| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF050P06 | Sequence | 630 | 005104 (3) | ref|XP_006355305.1| | 2e-42 | PREDICTED: RNA polymerase sigma factor sigC-like [Solanum tuberosum] | 591 | 007002 (3) | ref|XP_009623297.1| | 3e-57 | PREDICTED: RNA polymerase sigma factor sigC isoform X2 [Nicotiana tomentosiform |
| JMSF025B24 | Sequence | 604 | 005104 (3) | ref|XP_009623296.1| | 7e-41 | PREDICTED: RNA polymerase sigma factor sigC isoform X1 [Nicotiana tomentosiform | 734 | 007002 (3) | ref|XP_009623297.1| | 7e-91 | PREDICTED: RNA polymerase sigma factor sigC isoform X2 [Nicotiana tomentosiform |
| JMSF044G16 | Sequence | 797 | 005104 (3) | ref|XP_006355305.1| | 6e-51 | PREDICTED: RNA polymerase sigma factor sigC-like [Solanum tuberosum] | 723 | 007002 (3) | ref|XP_006355305.1| | 3e-63 | PREDICTED: RNA polymerase sigma factor sigC-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
JMSF044G16+ CTTCACTGCTAGCAATTTTCTCTCTAGTATTTCTAAAATTTCGCCATGTTTTTCC
____________________________________________________________
consensus CTTCACTGCTAGCAATTTTCTCTCTAGTATTTCTAAAATTTCGCCATGTTTTTCC
. : . : . : . : . : . :
JMSF044G16+ AGAAGAAATATTTGGGTATTTTGACTCCAATTTGGATGTTTTTGGCTGCAGATGTAGTGT
____________________________________________________________
consensus AGAAGAAATATTTGGGTATTTTGACTCCAATTTGGATGTTTTTGGCTGCAGATGTAGTGT
. : . : . : . : . : . :
JMSF044G16+ AAAAACATCACTATTAGTATCGGACCGTTTCCTTCTTCTCAACTCTCTTTCCTGCTTTTT
____________________________________________________________
consensus AAAAACATCACTATTAGTATCGGACCGTTTCCTTCTTCTCAACTCTCTTTCCTGCTTTTT
. : . : . : . : . : . :
JMSF044G16+ CCCCGAGGTAACAACGATCTTATTCATGTGAATATTCAGGAGGTCGTTCTCCTGAGTTTC
JMFF050P06+ GAATATTCAGGAGGTCGTTCTCCTGAGTTTC
JMSF025B24+ TTTC
____________________________________________________________
consensus CCCCGAGGTAACAACGATCTTATTCATGTGAATATTCAGGAGGTCGTTCTCCTGAGTTTC
. : . : . : . : . : . :
JMSF044G16+ GTGAACAAGCTCAGTTGGCCTGTTTGTCAAATCAGAAAAGGGAAAAGATTTTTGACCCCT
JMFF050P06+ GTGAACAAGCTCAGTTGGCCTGTTTGTCAAATCAGAAAAGGGAAAAGATTTTTGACCCCT
JMSF025B24+ GTGAACAAGCTCAGTTGGCCTGTTTGTCAAATCAGAAAAGGGAAAAGATTTTTGACCCCT
____________________________________________________________
consensus GTGAACAAGCTCAGTTGGCCTGTTTGTCAAATCAGAAAAGGGAAAAGATTTTTGACCCCT
. : . : . : . : . : . :
JMSF044G16+ CGAGAGAAAAGTATTGAATAATTCCAGAGCTCCGAGCCTCTCAAGTTGTGCCAGAATATC
JMFF050P06+ CGAGAGAAAAGTATTGAATAATTCCAGAGCTCCGAGCCTCTCAAGTTGTGCCAGAATATC
JMSF025B24+ CGAGAGAAAAGTATTGAATAATTCCAGAGCTCCGAGCCTCTCAAGTTGTGCCAGAATATC
____________________________________________________________
consensus CGAGAGAAAAGTATTGAATAATTCCAGAGCTCCGAGCCTCTCAAGTTGTGCCAGAATATC
. : . : . : . : . : . :
JMSF044G16+ TCTTTCAAGTCCAACCACACATGAATCGGCAAAAATGTTTTCCAAAAGATCAAGATTTTT
JMFF050P06+ TCTTTCAAGTCCAACCACACATGAATCGGCAAAAATGTTTTCCAAAAGATCAAGATTTTT
JMSF025B24+ TCTTTCAAGTCCAACCACACATGAATCGGCAAAAATGTTTTCCAAAAGATCAAGATTTTT
____________________________________________________________
consensus TCTTTCAAGTCCAACCACACATGAATCGGCAAAAATGTTTTCCAAAAGATCAAGATTTTT
. : . : . : . : . : . :
JMSF044G16+ CATAAGTAAACTAAACTGTTTTCCTTTGCTTGATTTAAGGAATTTTAATTTGTCCTCCTC
JMFF050P06+ CATAAGTAAACTAAACTGTTTTCCTTTGCTTGATTTAAGGAATTTTAATTTGTCCTCCTC
JMSF025B24+ CATAAGTAAACTAAACTGTTTTCCTTTGCTTGATTTAAGGAATTTTAATTTGTCCTCCTC
____________________________________________________________
consensus CATAAGTAAACTAAACTGTTTTCCTTTGCTTGATTTAAGGAATTTTAATTTGTCCTCCTC
. : . : . : . : . : . :
JMSF044G16+ GGTTAACACCTCCCTGTTGTTTCCGATCACATCGTATAAGCTACTGTGAGATCCTACGCC
JMFF050P06+ GGTTAACACCTCCCTGTTGTTTCCGATCACATCGTATAAGCTACTGTGAGATCCTACGCC
JMSF025B24+ GGTTAACACCTCCCTGTTGTTTCCGATCACATCGTATAAGCTACTGTGAGATCCTACGCC
____________________________________________________________
consensus GGTTAACACCTCCCTGTTGTTTCCGATCACATCGTATAAGCTACTGTGAGATCCTACGCC
. : . : . : . : . : . :
JMSF044G16+ AATTTCCATTTCTGCAGTTACTGAGATTTCATTTTCCCGGAGCTGTCGGTCAGATAAACA
JMFF050P06+ AATTTCCATTTCTGCAGTTACTGAGATTTCATTTTCCCGGAGCTGTCGGTCAGATAAACA
JMSF025B24+ AATTTCCATTTCTGCAGTTACTGAGATTTCATTTTCCCGGAGCTGTCGGTCAGATAAACA
____________________________________________________________
consensus AATTTCCATTTCTGCAGTTACTGAGATTTCATTTTCCCGGAGCTGTCGGTCAGATAAACA
. : . : . : . : . : . :
JMSF044G16+ AGTCCTCACTCTGAAAGGATCAGTATGTGAAGCTTCATTCTCCCAGTGCATAAAAGACGG
JMFF050P06+ AGTCCTCACTCTGAAAGGATCAGTATGTGAAGCTTCATTCTCCCAGTGCATAAAAGACGG
JMSF025B24+ AGTCCTCACTCTGAAAGGATCAGTATGTGAAGCTTCATTCTCCCAGTGCATAAAAGACGG
____________________________________________________________
consensus AGTCCTCACTCTGAAAGGATCAGTATGTGAAGCTTCATTCTCCCAGTGCATAAAAGACGG
. : . : . : . : . : . :
JMSF044G16+ AGAAGTTCCAACCGAGTCATATAAAATCTCCCTTCCCTTTAATGAAGTTGAAGAAGGCCA
JMFF050P06+ AGAAGTTCCAACCGAGTCATATAAAATCTCCCTTCCCTTTAATGAAGTTGAAGAAGGCCA
JMSF025B24+ AGAAGTTCCAACCGAGTCATATAAAATCTCCCTTCCCTTTAATGAAGTTGAAGAAGGCCA
____________________________________________________________
consensus AGAAGTTCCAACCGAGTCATATAAAATCTCCCTTCCCTTTAATGAAGTTGAAGAAGGCCA
. : . : . : . : . : . :
JMSF044G16+ AGAAGATGATGATCTGAAAGAGAAAATTTGAGGGTGAGTTGAGAGACCCCATCTCAGGTG
JMFF050P06+ AGAAGATGATGATCTGAAAGAGAAAATTTGAGGGTGAGTTGAGAGACCCCATCTCAGGTG
JMSF025B24+ AGAAGATGATGATCTGAAAGAGAAAATTTGAGGGTGAGTTGAGAGACCCCATCTCAGGTG
____________________________________________________________
consensus AGAAGATGATGATCTGAAAGAGAAAATTTGAGGGTGAGTTGAGAGACCCCATCTCAGGTG
. : . : . : . : . : . :
JMSF044G16+ CAGCCTAAAACCCATATC
JMFF050P06+ CAGCCTAAAACCCATATCCACAGAGTTTGTTCAGAGAGGAGCAGAAGAAAAGTGCCCAT
JMSF025B24+ CAGCCTAAAACCCATATCCACAGAGTTTGTTCAGAGAGGAGCAGAAGAAAAGTGCCCATC
____________________________________________________________
consensus CAGCCTAAAACCCATATCCACAGAGTTTGTTCAGAGAGGAGCAGAAGAAAAGTGCCCATC