clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF022A04 | Sequence | 650 | 005074 (4) | ref|XP_009602013.1| | 2e-37 | PREDICTED: probable membrane-associated kinase regulator 6 isoform X2 [Nicotian | 771 | 005678 (9) | ref|XP_009610165.1| | 4e-33 | PREDICTED: DEAD-box ATP-dependent RNA helicase 24 isoform X1 [Nicotiana tomento |
JMSF043B02 | Sequence | 703 | 005074 (4) | ref|XP_009602013.1| | 1e-38 | PREDICTED: probable membrane-associated kinase regulator 6 isoform X2 [Nicotian | 785 | 005074 (4) | ref|XP_009602013.1| | 6e-37 | PREDICTED: probable membrane-associated kinase regulator 6 isoform X2 [Nicotian |
JMSF045O02 | Sequence | 712 | 005074 (4) | ref|XP_009602013.1| | 1e-40 | PREDICTED: probable membrane-associated kinase regulator 6 isoform X2 [Nicotian | 803 | 005678 (9) | ref|XP_009610165.1| | 6e-33 | PREDICTED: DEAD-box ATP-dependent RNA helicase 24 isoform X1 [Nicotiana tomento |
This contig is upended
. : . : . : . : . : . :
rJMSF043B02- CCC
____________________________________________________________
consensus CCC
. : . : . : . : . : . :
rJMSF043B02- CATAACAATTCTTCATCCACAACAGTGTAGGAAAGGCAAAAAGTATTTTCAAAATCATTT
____________________________________________________________
consensus CATAACAATTCTTCATCCACAACAGTGTAGGAAAGGCAAAAAGTATTTTCAAAATCATTT
. : . : . : . : . : . :
rJMSF043B02- CTTTTCCCCAGAAAATGCATGCCAATTGCCAAAGTGCCATTTTTTTTACTTCCCCAAGAA
____________________________________________________________
consensus CTTTTCCCCAGAAAATGCATGCCAATTGCCAAAGTGCCATTTTTTTTACTTCCCCAAGAA
. : . : . : . : . : . :
rJMSF043B02- AACAAATCAGTACAGCACAGTAGAGAAGAGAAGAAAAAAAAAATTGACGGAAACGGCCTA
JMSF043B02+ GAAGAAAAAAAAAATTGACGGAAACGGCCTA
____________________________________________________________
consensus AACAAATCAGTACAGCACAGTAGAGAAGAGAAGAAAAAAAAAATTGACGGAAACGGCCTA
. : . : . : . : . : . :
rJMSF043B02- CTTATCATCTTCACATGTCCCACACTCTCATCTCATCTCATCATTTATCCCCAACGATGG
JMSF043B02+ CTTATCATCTTCACATGTCCCACACTCTCATCTCATCTCATCATTTATCCCCAACGATGG
JMSF045O02+ TCTTCACATGTCCCACACTCTCATCTCATCTCATCATTTATCCCCAACGATGG
____________________________________________________________
consensus CTTATCATCTTCACATGTCCCACACTCTCATCTCATCTCATCATTTATCCCCAACGATGG
. : . : . : . : . : . :
rJMSF043B02- TTCTCTTGCAATGCANAACCGCCTCGTGGATCGAGCTCTCGGAGTCGCAAGACCGGCGCC
JMSF043B02+ TTCTCTTGCAATGCAGAACCGCCTCGTGGATCGAGCTCTCGGAGTCGCAAGACCGGCGCC
JMSF045O02+ TTCTCTTGCAATGCAGAACCGCCTCGTGGATCGAGCTCTCGGAGTCGCAAGACCGGCGCC
JMSF022A04+ AATGCAGAACCGCCTCGTGGATCGAGCTCTCGGAGTCGCAAGACCGGCGCC
____________________________________________________________
consensus TTCTCTTGCAATGCAGAACCGCCTCGTGGATCGAGCTCTCGGAGTCGCAAGACCGGCGCC
. : . : . : . : . : . :
rJMSF043B02- AGTTATCATCAGAGTAGGCCGCGCCGGTTGAAACCGCGCCGGAAAATTC--ATCTCTTCC
JMSF043B02+ AGTTATCATCAGAGTAGGCCGCGCCGGTTGAAACCGCGCCGGAAAATTC--ATCTCTTCC
JMSF045O02+ AGTTATCATCAGAGTAGGCCGCGCCGGTTG-AACCGCGCCGGAAAATTCATATCTCTTCC
JMSF022A04+ AGTTATCATCAGAGTAGGCCGCGCCGGTTG-AACCGCGCCGGAAAATTCATATCTCTTCC
____________________________________________________________
consensus AGTTATCATCAGAGTAGGCCGCGCCGGTTGAAACCGCGCCGGAAAATTC--ATCTCTTCC
. : . : . : . : . : . :
rJMSF043B02- TCTCCTCCGCTCTGGAGCTTCTCCGTCCGTAGGCGAATCCGAATCTCCGCAGTTTCACAC
JMSF043B02+ TCTCCTCCGCTCTGGAGCTTCTCCGTCCGTAGGCGAATCCGAATCTCCGCAGTTTCACAC
JMSF045O02+ TCTCCTCCGCTCTGGAGCTTCTCCGTCCGTAGGCGAATCCGAATCTCCGCAGTTTCACAC
JMSF022A04+ TCTCCTCCGCTCTGGAGCTTCTCCGTCCGTAGGCGAATCCGAATCTCCGCAGTTTCACAC
____________________________________________________________
consensus TCTCCTCCGCTCTGGAGCTTCTCCGTCCGTAGGCGAATCCGAATCTCCGCAGTTTCACAC
. : . : . : . : . : . :
rJMSF043B02- AAATCGGCCTAATTACGTCCAAATACCGGCGGAAGATCCGCCTGGATAATCTCTGGCATC
JMSF043B02+ AAATCGGCCTAATTACGTCCAAATACCGGCGGAAGATCCGCCTGGATAATCTCTGGCATC
JMSF045O02+ AAATCGGCCTAATTACGTCCAAATACCGGCGGAAGATCCGCCTGGATAATCTCTGGCATC
JMSF022A04+ AAATCGGCCTAATTACGTCCAAATACCGGCGGAAGATCCGCCTGGATAATCTCTGGCATC
____________________________________________________________
consensus AAATCGGCCTAATTACGTCCAAATACCGGCGGAAGATCCGCCTGGATAATCTCTGGCATC
. : . : . : . : . : . :
rJMSF043B02- TTTTCAGCGGGGCGCAACGGATTTCGTCGGATGAACGGACCTGATCTTGTTTGGTAGGTT
JMSF043B02+ TTTTCAGCGGGGCGCAACGGATTTCGTCGGATGAACGGACCTGATCTTGTTTGGTAGGTT
JMSF045O02+ TTTTCAGCGGGGCGCAACGGATTTCGTCGGATGAACGGACCTGATCTTGTTTGGTAGGTT
JMSF022A04+ TTTTCAGCGGGGCGCAACGGATTTCGTCGGATGAACGGACCTGATCTTGTTTGGTAGGTT
____________________________________________________________
consensus TTTTCAGCGGGGCGCAACGGATTTCGTCGGATGAACGGACCTGATCTTGTTTGGTAGGTT
. : . : . : . : . : . :
rJMSF043B02- GTTGAGGCGAATCGAAAGCGCGATCGAAGGAGTCGGACTTGATAGGTTGGGCGAACAGAG
JMSF043B02+ GTTGAGGCGAATCGAAAGCGCGATCGAAGGAGTCGGACTTGATAGGTTGGGCGAACAGAG
JMSF045O02+ GTTGAGGCGAATCGAAAGCGCGATCGAAGGAGTCGGACTTGATAGGTTGGGCGAACAGAG
JMSF022A04+ GTTGAGGCGAATCGAAAGCGCGATCGAAGGAGTCGGACTTGATAGGTTGGGCGAACAGAG
____________________________________________________________
consensus GTTGAGGCGAATCGAAAGCGCGATCGAAGGAGTCGGACTTGATAGGTTGGGCGAACAGAG
. : . : . : . : . : . :
rJMSF043B02- GCACGAGGAAGCCATTGGAGATGAGCTCATCGGCATGAAGGAGCGCCAATGGAGATTCCG
JMSF043B02+ GCACGAGGAAGCCATTGGAGATGAGCTCATCGGCATGAAGGAGCGCCAATGGAGATTCCG
JMSF045O02+ GCACGAGGAAGCCATTGGAGATGAGCTCATCGGCATGAAGGAGCGCCAATGGAGATTCCG
JMSF022A04+ GCACGAGGAAGCCATTGGAGATGAGCTCATCGGCATGAAGGAGCGCCAATGGAGATTCCG
____________________________________________________________
consensus GCACGAGGAAGCCATTGGAGATGAGCTCATCGGCATGAAGGAGCGCCAATGGAGATTCCG
. : . : . : . : . : . :
rJMSF043B02- ACACCGGAAAGTCGAAGCTGCTAAACTCCGGGAGGCTAACGCTGAANAATCTCTGAGAAG
JMSF043B02+ ACACCGGAAAGTCGAAGCTGCTAAACTCCGGGAGGCTAACGCTGAAGAATCTCTGAGAAG
JMSF045O02+ ACACCGGAAAGTCGAAGCTGCTAAACTCCGGGAGGCTAACGCTGAAGAATCTCTGAGAAG
JMSF022A04+ ACACCGGAAAGTCGAAGCTGCTAAACTCCGGGAGGCTAACGCTGAAGAATCTCTGAGAAG
____________________________________________________________
consensus ACACCGGAAAGTCGAAGCTGCTAAACTCCGGGAGGCTAACGCTGAAGAATCTCTGAGAAG
. : . : . : . : . : . :
rJMSF043B02- GGGGGAGTGTAGGATCCATTTCAATGAAGGAAGCTTCATCGGAGCCCCGGAAAGAGCCTT
JMSF043B02+ GGGGGAGTGTAGGATCCATTTCAATGAAGGAAGCTTCATCGGAGCCCCGGAAAGAGCCTT
JMSF045O02+ GGGGGAGTGTAGGATCCATTTCAATGAAGGAAGCTTCATCGGAGCCCCGGAAAGAGCCTT
JMSF022A04+ GGGGGAGTGTAGGATCCATTTCAATGAAGGAAGCTTCATCGGAGCCCCGGAAAGAGCCTT
____________________________________________________________
consensus GGGGGAGTGTAGGATCCATTTCAATGAAGGAAGCTTCATCGGAGCCCCGGAAAGAGCCTT
. : . : . : . : . : . :
rJMSF043B02- CCGG
JMSF043B02+ CCGGATTCACCGACCAGCTGTGAGAGAAGCTCTCAATGGAGAGAGAGTGAGAGGAGGTTT
JMSF045O02+ CCGGATTCACCGACCAGCTGTGAGAGAAGCTCTCAATGGAGAGAGAGTGAGAGGAGGTTT
JMSF022A04+ CCGGATTCACCGACCAGCTGTGAGAGAAGCTCTCAATGGAGAGAGAGTGAGAGGAGGTTT
____________________________________________________________
consensus CCGGATTCACCGACCAGCTGTGAGAGAAGCTCTCAATGGAGAGAGAGTGAGAGGAGGTTT
. : . : . : . : . : . :
JMSF043B02+ CCATGGCTTTGAG
JMSF045O02+ CCATGGCTTTGAGATTTTTAGTTTGAATGAGTTGTTTTATGAAATATAGATCAGAGGACC
JMSF022A04+ CCATGGCTTTGAGATTTTTAGTTTGAATGAGTTGTTTTATGAAATATAGATCAGAGGACC
____________________________________________________________
consensus CCATGGCTTTGAGATTTTTAGTTTGAATGAGTTGTTTTATGAAATATAGATCAGAGGACC