Contig 005117:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF027C02Sequence686005117 (4)ref|XP_010086907.1|3e-95AP-4 complex subunit sigma [Morus notabilis] gb|EXB24698.1| AP-4 complex subunit712005117 (4)ref|XP_010086907.1|4e-95AP-4 complex subunit sigma [Morus notabilis] gb|EXB24698.1| AP-4 complex subunit
JMSF038K11Sequence678005117 (4)ref|XP_010086907.1|2e-95AP-4 complex subunit sigma [Morus notabilis] gb|EXB24698.1| AP-4 complex subunit668005117 (4)ref|XP_010086907.1|2e-95AP-4 complex subunit sigma [Morus notabilis] gb|EXB24698.1| AP-4 complex subunit

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF038K11- AAAGTGAAATTAACT
JMSF038K11+ AATACAAAACTCCAAAAGTGAAATTAACT
rJMSF027C02- TAACT
                      ____________________________________________________________
consensus AATACAAAACTCCAAAAGTGAAATTAACT
 
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rJMSF038K11- CGTAACTGGCAATGGAGAATGACCAATTTATGTCCTGCAATATCAACACCTATTTTGCCT
JMSF038K11+ CGTAACTGGCAATGGAGAATGACCAATTTATGTCCTGCAATATCAACACCTATTTTGCCT
rJMSF027C02- CGTAACTGGCAATGGAGAATGACCAATTTATGTCCTGCAATATCAACACCTATTTTGCCT
                      ____________________________________________________________
consensus CGTAACTGGCAATGGAGAATGACCAATTTATGTCCTGCAATATCAACACCTATTTTGCCT
 
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rJMSF038K11- TCAAAATGTAATGTAATATAACAAACTCAATAGAAGCTGAGAGTTACTAAGCCAATGCAA
JMSF038K11+ TCAAAATGTAATGTAATATAACAAACTCAATAGAAGCTGAGAGTTACTAAGCCAATGCAA
rJMSF027C02- TCAAAATGTAATGTAATATAACAAACTCAATAGAAGCTGAGAGTTACTAAGCCAATGCAA
JMSF027C02+ AGCTGAGAGTTANTAAGCCAATGCAA
                      ____________________________________________________________
consensus TCAAAATGTAATGTAATATAACAAACTCAATAGAAGCTGAGAGTTACTAAGCCAATGCAA
 
. : . : . : . : . : . :
rJMSF038K11- AGTAGACACACAAACAATGATCAAGCTTATGATGCTTTGTCCACTAGCTGTATGGGAGAC
JMSF038K11+ AGTAGACACACAAACAATGATCAAGCTTATGATGCTTTGTCCACTAGCTGTATGGGAGAC
rJMSF027C02- AGTAGACACACAAACAATGATCAAGCTTATGATGCTTTGTCCACTAGCTGTATGGGAGAC
JMSF027C02+ AGTAGACACACAAACAATGATCAAGCTTATGATGCTTTGTCCACTAGCTGTATGGGAGAC
                      ____________________________________________________________
consensus AGTAGACACACAAACAATGATCAAGCTTATGATGCTTTGTCCACTAGCTGTATGGGAGAC
 
. : . : . : . : . : . :
rJMSF038K11- AAAATGTTGGACTTGCTCGTCTCAACAATACACCCGTTCATCACCATCTCCTCCAGCATG
JMSF038K11+ AAAATGTTGGACTTGCTCGTCTCAACAATACACCCGTTCATCACCATCTCCTCCAGCATG
rJMSF027C02- AAAATGTTGGACTTGCTCGTCTCAACAATACACCCGTTCATCACCATCTCCTCCAGCATG
JMSF027C02+ AAAATGTTGGACTTGCTCGTCTCAACAATACACCCGTTCATCACCATCTCCTCCAGCATG
                      ____________________________________________________________
consensus AAAATGTTGGACTTGCTCGTCTCAACAATACACCCGTTCATCACCATCTCCTCCAGCATG
 
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rJMSF038K11- AAGTGCGCTTTCTCCAGATGAAACATGATATCCAACTCGCACACGTTGCCAAAATGACGA
JMSF038K11+ AAGTGCGCTTTCTCCAGATGAAACATGATATCCAACTCGCACACGTTGCCAAAATGACGA
rJMSF027C02- AAGTGCGCTTTCTCCAGATGAAACATGATATCCAACTCGCACACGTTGCCAAAATGACGA
JMSF027C02+ AAGTGCGCTTTCTCCAGATGAAACATGATATCCAACTCGCACACGTTGCCAAAATGACGA
                      ____________________________________________________________
consensus AAGTGCGCTTTCTCCAGATGAAACATGATATCCAACTCGCACACGTTGCCAAAATGACGA
 
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rJMSF038K11- TCCATTGTTTCAACTAGCAGGTGAATGAATTCCAAAATTGCAAGCTCATTTTCTTCATTG
JMSF038K11+ TCCATTGTTTCAACTAGCAGGTGAATGAATTCCAAAATTGCAAGCTCATTTTCTTCATTG
rJMSF027C02- TCCATTGTTTCAACTAGCAGGTGAATGAATTCCAAAATTGCAAGCTCATTTTCTTCATTG
JMSF027C02+ TCCATTGTTTCAACTAGCAGGTGAATGAATTCCAAAATTGCAAGCTCATTTTCTTCATTG
                      ____________________________________________________________
consensus TCCATTGTTTCAACTAGCAGGTGAATGAATTCCAAAATTGCAAGCTCATTTTCTTCATTG
 
. : . : . : . : . : . :
rJMSF038K11- TCAACTCCAACCATGAAAAATAGTGACGCATATCGCCTGTAGACTATTTTGTAGTTACGA
JMSF038K11+ TCAACTCCAACCATGAAAAATAGTGACGCATATCGCCTGTAGACTATTTTGTAGTTACGA
rJMSF027C02- TCAACTCCAACCATGAAAAATAGTGACGCATATCGCCTGTAGACTATTTTGTAGTTACGA
JMSF027C02+ TCAACTCCAACCATGAAAAATAGTGACGCATATCGCCTGTAGACTATTTTGTAGTTACGA
                      ____________________________________________________________
consensus TCAACTCCAACCATGAAAAATAGTGACGCATATCGCCTGTAGACTATTTTGTAGTTACGA
 
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rJMSF038K11- TGCTCCACGAATGAACACTGTTGCTCATTCCGCGCGAGACACTTGCGAACGATTTCGCCC
JMSF038K11+ TGCTCCACGAATGAACACTGTTGCTCATTCCGCGCGAGACACTTGCGAACGATTTCGCCC
rJMSF027C02- TGCTCCACGAATGAACACTGTTGCTCATTCCGCGCGAGACACTTGCGAACGATTTCGCCC
JMSF027C02+ TGCTCCACGAATGAACACTGTTGCTCATTCCGCGCGAGACACTTGCGAACGATTTCGCCC
                      ____________________________________________________________
consensus TGCTCCACGAATGAACACTGTTGCTCATTCCGCGCGAGACACTTGCGAACGATTTCGCCC
 
. : . : . : . : . : . :
rJMSF038K11- TCAAGCGCACGCCTTTCTTCGATGGTGAGGTACTCGTAGTACTGGGCTAGCCGAGTCTGC
JMSF038K11+ TCAAGCGCACGCCTTTCTTCGATGGTGAGGTACTCGTAGTACTGGGCTAGCCGAGTCTGC
rJMSF027C02- TCAAGCGCACGCCTTTCTTCGATGGTGAGGTACTCGTAGTACTGGGCTAGCCGAGTCTGC
JMSF027C02+ TCAAGCGCACGCCTTTCTTCGATGGTGAGGTACTCGTAGTACTGGGCTAGCCGAGTCTGC
                      ____________________________________________________________
consensus TCAAGCGCACGCCTTTCTTCGATGGTGAGGTACTCGTAGTACTGGGCTAGCCGAGTCTGC
 
. : . : . : . : . : . :
rJMSF038K11- CCTTGCTTGTTCACCATTAGTATGAATCTGATCCCCATCTCCTTCTTCCTTCCTTTCTCT
JMSF038K11+ CCTTGCTTGTTCACCATTAGTATGAATCTGATCCCCATCTCCTTCTTCCTTCCTTTCTCT
rJMSF027C02- CCTTGCTTGTTCACCATTAGTATGAATCTGATCCCCATCTCCTTCTTCCTTCCTTTCTCT
JMSF027C02+ CCTTGCTTGTTCACCATTAGTATGAATCTGATCCCCATCTCCTTCTTCCTTCCTTTCTCT
                      ____________________________________________________________
consensus CCTTGCTTGTTCACCATTAGTATGAATCTGATCCCCATCTCCTTCTTCCTTCCTTTCTCT
 
. : . : . : . : . : . :
rJMSF038K11- CAACGCGATCTCCCCGATTCACCACCCCTTCACTCGCTCGGTTCGGCT
JMSF038K11+ CAACGCGATCTCCCCGATTCACCACCCCTTCACTCGCTCGGTTCGGCT
rJMSF027C02- CAACGCGATCTCCCCGATTCACCACCCCTTCACTCGCTCGGTTCGGCTATCAAATATTAT
JMSF027C02+ CAACGCGATCTCCCCGATTCACCACCCCTTCACTCGCTCGGTTCGGCTATCAAATATTAT
                      ____________________________________________________________
consensus CAACGCGATCTCCCCGATTCACCACCCCTTCACTCGCTCGGTTCGGCTATCAAATATTAT
 
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rJMSF027C02- ATACTCCGTATATATATATATATGATCGATCGTATACTCGTATCGAG
JMSF027C02+ ATACTCCGTATATATATATATATGATCGATCGTATACTCGTATCGAGAAGGTCGAAAATC
                      ____________________________________________________________
consensus ATACTCCGTATATATATATATATGATCGATCGTATACTCGTATCGAGAAGGTCGAAAATC
 
. : . : . : . : . : . :
JMSF027C02+ ACGAGTTTGAACAACGTTGGTAAATTCAATCCTACTTCAGCTGGGAGCTAGACGATTCTC
                      ____________________________________________________________
consensus ACGAGTTTGAACAACGTTGGTAAATTCAATCCTACTTCAGCTGGGAGCTAGACGATTCTC