAGGCACATAGCTGCTTGGTGCTGCAGGCATAGGAGCAGGAACA
JMSF026P03+ GGTGCTGCAGGCATAGGAGCAGGAACA
JMSF043I22+ GGACAGGCACATAGCTGCTTGGTGCTGCAGGCATAGGAGCAGGAACA
____________________________________________________________
consensus TCTTTTGTATTCTGGACAGGCACATAGCTGCTTGGTGCTGCAGGCATAGGAGCAGGAACA
. : . : . : . : . : . :
rJMSF047G08- GGCATTGGCACAGGAGGAACATGGTAACCAGTATATGGATCATATGGTTGA
JMSF047G08+ GGCATTGGCACAGGAGGAACATGGTAACCAGTATATGGATCATATGGTTGAGGTGGTGGA
JMSF037A20+ GGCATTGGCACAGGAGGAACATGGTAACCAGTATATGGATCATATGGTTGAGGTGGTGGA
JMSF026P03+ GGCATTGGCACAGGAGGAACATGGTAACCAGTATATGGATCATATGGTTGAGGTGGTGGA
JMSF043I22+ GGCATTGGCACAGGAGGAACATGGTAACCAGTATATGGATCATATGGTTGAGGTGGTGGA
____________________________________________________________
consensus GGCATTGGCACAGGAGGAACATGGTAACCAGTATATGGATCATATGGTTGAGGTGGTGGA
. : . : . : . : . : . :
JMSF047G08+ GTCATGTACGCAGGTGGCCCCCAAGCTGGTGCAGGAGGGGGGTGAAAAGGAGAGGGGCTA
JMSF037A20+ GTCATGTACGCAGGTGGCCCCCAAGCTGGTGCAGGAGGGGGGTGAAAAGGAGAGGGGCTA
JMSF026P03+ GTCATGTACGCAGGTGGCCCCCAAGCTGGTGCAGGAGGGGGGTGAAAAGGAGAGGGGCTA
JMSF043I22+ GTCATGTACGCAGGTGGCCCCCAAGCTGGTGCAGGAGGGGGGTGAAAAGGAGAGGGGCTA
JMSF028C10+ TACGCAGGTGGCCCCCAAGCTGGTGCAGGAGGGGGGTGAAAAGGAGAGGGGCTA
____________________________________________________________
consensus GTCATGTACGCAGGTGGCCCCCAAGCTGGTGCAGGAGGGGGGTGAAAAGGAGAGGGGCTA
. : . : . : . : . : . :
JMSF047G08+ GAGTACCCAGTATGTGTATAATCACCGCCAGTCCGCATCCGTTTGCTCTGGTCATAAGCA
JMSF037A20+ GAGTACCCAGTATGTGTATAATCACCGCCAGTCCGCATCCGTTTGCTCTGGTCATAAGCA
JMSF026P03+ GAGTACCCAGTATGTGTATAATCACCGCCAGTCCGCATCCGTTTGCTCTGGTCATAAGCA
JMSF043I22+ GAGTACCCAGTATGTGTATAATCACCGCCAGTCCGCATCCGTTTGCTCTGGTCATAAGCA
JMSF028C10+ GAGTACCCAGTATGTGTATAATCACCGCCAGTCCGCATCCGTTTGCTCTGGTCATAAGCA
____________________________________________________________
consensus GAGTACCCAGTATGTGTATAATCACCGCCAGTCCGCATCCGTTTGCTCTGGTCATAAGCA
. : . : . : . : . : . :
JMSF047G08+ TTTGAATCAGCAACAATTCCTCTTTTAACAAAAAGGTTCCTTTTGGCCATCTCAGTATGC
JMSF037A20+ TTTGAATCAGCAACAATTCCTCTTTTAACAAAAAGGTTCTTTTTGGCCATCTCAGTATGC
JMSF026P03+ TTTGAATCAGCAACAATTCCTCTTTTAACAAAAAGGTTCTTTTTGGCCATCTCAGTATGC
JMSF043I22+ TTTGAATCAGCAACAATTCCTCTTTTAACAAAAAGGTTCTTTTTGGCCATCTCAGTATGC
JMSF028C10+ TTTGAATCAGCAACAATTCCTCTTTTAACAAAAAGGTTCTTTTTGGCCATCTCAGTATGC
____________________________________________________________
consensus TTTGAATCAGCAACAATTCCTCTTTTAACAAAAAGGTTCTTTTTGGCCATCTCAGTATGC
. : . : . : . : . : . :
JMSF047G08+ AGCACAGATTTAGACTCCGCATCAAAAACCATGTCCTGAAGGGCATCCTTGGCAGCAATG
JMSF037A20+ AGCACAGATTTAGACTCCGCATCAAAAACCATGTCCTGAAGGGCATCCTTGGCAGCAATG
JMSF026P03+ AGCACAGATTTAGACTCCGCATCAAAAACCATGTCCTGAAGGGCATCCTTGGCAGCAATG
JMSF043I22+ AGCACAGATTTAGACTCCGCATCAAAAACCATGTCCTGAAGGGCATCCTTGGCAGCAATG
JMSF028C10+ AGCACAGATTTAGACTCCGCATCAAAAACCATGTCCTGAAGGGCATCCTTGGCAGCAATG
____________________________________________________________
consensus AGCACAGATTTAGACTCCGCATCAAAAACCATGTCCTGAAGGGCATCCTTGGCAGCAATG
. : . : . : . : . : . :
JMSF047G08+ GCGAACTGAGGAGTGGTAAAAAGAGCAAACCCCATGGGGTGTTCGCCTTTGAAGTTGACC
JMSF037A20+ GCGAACTGAGGAGTGGTAAAAAGAGCAAACCCCATGGGGTGTTCGCCTTTGAAGTTGACC
JMSF026P03+ GCGAACTGAGGAGTGGTAAAAAGAGCAAACCCCATGGGGTGTTCGCCTTTGAAGTTGACC
JMSF043I22+ GCGAACTGAGGAGTGGTAAAAAGAGCAAACCCCATGGGGTGTTCGCCTTTGAAGTTGACC
JMSF028C10+ GCGAACTGAGGAGTGGTAAAAAGAGCAAACCCCATGGGGTGTTCGCCTTTGAAGTTGACC
____________________________________________________________
consensus GCGAACTGAGGAGTGGTAAAAAGAGCAAACCCCATGGGGTGTTCGCCTTTGAAGTTGACC
. : . : . : . : . : . :
JMSF047G08+ TGAGATGCTTCGTAACCCGGTAGCCACCTAAGAAGGTTCTGGAGTTCTCTCTCCTTCACG
JMSF037A20+ TGAGATGCTTCGTAACCCGGTAGCCACCTAAGAAGGTTCTGGAGTTCTCTCTCCTTCACG
JMSF026P03+ TGAGATGCTTCGTAACCCGGTAGCCACCTAAGAAGGTTCTGGAGTTCTCTCTCCTTCACG
JMSF043I22+ TGAGATGCTTCGTAACCCGGTAGCCACCTAAGAAGGTTCTGGAGTTCTCTCTCCTTCACG
JMSF028C10+ TGAGATGCTTCGTAACCCGGTAGCCACCTAAGAAGGTTCTGGAGTTCTCTCTCCTTCACG
____________________________________________________________
consensus TGAGATGCTTCGTAACCCGGTAGCCACCTAAGAAGGTTCTGGAGTTCTCTCTCCTTCACG
. : . : . : . : . : . :
JMSF047G08+ TCCTCCGGCAGCCCGGAGATGAAAATCGTACGCACCTCGTCGGTAGGGGGACGATTAGGG
JMSF037A20+ TCCTCCGGCAGCCCGGAGATGAAAATCGTACGCACCTCGTCGGTAGGGGGACGATTAGGG
JMSF026P03+ TCCTCCGGCAGCCCGGAGATGAAAATCGTACGCACCTCGTCGGTAGGGGGACGATTAGGG
JMSF043I22+ TCCTCCGGCAGCCCGGAGATGAAAATCGTACGCACCTCGTCGGTAGGGGGACGATTAGGG
JMSF008P20+ GGCAGCCCGGAGATGAAAATCGTACGCACCTCGTCGGTAGGGGGACGATTAGGG
JMSF028C10+ TCCTCCGGCAGCCCGGAGATGAAAATCGTACGCACCTCGTCGGTAGGGGGACGATTAGGG
____________________________________________________________
consensus TCCTCCGGCAGCCCGGAGATGAAAATCGTACGCACCTCGTCGGTAGGGGGACGATTAGGG
. : . : . : . : . : . :
JMSF047G08+ TCATTAAGGGGCATTGAAGGAACGTGCGGCGGAGGAGGAGGTGGCGCTGCAGCGGGAGCC
JMSF037A20+ TCATTAAGGGGCATTGAAGGAACGTGCGGCGGAGGAGGAGGTGGCGCTGCAGCGGGAGCC
JMSF026P03+ TCATTAAGGGGCATTGAAGGAACGTGCGGCGGAGGAGGAGGTGGCGCTGCAGCGGGAGCC
JMSF043I22+ TCATTAAGGGGCATTGAAGGAACGTGCGGCGGAGGAGGAGGTGGCGCTGCAGCGGGAGCC
JMSF008P20+ TCATTAAGGGGCATTGAAGGAACGTGCGGCGGAGGAGGAGGTGGCGCTGCAGCGGGAGCC
JMSF028C10+ TCATTAAGGGGCATTGAAGGAACGTGCGGCGGAGGAGGAGGTGGCGCTGCAGCGGGAGCC
____________________________________________________________
consensus TCATTAAGGGGCATTGAAGGAACGTGCGGCGGAGGAGGAGGTGGCGCTGCAGCGGGAGCC
. : . : . : . : . : . :
JMSF047G08+ GGAGCTGGAGCCCATTGCTGGTGGTACGGGTGCATTCCGGTGCCGGCCATCTATCGGAAA
JMSF037A20+ GGAGCTGGAGCCCATTGCTGGTGGTACGGGTGCATTCCGGTGCCGGCCATCTATCGGAAA
JMSF026P03+ GGAGCTGGAGCCCATTGCTGGTGGTACGGGTGCATTCCGGTGCCGGCCATCTATCGGAAA
JMSF043I22+ GGAGCTGGAGCCCATTGCTGGTGGTACGGGTGCATTCCGGTGCCGGCCATCTATCGGAAA
JMSF008P20+ GGAGCTGGAGCCCATTGCTGGTGGTACGGGTGCATTCCGGTGCCGGCCATCTATCGGAAA
JMSF028C10+ GGAGCTGGAGCCCATTGCTGGTGGTACGGGTGCATTCCGGTGCCGGCCATCTATCGGAAA
____________________________________________________________
consensus GGAGCTGGAGCCCATTGCTGGTGGTACGGGTGCATTCCGGTGCCGGCCATCTATCGGAAA
. : . : . : . : . : . :
JMSF047G08+ TCAACCGATGGATCCGCTTACAGTACAC
JMSF037A20+ TCAACCGATGGATCCGCTTACAGTACACGGCAATAATGGCGCGAGACGACCCGAAGAAAA
JMSF026P03+ TCAACCGATGGATCCGCTTACAGTACACGGCAATAATGGCGCGAGACGACCC
JMSF043I22+ TCAACCGATGGATCCGCTTACAGTACACGGCAATAATGGCGCGAGACGACCCGAAGAAAA
JMSF008P20+ TCAACCGATGGATCCGCTTACAGTACACGGCAATAATGGCGCGAGACGACCCGAAGAAAA
JMSF028C10+ TCAACCGATGGATCCGCTTACAGTACACGGCAATAATGGCGCGAGACGACCCGAAGAAAA
____________________________________________________________
consensus TCAACCGATGGATCCGCTTACAGTACACGGCAATAATGGCGCGAGACGACCCGAAGAAAA
. : . : . : . : . : . :
JMSF037A20+ CC
JMSF043I22+ CCCTAGAGAGATTGCGC
JMSF008P20+ CC
JMSF028C10+ CCCTAGAGAGATTGCGCGAATAGAAAGCAGGCAGTTCATGAAATTCTAATATTTGCGTCC
____________________________________________________________
consensus CCCTAGAGAGATTGCGCGAATAGAAAGCAGGCAGTTCATGAAATTCTAATATTTGCGTCC