Contig 005073:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001C07Sequence220005073 (4)ref|XP_006344572.1|94.4PREDICTED: uncharacterized protein LOC102592314 [Solanum tuberosum]771021347ref|XP_006372225.1|6e-14tRNA pseudouridine synthase family protein [Populus trichocarpa] gb|ERP50022.1|
JMSF021P18Sequence651005073 (4)ref|XP_009763656.1|6e-96PREDICTED: uncharacterized protein LOC104215532 isoform X4 [Nicotiana sylvestri788014050 (3)ref|XP_004242889.1|214PREDICTED: uncharacterized protein LOC101257579 [Solanum lycopersicum]
JMSF028E08Sequence619005073 (4)ref|XP_009763656.1|2e-93PREDICTED: uncharacterized protein LOC104215532 isoform X4 [Nicotiana sylvestri692014050 (3)ref|XP_006372225.1|4e-14tRNA pseudouridine synthase family protein [Populus trichocarpa] gb|ERP50022.1|
JMSF038H09Sequence658005073 (4)ref|XP_009763656.1|4e-99PREDICTED: uncharacterized protein LOC104215532 isoform X4 [Nicotiana sylvestri894014050 (3)ref|XP_004242889.1|224PREDICTED: uncharacterized protein LOC101257579 [Solanum lycopersicum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF038H09+ TGCTATGCTATTTAT
                      ____________________________________________________________
consensus TGCTATGCTATTTAT
 
. : . : . : . : . : . :
JMSF028E08+ CCTTGACATCCTTTCTCCAAGTATAGAAAGAACAGACTTG
JMSF038H09+ AGCATCTGCAATATCTTGAACCTTGACATCCTTTCTCCAAGTATAGAAAGAACAGACTTG
JMSF021P18+ AATATCTTGAACCTTGACATCCTTTCTCCAAGTATAGAAAGAACAGACTTG
                      ____________________________________________________________
consensus AGCATCTGCAATATCTTGAACCTTGACATCCTTTCTCCAAGTATAGAAAGAACAGACTTG
 
. : . : . : . : . : . :
JMSF028E08+ TTGAGAAGCTGAAACACCCTTATCAGTGCGCCCAGCAACTACAGCACAACCTTCTAATGG
JMSF038H09+ TTGAGAAGCTGAAACACCCTTATCAGTGCGCCCAGCAACTACAGCACAACCTTCTAATGG
JMSF021P18+ TTGAGAAGCTGAAACACCCTTATCAGTGCGCCCAGCAACTACAGCACAACCTTCTAATGG
                      ____________________________________________________________
consensus TTGAGAAGCTGAAACACCCTTATCAGTGCGCCCAGCAACTACAGCACAACCTTCTAATGG
 
. : . : . : . : . : . :
JMSF028E08+ TAAGTTCTTATCCTTTAGTTGTTGAGCTTTTTTCTCATCAACAAATTGTCCAAGAGCTCT
JMSF038H09+ TAAGTTCTTATCCTTTAGTTGTTGAGCTTTTTTCTCATCAACAAATTGTCCAAGAGCTCT
JMSF021P18+ TAAGTTCTTATCCTTTAGTTGTTGAGCTTTTTTCTCATCAACAAATTGTCCAAGAGCTCT
                      ____________________________________________________________
consensus TAAGTTCTTATCCTTTAGTTGTTGAGCTTTTTTCTCATCAACAAATTGTCCAAGAGCTCT
 
. : . : . : . : . : . :
JMSF028E08+ TTCGACCAACTCCTGAACTGTAGTCAGACCAGGCTGCTTCTGCCAGCCACCAAAGGAGGC
JMSF038H09+ TTCGACCAACTCCTGAACTGTAGTCAGACCAGGCTGCTTCTGCCAGCCACCAAAGGAGGC
JMSF021P18+ TTCGACCAACTCCTGAACTGTAGTCAGACCAGGCTGCTTCTGCCAGCCACCAAAGGAGGC
                      ____________________________________________________________
consensus TTCGACCAACTCCTGAACTGTAGTCAGACCAGGCTGCTTCTGCCAGCCACCAAAGGAGGC
 
. : . : . : . : . : . :
JMSF028E08+ CCCATGATATGATAGGACTATCTTAAACGTCACTCTTGCCCATCTCCCTGTCCTATCTTC
JMSF038H09+ CCCATGATATGATAGGACTATCTTAAACGTCACTCTTGCCCATCTCCCTGTCCTATCTTC
JMSF021P18+ CCCATGATATGATAGGACTATCTTAAACGTCACTCTTGCCCATCTCCCTGTCCTATCTTC
                      ____________________________________________________________
consensus CCCATGATATGATAGGACTATCTTAAACGTCACTCTTGCCCATCTCCCTGTCCTATCTTC
 
. : . : . : . : . : . :
JMSF028E08+ AACTGGAAAACTACCTAACTCCGATTTCACAAAATCTTCTATAGCTTCGGCATCATCTTG
JMSF038H09+ AACTGGAAAACTACCTAACTCCGATTTCACAAAATCTTCTATAGCTTCGGCATCATCTTG
JMSF021P18+ AACTGGAAAACTACCTAACTCCGATTTCACAAAATCTTCTATAGCTTCGGCATCATCTTG
                      ____________________________________________________________
consensus AACTGGAAAACTACCTAACTCCGATTTCACAAAATCTTCTATAGCTTCGGCATCATCTTG
 
. : . : . : . : . : . :
JMSF028E08+ AATAGGATGCGACAGTGGTGGAACCTCTTTTTGAAACAATCCTGCCAAATTTGACTGGCC
JMSF038H09+ AATAGGATGCGACAGTGGTGGAACCTCTTTTTGAAACAATCCTGCCAAATTTGACTGGCC
JMSF021P18+ AATAGGATGCGACAGTGGTGGAACCTCTTTTTGAAACAATCCTGCCAAATTTGACTGGCC
                      ____________________________________________________________
consensus AATAGGATGCGACAGTGGTGGAACCTCTTTTTGAAACAATCCTGCCAAATTTGACTGGCC
 
. : . : . : . : . : . :
JMSF028E08+ TTTCACCATTTCTGTATAAAAATCAACAATTTTTTGCCATGGCCTAGCAGACATGAACTG
JMSF038H09+ TTTCACCATTTCTGTATAAAAATCAACAATTTTTTGCCATGGCCTAGCAGACATGAACTG
JMSF001C07+ TTCTGTATAAAAATCAACAATTTTTTGCCATGGCCTAGCAGACATGAACTG
JMSF021P18+ TTTCACCATTTCTGTATAAAAATCAACAATTTTTTGCCATGGCCTAGCAGACATGAACTG
                      ____________________________________________________________
consensus TTTCACCATTTCTGTATAAAAATCAACAATTTTTTGCCATGGCCTAGCAGACATGAACTG
 
. : . : . : . : . : . :
JMSF028E08+ GTAACATTCCTTGGAAGTCCATCTGGAGAATTTGCAGGAATCAGTGTGGTTGTAGTGATA
JMSF038H09+ GTAACATTCCTTGGAAGTCCATCTGGAGAATTTGCAGGAATCAGTGTGGTTGTAGTGATA
JMSF001C07+ GTAACATTCCTTGGAAGTCCATCTGGAGAATTTGCAGGAATCAGTGTGGTTGTAGTGATA
JMSF021P18+ GTAACATTCCTTGGAAGTCCATCTGGAGAATTTGCAGGAATCAGTGTGGTTGTAGTGATA
                      ____________________________________________________________
consensus GTAACATTCCTTGGAAGTCCATCTGGAGAATTTGCAGGAATCAGTGTGGTTGTAGTGATA
 
. : . : . : . : . : . :
JMSF028E08+ AACCTTCTTAGGAGCCGCTTGCTGACTTTCCATAATGTTTTTTATGGTCCGCACCACCGT
JMSF038H09+ AACCTTCTTAGGAGCCGCTTGCTGACTTTCCATAATGTTTTTTATGGTCCGCACCACCGT
JMSF001C07+ AACCTTCTTAGGAGCCGCTTGCTGACTTTCCATAATGTTTTTTATGGTCCGCACCACCGT
JMSF021P18+ AACCTTCTTAGGAGCCGCTTGCTGACTTTCCATAATGTTTTTTATGGTCCGCACCACCGT
                      ____________________________________________________________
consensus AACCTTCTTAGGAGCCGCTTGCTGACTTTCCATAATGTTTTTTATGGTCCGCACCACCGT
 
. : . : . : . : . : . :
JMSF028E08+ CGGAGAGTTTATCATGACCACTGCCGCCGTTCGTCTC
JMSF038H09+ CGGAGAGTTTATCATGACCACTGCCGCCGTTCGTCTC
JMSF001C07+ CGGAGAGTTTATCATGACCACTGCCGCCGTTCGTCTCTGCCC
JMSF021P18+ CGGAGAGTTTATCATGACCACTGCCGCCGTTCGTCTCTGCCCGAAATGGTATTGTCAGCC
                      ____________________________________________________________
consensus CGGAGAGTTTATCATGACCACTGCCGCCGTTCGTCTCTGCCCGAAATGGTATTGTCAGCC