| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF014M04 | Sequence | 543 | 005128 (8) | gb|EGC95194.1| | 9e-41 | DNA-binding transcriptional repressor MarR [Escherichia fergusonii ECD227] | |||||
| JMSF025G05 | Sequence | 179 | 005128 (8) | ref|WP_032234272.1| | 2e-25 | transcriptional regulator, partial [Escherichia coli] | 590 | 005690 (2) | ref|XP_008457747.1| | 3e-09 | PREDICTED: filament-like plant protein 7 [Cucumis melo] ref|XP_008457748.1| PRED |
| JMSF027N03 | Sequence | 666 | 005128 (8) | ref|WP_032229095.1| | 5e-49 | hypothetical protein, partial [Escherichia coli] gb|KEM45847.1| marC integral me | 623 | 007131 (2) | ref|XP_009801679.1| | 9e-63 | PREDICTED: uncharacterized protein LOC104247378 isoform X3 [Nicotiana sylvestri |
| JMSF036O12 | Sequence | 671 | 005128 (8) | ref|WP_032229095.1| | 2e-50 | hypothetical protein, partial [Escherichia coli] gb|KEM45847.1| marC integral me | |||||
| JMSF041C13 | Sequence | 713 | 005128 (8) | ref|WP_032229095.1| | 6e-62 | hypothetical protein, partial [Escherichia coli] gb|KEM45847.1| marC integral me | |||||
| JMSF045M09 | Sequence | 706 | 005128 (8) | ref|WP_042016018.1| | 3e-59 | hypothetical protein, partial [Escherichia coli] | |||||
| JMSF048E08 | Sequence | 230 | 005128 (8) | ref|WP_001474279.1| | 3e-26 | marC integral membrane family protein [Escherichia coli] gb|ENC40766.1| marC int | 477 | 012757 (2) | |||
| JMSF052N22 | Sequence | 304 | 005128 (8) | gb|EGC95194.1| | 1e-18 | DNA-binding transcriptional repressor MarR [Escherichia fergusonii ECD227] | |||||
This contig is upended
. : . : . : . : . : . :
JMSF045M09+ TCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACG
JMSF041C13+ CGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACG
JMSF036O12+ TAAACG
JMSF027N03+ TAAACG
____________________________________________________________
consensus CGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACG
. : . : . : . : . : . :
JMSF045M09+ CGACGATTAAGCCGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCA
JMSF041C13+ CGACGATTAAGCCGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCA
JMSF036O12+ CGACGATTAAGCCGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCA
JMSF048E08+ ACCGGGAATCGAAATGCCAAATGTATCCATCA
JMSF027N03+ CGACGATTAAGCCGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCA
____________________________________________________________
consensus CGACGATTAAGCCGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCA
. : . : . : . : . : . :
JMSF045M09+ CCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCA
JMSF041C13+ CCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCA
JMSF036O12+ CCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCA
JMSF014M04+ TCA
JMSF048E08+ CCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCA
JMSF027N03+ CCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCA
____________________________________________________________
consensus CCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTACACCGAGGCCATCA
. : . : . : . : . : . :
JMSF045M09+ ACGACTGACGATTACGTTCGGCACTGTTCATGTTGCCTGCCAGGCCAAGAAATAACGCGA
JMSF041C13+ ACGACTGACGATTACGTTCGGCACTGTTCATGTTGCCTGCCAGGCCAAGAAATAACGCGA
JMSF036O12+ ACGACTGACGATTACGTTCGGCACTGTTCATGTTGCCTGCCAGGCCAAGAAATAACGCGA
JMSF014M04+ ACGACTGACGATTACGTTCGGCACTGTTCATGTTGCCTGCCAGGCCAAGAAATAACGCGA
JMSF048E08+ ACGACTGACGATTACGTTCGGCACTGTTCATGTTGCCTGCCAGGCCAAGAAATAACGCGA
JMSF027N03+ ACGACTGACGATTACGTTCGGCACTGTTCATGTTGCCTGCCAGGCCAAGAAATAACGCGA
____________________________________________________________
consensus ACGACTGACGATTACGTTCGGCACTGTTCATGTTGCCTGCCAGGCCAAGAAATAACGCGA
. : . : . : . : . : . :
JMSF045M09+ CAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAA
JMSF041C13+ CAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAA
JMSF036O12+ CAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAA
JMSF014M04+ CAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAA
JMSF048E08+ CAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAANTGCTTTAA
JMSF027N03+ CAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAA
____________________________________________________________
consensus CAGTTGTTAATGGGTTAGCTAACGGCAGCAACACCACCAGCCCCAGGCCAATTGCTTTAA
. : . : . : . : . : . :
JMSF045M09+ ACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAG
JMSF041C13+ ACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAG
JMSF036O12+ ACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAG
JMSF014M04+ ACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAG
JMSF052N22+ CTGGGTTATCAGCGAAAAGTATAAG
JMSF048E08+ ACAAATCTAACATTGGTG
JMSF027N03+ ACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAG
____________________________________________________________
consensus ACAAATCTAACATTGGTGGTTGTTATCCTGTGTATCTGGGTTATCAGCGAAAAGTATAAG
. : . : . : . : . : . :
JMSF045M09+ GGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTT
JMSF041C13+ GGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTT
JMSF036O12+ GGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTT
JMSF014M04+ GGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTT
JMSF052N22+ GGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTT
JMSF027N03+ GGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTT
____________________________________________________________
consensus GGGTAAACAAGGATAAAGTGTCACTCTTTAGCTAGCCTTGCATCGCATTGAACAAAACTT
. : . : . : . : . : . :
JMSF045M09+ GAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGG
JMSF041C13+ GAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGG
JMSF036O12+ GAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGG
JMSF014M04+ GAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGG
JMSF052N22+ GAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGG
JMSF027N03+ GAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGG
____________________________________________________________
consensus GAACCGATTTAGCAAAACGTGGCATCGGTCAATTCATTCATTTGACTTATACTTGCCTGG
. : . : . : . : . : . :
JMSF045M09+ GCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCG
JMSF041C13+ GCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCG
JMSF036O12+ GCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCG
JMSF014M04+ GCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCG
JMSF052N22+ GCAATATTATCCCCTGCAANTAATTACTTGCCAGGGCAANTAATGTGAAAAGTACCAGCG
JMSF025G05+ GCCAGGGCAACTAATGTGAAAAGTACCAGCG
JMSF027N03+ GCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCG
____________________________________________________________
consensus GCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCG
. : . : . : . : . : . :
JMSF045M09+ ATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAG
JMSF041C13+ ATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAG
JMSF036O12+ ATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAG
JMSF014M04+ ATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAG
JMSF052N22+ ATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTANTCAGANGAAAG
JMSF025G05+ ATCTGTNCAATGAAATTATTCCATTGGGTCGCTTNATCCATATGGTTAATCAGAAGAAAG
JMSF027N03+ ATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAG
____________________________________________________________
consensus ATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAG
. : . : . : . : . : . :
JMSF045M09+ ATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGC
JMSF041C13+ ATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGC
JMSF036O12+ ATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGC
JMSF014M04+ ATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGC
JMSF052N22+ ATCGCCTGCTTAACGNGTATCTGTCTCCGCTGGATATTA
JMSF025G05+ ATCGCCTNNTTAACGAGTATCTNTNTCCGCNGGATATTACCGCGGCNCAGTTTAAGGTGC
JMSF027N03+ ATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGC
____________________________________________________________
consensus ATCGCCTGCTTAACGAGTATCTGTCTCCGCTGGATATTACCGCGGCACAGTTTAAGGTGC
. : . : . : . : . : . :
JMSF045M09+ TCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGG
JMSF041C13+ TCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGG
JMSF036O12+ TCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGG
JMSF014M04+ TCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGG
JMSF025G05+ TNTGCTCTATCCGNTGCGCGGCGTG
JMSF027N03+ TCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGG
____________________________________________________________
consensus TCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGG