Contig 005074:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF022A04Sequence650005074 (4)ref|XP_009602013.1|2e-37PREDICTED: probable membrane-associated kinase regulator 6 isoform X2 [Nicotian771005678 (9)ref|XP_009610165.1|4e-33PREDICTED: DEAD-box ATP-dependent RNA helicase 24 isoform X1 [Nicotiana tomento
JMSF043B02Sequence703005074 (4)ref|XP_009602013.1|1e-38PREDICTED: probable membrane-associated kinase regulator 6 isoform X2 [Nicotian785005074 (4)ref|XP_009602013.1|6e-37PREDICTED: probable membrane-associated kinase regulator 6 isoform X2 [Nicotian
JMSF045O02Sequence712005074 (4)ref|XP_009602013.1|1e-40PREDICTED: probable membrane-associated kinase regulator 6 isoform X2 [Nicotian803005678 (9)ref|XP_009610165.1|6e-33PREDICTED: DEAD-box ATP-dependent RNA helicase 24 isoform X1 [Nicotiana tomento

Alignment

This contig is upended


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rJMSF043B02-                                                                   CCC
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consensus                                                                      CCC
 
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rJMSF043B02-          CATAACAATTCTTCATCCACAACAGTGTAGGAAAGGCAAAAAGTATTTTCAAAATCATTT
                      ____________________________________________________________
consensus             CATAACAATTCTTCATCCACAACAGTGTAGGAAAGGCAAAAAGTATTTTCAAAATCATTT
 
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rJMSF043B02-          CTTTTCCCCAGAAAATGCATGCCAATTGCCAAAGTGCCATTTTTTTTACTTCCCCAAGAA
                      ____________________________________________________________
consensus             CTTTTCCCCAGAAAATGCATGCCAATTGCCAAAGTGCCATTTTTTTTACTTCCCCAAGAA
 
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rJMSF043B02-          AACAAATCAGTACAGCACAGTAGAGAAGAGAAGAAAAAAAAAATTGACGGAAACGGCCTA
JMSF043B02+                                        GAAGAAAAAAAAAATTGACGGAAACGGCCTA
                      ____________________________________________________________
consensus             AACAAATCAGTACAGCACAGTAGAGAAGAGAAGAAAAAAAAAATTGACGGAAACGGCCTA
 
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rJMSF043B02-          CTTATCATCTTCACATGTCCCACACTCTCATCTCATCTCATCATTTATCCCCAACGATGG
JMSF043B02+           CTTATCATCTTCACATGTCCCACACTCTCATCTCATCTCATCATTTATCCCCAACGATGG
JMSF045O02+                  TCTTCACATGTCCCACACTCTCATCTCATCTCATCATTTATCCCCAACGATGG
                      ____________________________________________________________
consensus             CTTATCATCTTCACATGTCCCACACTCTCATCTCATCTCATCATTTATCCCCAACGATGG
 
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rJMSF043B02-          TTCTCTTGCAATGCANAACCGCCTCGTGGATCGAGCTCTCGGAGTCGCAAGACCGGCGCC
JMSF043B02+           TTCTCTTGCAATGCAGAACCGCCTCGTGGATCGAGCTCTCGGAGTCGCAAGACCGGCGCC
JMSF045O02+           TTCTCTTGCAATGCAGAACCGCCTCGTGGATCGAGCTCTCGGAGTCGCAAGACCGGCGCC
JMSF022A04+                    AATGCAGAACCGCCTCGTGGATCGAGCTCTCGGAGTCGCAAGACCGGCGCC
                      ____________________________________________________________
consensus             TTCTCTTGCAATGCAGAACCGCCTCGTGGATCGAGCTCTCGGAGTCGCAAGACCGGCGCC
 
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rJMSF043B02-          AGTTATCATCAGAGTAGGCCGCGCCGGTTGAAACCGCGCCGGAAAATTC--ATCTCTTCC
JMSF043B02+           AGTTATCATCAGAGTAGGCCGCGCCGGTTGAAACCGCGCCGGAAAATTC--ATCTCTTCC
JMSF045O02+           AGTTATCATCAGAGTAGGCCGCGCCGGTTG-AACCGCGCCGGAAAATTCATATCTCTTCC
JMSF022A04+           AGTTATCATCAGAGTAGGCCGCGCCGGTTG-AACCGCGCCGGAAAATTCATATCTCTTCC
                      ____________________________________________________________
consensus             AGTTATCATCAGAGTAGGCCGCGCCGGTTGAAACCGCGCCGGAAAATTC--ATCTCTTCC
 
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rJMSF043B02-          TCTCCTCCGCTCTGGAGCTTCTCCGTCCGTAGGCGAATCCGAATCTCCGCAGTTTCACAC
JMSF043B02+           TCTCCTCCGCTCTGGAGCTTCTCCGTCCGTAGGCGAATCCGAATCTCCGCAGTTTCACAC
JMSF045O02+           TCTCCTCCGCTCTGGAGCTTCTCCGTCCGTAGGCGAATCCGAATCTCCGCAGTTTCACAC
JMSF022A04+           TCTCCTCCGCTCTGGAGCTTCTCCGTCCGTAGGCGAATCCGAATCTCCGCAGTTTCACAC
                      ____________________________________________________________
consensus             TCTCCTCCGCTCTGGAGCTTCTCCGTCCGTAGGCGAATCCGAATCTCCGCAGTTTCACAC
 
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rJMSF043B02-          AAATCGGCCTAATTACGTCCAAATACCGGCGGAAGATCCGCCTGGATAATCTCTGGCATC
JMSF043B02+           AAATCGGCCTAATTACGTCCAAATACCGGCGGAAGATCCGCCTGGATAATCTCTGGCATC
JMSF045O02+           AAATCGGCCTAATTACGTCCAAATACCGGCGGAAGATCCGCCTGGATAATCTCTGGCATC
JMSF022A04+           AAATCGGCCTAATTACGTCCAAATACCGGCGGAAGATCCGCCTGGATAATCTCTGGCATC
                      ____________________________________________________________
consensus             AAATCGGCCTAATTACGTCCAAATACCGGCGGAAGATCCGCCTGGATAATCTCTGGCATC
 
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rJMSF043B02-          TTTTCAGCGGGGCGCAACGGATTTCGTCGGATGAACGGACCTGATCTTGTTTGGTAGGTT
JMSF043B02+           TTTTCAGCGGGGCGCAACGGATTTCGTCGGATGAACGGACCTGATCTTGTTTGGTAGGTT
JMSF045O02+           TTTTCAGCGGGGCGCAACGGATTTCGTCGGATGAACGGACCTGATCTTGTTTGGTAGGTT
JMSF022A04+           TTTTCAGCGGGGCGCAACGGATTTCGTCGGATGAACGGACCTGATCTTGTTTGGTAGGTT
                      ____________________________________________________________
consensus             TTTTCAGCGGGGCGCAACGGATTTCGTCGGATGAACGGACCTGATCTTGTTTGGTAGGTT
 
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rJMSF043B02-          GTTGAGGCGAATCGAAAGCGCGATCGAAGGAGTCGGACTTGATAGGTTGGGCGAACAGAG
JMSF043B02+           GTTGAGGCGAATCGAAAGCGCGATCGAAGGAGTCGGACTTGATAGGTTGGGCGAACAGAG
JMSF045O02+           GTTGAGGCGAATCGAAAGCGCGATCGAAGGAGTCGGACTTGATAGGTTGGGCGAACAGAG
JMSF022A04+           GTTGAGGCGAATCGAAAGCGCGATCGAAGGAGTCGGACTTGATAGGTTGGGCGAACAGAG
                      ____________________________________________________________
consensus             GTTGAGGCGAATCGAAAGCGCGATCGAAGGAGTCGGACTTGATAGGTTGGGCGAACAGAG
 
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rJMSF043B02-          GCACGAGGAAGCCATTGGAGATGAGCTCATCGGCATGAAGGAGCGCCAATGGAGATTCCG
JMSF043B02+           GCACGAGGAAGCCATTGGAGATGAGCTCATCGGCATGAAGGAGCGCCAATGGAGATTCCG
JMSF045O02+           GCACGAGGAAGCCATTGGAGATGAGCTCATCGGCATGAAGGAGCGCCAATGGAGATTCCG
JMSF022A04+           GCACGAGGAAGCCATTGGAGATGAGCTCATCGGCATGAAGGAGCGCCAATGGAGATTCCG
                      ____________________________________________________________
consensus             GCACGAGGAAGCCATTGGAGATGAGCTCATCGGCATGAAGGAGCGCCAATGGAGATTCCG
 
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rJMSF043B02-          ACACCGGAAAGTCGAAGCTGCTAAACTCCGGGAGGCTAACGCTGAANAATCTCTGAGAAG
JMSF043B02+           ACACCGGAAAGTCGAAGCTGCTAAACTCCGGGAGGCTAACGCTGAAGAATCTCTGAGAAG
JMSF045O02+           ACACCGGAAAGTCGAAGCTGCTAAACTCCGGGAGGCTAACGCTGAAGAATCTCTGAGAAG
JMSF022A04+           ACACCGGAAAGTCGAAGCTGCTAAACTCCGGGAGGCTAACGCTGAAGAATCTCTGAGAAG
                      ____________________________________________________________
consensus             ACACCGGAAAGTCGAAGCTGCTAAACTCCGGGAGGCTAACGCTGAAGAATCTCTGAGAAG
 
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rJMSF043B02-          GGGGGAGTGTAGGATCCATTTCAATGAAGGAAGCTTCATCGGAGCCCCGGAAAGAGCCTT
JMSF043B02+           GGGGGAGTGTAGGATCCATTTCAATGAAGGAAGCTTCATCGGAGCCCCGGAAAGAGCCTT
JMSF045O02+           GGGGGAGTGTAGGATCCATTTCAATGAAGGAAGCTTCATCGGAGCCCCGGAAAGAGCCTT
JMSF022A04+           GGGGGAGTGTAGGATCCATTTCAATGAAGGAAGCTTCATCGGAGCCCCGGAAAGAGCCTT
                      ____________________________________________________________
consensus             GGGGGAGTGTAGGATCCATTTCAATGAAGGAAGCTTCATCGGAGCCCCGGAAAGAGCCTT
 
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rJMSF043B02-          CCGG                                                        
JMSF043B02+           CCGGATTCACCGACCAGCTGTGAGAGAAGCTCTCAATGGAGAGAGAGTGAGAGGAGGTTT
JMSF045O02+           CCGGATTCACCGACCAGCTGTGAGAGAAGCTCTCAATGGAGAGAGAGTGAGAGGAGGTTT
JMSF022A04+           CCGGATTCACCGACCAGCTGTGAGAGAAGCTCTCAATGGAGAGAGAGTGAGAGGAGGTTT
                      ____________________________________________________________
consensus             CCGGATTCACCGACCAGCTGTGAGAGAAGCTCTCAATGGAGAGAGAGTGAGAGGAGGTTT
 
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JMSF043B02+           CCATGGCTTTGAG                                               
JMSF045O02+           CCATGGCTTTGAGATTTTTAGTTTGAATGAGTTGTTTTATGAAATATAGATCAGAGGACC
JMSF022A04+           CCATGGCTTTGAGATTTTTAGTTTGAATGAGTTGTTTTATGAAATATAGATCAGAGGACC
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consensus             CCATGGCTTTGAGATTTTTAGTTTGAATGAGTTGTTTTATGAAATATAGATCAGAGGACC