Contig 005115:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF010I07Sequence320005115 (2)ref|XP_009622104.1|6e-46PREDICTED: transcription factor LHW-like [Nicotiana tomentosiformis]131011264 (2)
JMSF026O12Sequence643005115 (2)emb|CDP00193.1|3e-113unnamed protein product [Coffea canephora]131011264 (2)

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF026O12+ AACAGCAATCAAAGCTATGGTCTTAATACCAGATTGAAACTGC
                      ____________________________________________________________
consensus AACAGCAATCAAAGCTATGGTCTTAATACCAGATTGAAACTGC
 
. : . : . : . : . : . :
JMSF026O12+ GCTTCCCAGGTCCTTGGATGAGAGTCAGCAGAGTTATGCCATGCAGACAAGAAGTTGATT
                      ____________________________________________________________
consensus GCTTCCCAGGTCCTTGGATGAGAGTCAGCAGAGTTATGCCATGCAGACAAGAAGTTGATT
 
. : . : . : . : . : . :
JMSF026O12+ TCTTGATCATTTGGCTCTTTATAGATCCATTTATGGCTGTGATCTGCTGCTACTTTTCCA
                      ____________________________________________________________
consensus TCTTGATCATTTGGCTCTTTATAGATCCATTTATGGCTGTGATCTGCTGCTACTTTTCCA
 
. : . : . : . : . : . :
JMSF026O12+ ATTATACCTTCACCATAGTTGTAGATTTCGTGGGACATCTTGAAGAAGAGCTCCGGCTGC
                      ____________________________________________________________
consensus ATTATACCTTCACCATAGTTGTAGATTTCGTGGGACATCTTGAAGAAGAGCTCCGGCTGC
 
. : . : . : . : . : . :
JMSF026O12+ AGCCCTTGGTACTGCTGGTAATCGTACGCCGACGATGAACCCGCCGGACATTCTTCGGCA
                      ____________________________________________________________
consensus AGCCCTTGGTACTGCTGGTAATCGTACGCCGACGATGAACCCGCCGGACATTCTTCGGCA
 
. : . : . : . : . : . :
JMSF010I07+ CAAAGTTGCAAAACCCATCTTCCCAA
JMSF026O12+ TTCATCTCCCCCGCCGCCGCCGACGTCGACGCCGCAAAGTTGCAAAACCCATCTTCCCAA
                      ____________________________________________________________
consensus TTCATCTCCCCCGCCGCCGCCGACGTCGACGCCGCAAAGTTGCAAAACCCATCTTCCCAA
 
. : . : . : . : . : . :
JMSF010I07+ ACCAGTATCCAGTTTCTTCTGTTGCCTCTTGACCTGTCATACGCACTTCCTTGGCTGTCC
JMSF026O12+ ACCAGTATCCAGTTTCTTCTGTTGCCTCTTGACCTGTCATACGCACTTCCTTGGCTGTCC
                      ____________________________________________________________
consensus ACCAGTATCCAGTTTCTTCTGTTGCCTCTTGACCTGTCATACGCACTTCCTTGGCTGTCC
 
. : . : . : . : . : . :
JMSF010I07+ CACTTGGGAGGGGGATAATTTCTGGGCAAAATCCTCCAGAAAACGGCGTAAACCCACTGA
JMSF026O12+ CACTTGGGAGGGGGATAATTTCTGGGCAAAATCCTCCAGAAAACGGCGTAAACCCACTGA
                      ____________________________________________________________
consensus CACTTGGGAGGGGGATAATTTCTGGGCAAAATCCTCCAGAAAACGGCGTAAACCCACTGA
 
. : . : . : . : . : . :
JMSF010I07+ GAGTTTTCATGGATGCAAAGGCTTCTTAGGGTGTGTTGAAGAAGATGAGTAACAGCTAAG
JMSF026O12+ GAGTTTTCATGGATGCAAAGGCTTCTTAGGGTGTGTTGAAGAAGATGAGTAACAGCTAAG
                      ____________________________________________________________
consensus GAGTTTTCATGGATGCAAAGGCTTCTTAGGGTGTGTTGAAGAAGATGAGTAACAGCTAAG
 
. : . : . : . : . : . :
JMSF010I07+ GAGCTGAGCTGTTCTTCCATTTTTTTTCCTTTTCAGAGACCAAATTTTGGGTTCTATATT
JMSF026O12+ GAGCTGAGCTGTTCTTCCATTTTTTTTCCTTTTCAGAGACCAAATTTTGGGTTCTATATT
                      ____________________________________________________________
consensus GAGCTGAGCTGTTCTTCCATTTTTTTTCCTTTTCAGAGACCAAATTTTGGGTTCTATATT
 
. : . : . : . : . : . :
JMSF010I07+ ATTACTATTGGTATTTTTTTATTTTTTTATTTTTAATTTGATGGTGTTGTTCT
JMSF026O12+ ATTACTATTGGTATTTTTTTATTTTTTTATTTTTAATTTGATGGTGTTGTTCTGTCTTTC
                      ____________________________________________________________
consensus ATTACTATTGGTATTTTTTTATTTTTTTATTTTTAATTTGATGGTGTTGTTCTGTCTTTC