Contig 005060:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS110B03Sequence611005060 (3)ref|XP_009592744.1|6e-67PREDICTED: polyribonucleotide nucleotidyltransferase 1, chloroplastic-like [Nic
JMSF008A14Sequence265005060 (3)ref|XP_009592744.1|7e-51PREDICTED: polyribonucleotide nucleotidyltransferase 1, chloroplastic-like [Nic765009957 (2)ref|XP_011069965.1|4e-11PREDICTED: probable polyribonucleotide nucleotidyltransferase 1, chloroplastic
JMSF020B23Sequence595005060 (3)ref|XP_009759527.1|3e-38PREDICTED: probable polyribonucleotide nucleotidyltransferase 1, chloroplastic 744009957 (2)ref|XP_011069965.1|1e-07PREDICTED: probable polyribonucleotide nucleotidyltransferase 1, chloroplastic

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF008A14+ CCATCATAACTTA
                      ____________________________________________________________
consensus CCATCATAACTTA
 
. : . : . : . : . : . :
JMSF008A14+ ATACCCANGAAAGTACTTGANCTTCATGGTAGAATCCCTTAAGCATAGTTGGCCGTAGAG
JMFS110B03+ GAAAGTACTTGAACTTCATGGTAGAATCCCTTAAGCATAGTTGGCCGTAGAG
                      ____________________________________________________________
consensus ATACCCANGAAAGTACTTGAACTTCATGGTAGAATCCCTTAAGCATAGTTGGCCGTAGAG
 
. : . : . : . : . : . :
JMSF008A14+ GTCGATCTATCAACCTACAAATGTGAACCTCGTGATCCTTTGCTCTCCCTTCTCGTTTGA
JMFS110B03+ GTCGATCTATCAACCTACAAATGTGAACCTCGTGATCCTTTGCTCTCCCTTCTCGTTTGA
                      ____________________________________________________________
consensus GTCGATCTATCAACCTACAAATGTGAACCTCGTGATCCTTTGCTCTCCCTTCTCGTTTGA
 
. : . : . : . : . : . :
JMSF008A14+ AAAATCCTCCACTGGTGCGACCAGCTGCCGAAAATCTTTCTTGATATTGAACAGATAGAG
JMFS110B03+ AAAATCCTCCACTGGTGCGACCAGCTGCCGAAAATCTTTCTTGATATTGAACAGATAGAG
JMSF020B23+ CCTCCACTGGTGCGACCAGCTGCCGAAAATCTTTCTTGATATTGAACAGATAGAG
                      ____________________________________________________________
consensus AAAATCCTCCACTGGTGCGACCAGCTGCCGAAAATCTTTCTTGATATTGAACAGATAGAG
 
. : . : . : . : . : . :
JMSF008A14+ GGAAGAAATCAGAAGGCTCGCTCGGATCATCAGCTAAGCATACAGTTGTATAGATAATAG
JMFS110B03+ GGAAGAAATCAGAAGGCTCGCTCGGATCATCAGCTAAGCATACAGTTGTATAGATAATAG
JMSF020B23+ GGAAGAAATCAGAAGGCTCGCTCGGATCATCAGCTAAGCATACAGTTGTATAGATAATAG
                      ____________________________________________________________
consensus GGAAGAAATCAGAAGGCTCGCTCGGATCATCAGCTAAGCATACAGTTGTATAGATAATAG
 
. : . : . : . : . : . :
JMSF008A14+ TTTCCCCATCC
JMFS110B03+ TTTCCCCATCCGTTACAGTAACTGCGCCACTAGCTTGCCTGCCGACATGACCTGTCTCAA
JMSF020B23+ TTTCCCCATCCGTTACAGTAACTGCGCCACTAGCTTGCCTGCCGACATGACCTGTCTCAA
                      ____________________________________________________________
consensus TTTCCCCATCCGTTACAGTAACTGCGCCACTAGCTTGCCTGCCGACATGACCTGTCTCAA
 
. : . : . : . : . : . :
JMFS110B03+ CCGTTATATAACGGTCTCCAACAGGAATCCTGACTGAATAGGGGCGAGGCAAGGAGGCAG
JMSF020B23+ CCGTTATATAACGGTCTCCAACAGGAATCCTGACTGAATAGGGGCGAGGCAAGGAGGCAG
                      ____________________________________________________________
consensus CCGTTATATAACGGTCTCCAACAGGAATCCTGACTGAATAGGGGCGAGGCAAGGAGGCAG
 
. : . : . : . : . : . :
JMFS110B03+ GAGAGGCAGAAAACGACGAAGACGACGCTGCGTCCGAAGTAGCTCGAACAGCCAACTGAT
JMSF020B23+ GAGAGGCAGAAAACGACGAAGACGACGCTGCGTCCGAAGTAGCTCGAACAGCCAACTGAT
                      ____________________________________________________________
consensus GAGAGGCAGAAAACGACGAAGACGACGCTGCGTCCGAAGTAGCTCGAACAGCCAACTGAT
 
. : . : . : . : . : . :
JMFS110B03+ AACATAGTTTGCCGCTCTTTCTTCTTCTAGTCGGAGCTCTTCTTCTAGCAATGGAGGAAG
JMSF020B23+ AACATAGTTTGCCGCTCTTTCTTCTTCTAGTCGGAGCTCTTCTTCTAGCAATGGAGGAAG
                      ____________________________________________________________
consensus AACATAGTTTGCCGCTCTTTCTTCTTCTAGTCGGAGCTCTTCTTCTAGCAATGGAGGAAG
 
. : . : . : . : . : . :
JMFS110B03+ GTGTGAGTTGCAGAGGAAGGAATCTGTAGCGAGCTGTGGTAGGCGTGAAGTGCAGAGGCC
JMSF020B23+ GTGTGAGTTGCAGAGGAAGGAATCTGTAGCGAGCTGTGGTAGGCGTGAAGTGCAGAGGCC
                      ____________________________________________________________
consensus GTGTGAGTTGCAGAGGAAGGAATCTGTAGCGAGCTGTGGTAGGCGTGAAGTGCAGAGGCC
 
. : . : . : . : . : . :
JMFS110B03+ GGCCATGGAAGGTAGGGTTTGCCAACATTTCTTCCACTGAAGGAGAGTGACAGTAGTGAG
JMSF020B23+ GGCCATGGAAGGTAGGGTTTGCCAACATTTCTTCCACTGAAGGAGAGTGACAGTAGTGAG
                      ____________________________________________________________
consensus GGCCATGGAAGGTAGGGTTTGCCAACATTTCTTCCACTGAAGGAGAGTGACAGTAGTGAG
 
. : . : . : . : . : . :
JMFS110B03+ AGCGTGAGGAATGGAACT
JMSF020B23+ AGCGTGAGGAATGGAACTTATCCGTTTCGTTACAGTGTCTGGAACGGTGGATAGCAAAGA
                      ____________________________________________________________
consensus AGCGTGAGGAATGGAACTTATCCGTTTCGTTACAGTGTCTGGAACGGTGGATAGCAAAGA
 
. : . : . : . : . : . :
JMSF020B23+ AATCTGTATCGTGTTTATATATAGTCGCTAAAAGGCCGCCAGTTCAAGTGAGGCGCGACC
                      ____________________________________________________________
consensus AATCTGTATCGTGTTTATATATAGTCGCTAAAAGGCCGCCAGTTCAAGTGAGGCGCGACC