| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF012J09 | Sequence | 476 | 005069 (9) | ref|XP_004236894.1| | 2e-42 | PREDICTED: outer envelope pore protein 37, chloroplastic [Solanum lycopersicum] | 762 | 005069 (9) | ref|XP_010672516.1| | 5e-90 | PREDICTED: outer envelope pore protein 37, chloroplastic [Beta vulgaris subsp. |
| JMFF019P13 | Sequence | 592 | 005069 (9) | ref|XP_004236894.1| | 3e-66 | PREDICTED: outer envelope pore protein 37, chloroplastic [Solanum lycopersicum] | 800 | 005069 (9) | ref|XP_010672516.1| | 3e-71 | PREDICTED: outer envelope pore protein 37, chloroplastic [Beta vulgaris subsp. |
| JMFF029K16 | Sequence | 581 | 005069 (9) | ref|XP_004236894.1| | 7e-64 | PREDICTED: outer envelope pore protein 37, chloroplastic [Solanum lycopersicum] | 732 | 005069 (9) | ref|XP_004236894.1| | 9e-88 | PREDICTED: outer envelope pore protein 37, chloroplastic [Solanum lycopersicum] |
| JMFF049D20 | Sequence | 624 | 005069 (9) | ref|XP_004236894.1| | 9e-69 | PREDICTED: outer envelope pore protein 37, chloroplastic [Solanum lycopersicum] | 611 | 005069 (9) | ref|XP_010672516.1| | 5e-63 | PREDICTED: outer envelope pore protein 37, chloroplastic [Beta vulgaris subsp. |
| JMSF021G07 | Sequence | 620 | 005069 (9) | ref|XP_004236894.1| | 1e-68 | PREDICTED: outer envelope pore protein 37, chloroplastic [Solanum lycopersicum] | 431 | 011677 (8) | emb|CDO97835.1| | 2e-32 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMFF049D20- GTGTCAAATGTTTCATTAGTATAAGAAGATTAAACATACAAAAGATTCAAACTTATCTTG
rJMFF012J09- TATAAGAAGATTAAACATACAAAAGATTCAAACTTATCTTG
rJMFF029K16- CTTATCTTG
rJMFF019P13- AACATACAAAAGATTCAAACTTATCTTG
____________________________________________________________
consensus GTGTCAAATGTTTCATTAGTATAAGAAGATTAAACATACAAAAGATTCAAACTTATCTTG
. : . : . : . : . : . :
rJMFF049D20- AGAATGTTTCAGCTTATACACCAGTAAATGTCAATTGTCATGTCCAACTAATCTGTCCTG
rJMFF012J09- AGAATGTTTCAGCTTATACACCAGTAAATGTCAATTGTCATGTCCAACTAATCTGTCCTG
rJMFF029K16- AGAATGTTTCAGCTTATACACCAGTAAATGTCAATTGTCATGTCCAACTAATCTGTCCTG
rJMFF019P13- AGAATGTTTCAGCTTATACACCAGTAAATGTCAATTGTCATGTCCAACTAATCTGTCCTG
____________________________________________________________
consensus AGAATGTTTCAGCTTATACACCAGTAAATGTCAATTGTCATGTCCAACTAATCTGTCCTG
. : . : . : . : . : . :
rJMFF049D20- GTGGGCATCATGTGCACATATATAGTGACAGAGGGGAGTAGAGGGCGGGGGAGAAAAATG
rJMFF012J09- GTGGGCATCATGTGCACATATATAGTGACAGAGGGGAGTAGAGGGCGGGGGAGAAAAATG
rJMFF029K16- GTGGGCATCATGTGCACATATATAGTGACAGAGGGGAGTAGAGGGCGGGGGAGAAAAATG
rJMFF019P13- GTGGGCATCATGTGCACATATATAGTGACAGAGGGGAGTAGAGGGCGGGGGAGAAAAATG
____________________________________________________________
consensus GTGGGCATCATGTGCACATATATAGTGACAGAGGGGAGTAGAGGGCGGGGGAGAAAAATG
. : . : . : . : . : . :
rJMFF049D20- TCTAAGGCTTTGTGCAAGGGGAAAAGTATTGATAGAAATGCCCCATCTTACCATTAAACT
rJMFF012J09- TCTAAGGCTTTGTGCAAGGGGAAAAGTATTGATAGAAATGCCCCATCTTACCATTAAACT
rJMFF029K16- TCTAAGGCTTTGTGCAAGGGGAAAAGTATTGATAGAAATGCCCCATCTTACCATTAAACT
rJMFF019P13- TCTAAGGCTTTGTGCAAGGGGAAAAGTATTGATAGAAATGCCCCATCTTACCATTAAACT
____________________________________________________________
consensus TCTAAGGCTTTGTGCAAGGGGAAAAGTATTGATAGAAATGCCCCATCTTACCATTAAACT
. : . : . : . : . : . :
rJMFF049D20- TTTCAAAGGATAGGAAAGCATCATTTCTGCCTTTACCTTACAGCAACATCATATCATAAG
rJMFF012J09- TTTCAAAGGATAGGAAAGCATCATTTCTGCCTTTACCTTACAGCAACATCATATCATAAG
rJMFF029K16- TTTCAAAGGATAGGAAAGCATCATTTCTGCCTTTACCTTACAGCAACATCATATCATAAG
rJMFF019P13- TTTCAAAGGATAGGAAAGCATCATTTCTGCCTTTACCTTACAGCAACATCATATCATAAG
____________________________________________________________
consensus TTTCAAAGGATAGGAAAGCATCATTTCTGCCTTTACCTTACAGCAACATCATATCATAAG
. : . : . : . : . : . :
rJMFF049D20- TCCCATCTCTTCTTCACGCGGAACATCAGGGCTGATGATGTGATATCATCTTGCGGCACT
rJMFF012J09- TCCCATCTCTTCTTCACGCGGAACATCAGGGCTGATGATGTGATATCATCTTGCGGCACT
rJMFF029K16- TCCCATCTCTTCTTCACGCGGAACATCAGGGCTGATGATGTGATATCATCTTGCGGCACT
rJMFF019P13- TCCCATCTCTTCTTCACGCGGAACATCAGGGCTTATGATGTGATATCATCTTGCGGCACT
____________________________________________________________
consensus TCCCATCTCTTCTTCACGCGGAACATCAGGGCTGATGATGTGATATCATCTTGCGGCACT
. : . : . : . : . : . :
rJMFF049D20- TGAAGCATGAATTGGACTTTCATCTTCATTGGGGCTGTCTTTGCTGCACCGCCTTCGTCT
rJMFF012J09- TGAAGCATGAATTGGACTTTCATCTTCATTGGGGCTGTCTTTGCTGCACCGCCTTCGTCT
rJMFF029K16- TGAAGCATGAATTGGACTTTCATCTTCATTGGGGCTGTCTTTGCTGCACCGCCTTCGTCT
rJMFF019P13- TGAAGCATGAATTGGACTTTCATCTTCATTGGGGCTGTCTTTGCTGCACCGCCTTCGTCT
____________________________________________________________
consensus TGAAGCATGAATTGGACTTTCATCTTCATTGGGGCTGTCTTTGCTGCACCGCCTTCGTCT
. : . : . : . : . : . :
rJMFF049D20- CCAACCCACAGAGATGCCCATCCAAGTCGCACCTCTGAATCATAACCTGCTTTAAATTTG
rJMFF012J09- CCAACCCACAGAGATGCCCATCCAAGTCGCACCTCTGAATCATAACCTGCTTTAAATTTG
rJMFF029K16- CCAACCCACAGAGATGCCCATCCAAGTCGCACCTCTGAATCATAACCTGCTTTAAATTTG
rJMFF019P13- CCAACCCACAGAGATGCCCATCCAAGTCGCACCTCTGAATCATAACCTGCTTTAAATTTG
____________________________________________________________
consensus CCAACCCACAGAGATGCCCATCCAAGTCGCACCTCTGAATCATAACCTGCTTTAAATTTG
. : . : . : . : . : . :
rJMFF049D20- TAGTCTTTGCCAGCTGTGTGTTTGTACACAGCACTCCAGTAGTTTGAATCAAAATTATAC
rJMFF012J09- TAGTCTTTGCCAGCTGTGTGTTTGTACACAGCACTCCAGTAGTTTGAATCAAAATTATAC
rJMFF029K16- TAGTCTTTGCCAGCTGTGTGTTTGTACACAGCACTCCAGTAGTTTGAATCAAAATTATAC
rJMFF019P13- TAGTCTTTGCCAGCTGTGTGTTTGTACACAGCACTCCAGTAGTTTGAATCAAAATTATAC
____________________________________________________________
consensus TAGTCTTTGCCAGCTGTGTGTTTGTACACAGCACTCCAGTAGTTTGAATCAAAATTATAC
. : . : . : . : . : . :
rJMFF049D20- CAGTAACTCAACTTGTCCGAAGGACCAAATCGACGCTTGAATGCGAATGATACTGCATTT
rJMFF012J09- CAGTAACTCAACTTGTCCGAAGGACCAAATCGACGCTTGAATGCGAATGATACTGCATTT
rJMFF029K16- CAGTAACTCAACTTGTCCGAAGGACCAAATCGACGCTTGAATGCGAATGATACTGCATTT
rJMFF019P13- CAGTAACTCAACTTGTCCGAAGGACCAAATCGACGCTTGAATGCGAATGATACTGCATTT
____________________________________________________________
consensus CAGTAACTCAACTTGTCCGAAGGACCAAATCGACGCTTGAATGCGAATGATACTGCATTT
. : . : . : . : . : . :
rJMFF049D20- GAAGGCAAGGA
rJMFF012J09- GAAGGCAAGGAAATACTAGGAATAAAAGCCACTTGCTCATCCTTGAAGCAGTATCTTAAA
rJMFF029K16- GAAGGCAAGGAAATACTAGGAATAAAAGCCACTTGCTCATCCTTGAAGCAGTATCTTAAA
rJMFF019P13- GAAGGCAAGGAAATACTAGGAATAAAAG-CACTTGCTCATCCTTGAAGCAGTATCTTAAA
____________________________________________________________
consensus GAAGGCAAGGAAATACTAGGAATAAAAGCCACTTGCTCATCCTTGAAGCAGTATCTTAAA
. : . : . : . : . : . :
rJMFF012J09- TTCAAATCTTCATCCTTGAATCGAGCACTGCAAATTCCATTCAAAATATGACCTTTGAGG
rJMFF029K16- TTCAAATCTTCATCCTTGAATCGAGCACTGCAAATTCCATTCAAAATATGACCTTTGAGG
rJMFF019P13- TTCAAATCTTCATCCTTGAATCGAGCACTGCAAATTCCATTCAAAATATGACCTTTGAGG
____________________________________________________________
consensus TTCAAATCTTCATCCTTGAATCGAGCACTGCAAATTCCATTCAAAATATGACCTTTGAGG
. : . : . : . : . : . :
rJMFF012J09- ATTCCATTTATGGAAAACACTTTCTTTACATCCTCTTCCTCCTCCTCTTTCTGCTCTAGT
rJMFF029K16- ATTCCATTTATGGAAAACACTTTCTTTACATCCTCATCCTCCTCCTCTTTCTGCTCTAGT
rJMFF019P13- ATTCCATTTATGGAAAACACTTTCTTTACATCCTCTTCCTCCTCCTCTTTCTGCTCTAGT
JMFF049D20+ CCTCCTCTTTCTGCTCTAGT
JMSF021G07+ CCTCCTCTTTCTGCTCTAGT
____________________________________________________________
consensus ATTCCATTTATGGAAAACACTTTCTTTACATCCTCTTCCTCCTCCTCTTTCTGCTCTAGT
. : . : . : . : . : . :
rJMFF012J09- G
rJMFF029K16- G
rJMFF019P13- GAAATTTCACCATAGGGAAACTTAAAGGATGCTCTTGGCATGCCAATGGCTGG
JMFF049D20+ GAAATTTCACCATAGGGAAACTTAAAGGATGCTCTTGGCATGCCAATGGCTGGAACACTA
JMFF019P13+ CACCATAGGGAAACTTAAAGGATGCTCTTGGCATGCCAATGGCTGGAACACTA
JMFF029K16+ AACTTAAAGGATGCTCTTGGCATGCCAATGGCTGGAACACTA
JMSF021G07+ GAAATTTCACCATAGGGAAACTTAAAGGATGCTCTTGGCATGCCAATGGCTGGAACACTA
____________________________________________________________
consensus GAAATTTCACCATAGGGAAACTTAAAGGATGCTCTTGGCATGCCAATGGCTGGAACACTA
. : . : . : . : . : . :
JMFF049D20+ GATGACAATTCAAACTTGTAGGCAGGGCCAGCAAGGTCTGCAACCATTGCCACCTGTCCT
JMFF019P13+ GATGACAATTCAAACTTGTAGGCAGGGCCAGCAAGGTCTGCAACCATTGCCACCTGTCCT
JMFF029K16+ GATGACAATTCAAACTTGTAGGCAGGGCCAGCAAGGTCTGCAACCATTGCCACCTGTCCT
JMFF012J09+ T
JMSF021G07+ GATGACAATTCAAACTTGTAGGCAGGGCCAGCAAGGTCTGCAACCATTGCCACCTGTCCT
____________________________________________________________
consensus GATGACAATTCAAACTTGTAGGCAGGGCCAGCAAGGTCTGCAACCATTGCCACCTGTCCT
. : . : . : . : . : . :
JMFF049D20+ TGTTGAGACTTGACATCGTGAACTGCCTCGAGTTGCAGGCCGGGAGTGATATCGAAATTA
JMFF019P13+ TGTTGAGACTTGACATCGTGAACTGCCTCGAGTTGCAGGCCGGGAGTGATATCGAAATTA
JMFF029K16+ TGTTGAGACTTGACATCGTGAACTGCCTCGAGTTGCAGGCCGGGAGTGATATCGAAATTA
JMFF012J09+ TGTTGAGACTTGACATCGTGAACTGCCTCGAGTTGCAGGCCGGGAGTGATATCGAAATTA
JMSF021G07+ TGTTGAGACTTGACATCGTGAACTGCCTCGAGTTGCAGGCCGGGAGTGATATCGAAATTA
____________________________________________________________
consensus TGTTGAGACTTGACATCGTGAACTGCCTCGAGTTGCAGGCCGGGAGTGATATCGAAATTA
. : . : . : . : . : . :
JMFF049D20+ GCCTTAACAATGGCGTTCTGCTCCTCGACGTCGTAGTGTAAGGACAAGTACTTGGAAGTC
JMFF019P13+ GCCTTAACAATGGCGTTCTGCTCCTCGACGTCGTAGTGTAAGGACAAGTACTTGGAAGTC
JMFF029K16+ GCCTTAACAATGGCGTTCTGCTCCTCGACGTCGTAGTGTAAGGACAAGTACTTGGAAGTC
JMFF012J09+ GCCTTAACAATGGCGTTCTGCTCCTCGACGTCGTAGTGTAAGGACAAGTACTTGGAAGTC
JMSF021G07+ GCCTTAACAATGGCGTTCTGCTCCTCGACGTCGTAGTGTAAGGACAAGTACTTGGAAGTC
____________________________________________________________
consensus GCCTTAACAATGGCGTTCTGCTCCTCGACGTCGTAGTGTAAGGACAAGTACTTGGAAGTC
. : . : . : . : . : . :
JMFF049D20+ AAGTCCAGTTGGGGCTCAGAAATCTCTCCCTTGCCGTTATTCTGGAACGACAACTTCACC
JMFF019P13+ AAGTCCAGTTGGGGCTCAGAAATCTCTCCCTTGCCGTTATTCTGGAACGACAACTTCACC
JMFF029K16+ AAGTCCAGTTGGGGCTCAGAAATCTCTCCCTTGCCGTTATTCTGGAACGACAACTTCACC
JMFF012J09+ AAGTCCAGTTGGGGCCCAGAAATCTCTCCCTTGCCGTTATTCTGGAACGACAACTTCACC
JMSF021G07+ AAGTCCAGTTGGGGCTCAGAAATCTCTCCCTTGCCGTTATTCTGGAACGACAACTTCACC
____________________________________________________________
consensus AAGTCCAGTTGGGGCTCAGAAATCTCTCCCTTGCCGTTATTCTGGAACGACAACTTCACC
. : . : . : . : . : . :
JMFF049D20+ TTGGCCAAGCTGTCCAGCAGCCTGCACGAGATTCTGTGCTGGAAAGTAGTGCTGTCACTG
JMFF019P13+ TTGGCCAAGCTGTCCAGCAGCCTGCACGAGATTCTGTGCTGGAAAGTAGTGCTGTCACTG
JMFF029K16+ TTGGCCAAGCTGTCCAGCAGCCTGCACGAGATTCTGTGCTGGAAAGTAGTGCTGTCACTG
JMFF012J09+ TTGGCCAAGCTGTCCAGCAGCCTGCACGAGATTCTGTGCTGGAAAGTAGTGCTGTCACTG
JMSF021G07+ TTGGCCAAGCTGTCCAGCAGCCTGCACGAGATTCTGTGCTGGAAAGTAGTGCTGTCACTG
____________________________________________________________
consensus TTGGCCAAGCTGTCCAGCAGCCTGCACGAGATTCTGTGCTGGAAAGTAGTGCTGTCACTG
. : . : . : . : . : . :
JMFF049D20+ TCGTACTCAGACGTCACCCTTATCTTCGGCCGGTGGCTCTGCAGCCACAGAAGCGGACCG
JMFF019P13+ TCGTACTCAGACGTCACCCTTATCTTCGGCCGGTGGCTCTGCAGCCACAGAAGCGGACCG
JMFF029K16+ TCGTACTCAGACGTCACCCTTATCTTCGGCCGGTGGCTCTGCAGCCACAGAAGCGGACCG
JMFF012J09+ TCGTACTCAGACGTCACCCTTATCTTCGGCCGGTGGCTCTGCAGCCACAGAAGCGGACCG
JMSF021G07+ TCGTACTCAGACGTCACCCTTATCTTCGGCCGGTGGCTCTGCAGCCACAGAAGCGGACCG
____________________________________________________________
consensus TCGTACTCAGACGTCACCCTTATCTTCGGCCGGTGGCTCTGCAGCCACAGAAGCGGACCG
. : . : . : . : . : . :
JMFF049D20+ AATCCTCCTCTGCCGCCGCCGTTGGGAGGTGGAAGCTCAGATTTGACCGCAGTTGGTGGC
JMFF019P13+ AATCCTCCTCTGCCGCCGCCGTTGGGAGGTGGAAGCTCAGATTTGACCGCAGTTGGTGGC
JMFF029K16+ AATCCTCCTCTGCCGCCGCCGTTGGGAGGTGGAAGCTCAGATTTGACCGCAGTTGGTGGC
JMFF012J09+ AATCCTCCTCTGCCGCCGCCGTTGGGAGGTGGAAGCTCAGATTTGACCGCAGTTGGTGGC
JMSF021G07+ AATCCTCCTCTGCCGCCGCCGTTGGGAGGTGGAAGCTCAGATTTGACCGCAGTTGGTGGC
____________________________________________________________
consensus AATCCTCCTCTGCCGCCGCCGTTGGGAGGTGGAAGCTCAGATTTGACCGCAGTTGGTGGC
. : . : . : . : . : . :
JMFF049D20+ GGTGCCGGCGCCGGTGCTTTGAGAACAAACAAGGCGGAGTTAGGGTTTTGCGGCGGCGGC
JMFF019P13+ GGTGCCGGCGCCGGTGCTTTGAGAACAAACAAGGCGGAGTTAGGGTTTTGCGGCGGCGGC
JMFF029K16+ GGTGCCGGCGCCGGTGCTTTGAGAACAAACAAGGCGGAGTTAGGGTTTTGCGGCGGCGGC
JMFF012J09+ GGTGCCGGCGCCGGTGCTTTGAGAACAAACAAGGCGGAGTTAGGGTTTTGCGGCGGCGGC
JMSF021G07+ GGTGCCGGCGCCGGTGCTTTGAGAACAAACAAGGCGGAGTTAGGGTTTTGCGGCGGCGGC
____________________________________________________________
consensus GGTGCCGGCGCCGGTGCTTTGAGAACAAACAAGGCGGAGTTAGGGTTTTGCGGCGGCGGC
. : . : . : . : . : . :
JMFF049D20+ GCCGGGGAATGCAATTCCGCTTCCGGCATAGCTCCTTTTGGTGGTTGTCGATTTCGGAG
JMFF019P13+ GCCGGGGAATGCAATTCCGCTTCCGGCATAGCTCCTTTTGGTGGTTGTCGATTTCGGAG
JMFF029K16+ GCCGGGGAATGCAATTCCGCTTCCGGCATAGCTCCTTTTGGTGGTTGTCGATTTTGGAG
JMFF012J09+ GCCGGGGAATGCAATTCCGCTTCCGGCATAGCTCCTTTTGGTGGTTGTCGAT
JMSF021G07+ GCCGGGGAATGCAATTCCGCTTCCGGCATAGCTCCTTTTGGTGGTTGTCGATTTCGGAGC
____________________________________________________________
consensus GCCGGGGAATGCAATTCCGCTTCCGGCATAGCTCCTTTTGGTGGTTGTCGATTTCGGAGC