Contig 005033:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF016G01Sequence216005033 (3)747019279ref|XP_009795831.1|6e-94PREDICTED: serine carboxypeptidase-like 18 isoform X2 [Nicotiana sylvestris]
JMSF021H20Sequence696005033 (3)ref|XP_009795830.1|2e-86PREDICTED: serine carboxypeptidase-like 18 isoform X1 [Nicotiana sylvestris]775001498 (2)ref|XP_009795831.1|1e-80PREDICTED: serine carboxypeptidase-like 18 isoform X2 [Nicotiana sylvestris]
JMSF050K11Sequence694005033 (3)ref|XP_009795830.1|7e-87PREDICTED: serine carboxypeptidase-like 18 isoform X1 [Nicotiana sylvestris]775001498 (2)ref|XP_009795831.1|7e-80PREDICTED: serine carboxypeptidase-like 18 isoform X2 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF050K11+                                                               GATGAGCA
JMSF021H20+                                                             TCGATGAGCA
                      ____________________________________________________________
consensus                                                               TCGATGAGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF050K11+           TACATGACTCTATTATTGTNGTCTGCATATTGGTCGGTCACTGGATTGCCTTCCACATAT
JMSF021H20+           TACATGACTCTATTANTGTTGTCTGCATATTGGTCGGTCACTGGATTGCCTTCCACATAT
                      ____________________________________________________________
consensus             TACATGACTCTATTATTGTTGTCTGCATATTGGTCGGTCACTGGATTGCCTTCCACATAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF050K11+           CCTTTCAAGTTTAGATGTGGCTCAATTCCAGATTCTAAACCATCATATATTTTGTGAACA
JMSF021H20+           CCTTTCAAGTTTAGATGTGGCTCAATTCCAGATTCTAAACCATCATATATTTTGTGAACA
                      ____________________________________________________________
consensus             CCTTTCAAGTTTAGATGTGGCTCAATTCCAGATTCTAAACCATCATATATTTTGTGAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF050K11+           ACCAGCGGAATAATGATTCCAGCATAGGAATCACCTGCAATGTACAATGAGTTGCTAAGG
JMSF021H20+           ACCAGCGGAATAATGATTCCAGCATAGGAATCACCTGCAATGTACAATGAGTTGCTAAGG
                      ____________________________________________________________
consensus             ACCAGCGGAATAATGATTCCAGCATAGGAATCACCTGCAATGTACAATGAGTTGCTAAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF050K11+           AATTTCGGGTGGTCCAGGAGCCACCCTCTGAGGAAACTATAAGCAAGTTGTGCGGATAGT
JMSF021H20+           AATTTCGGGTGGTCCAGGAGCCACCCTCTGAGGAAACTATAAGCAAGTTGTGCGGATAGT
                      ____________________________________________________________
consensus             AATTTCGGGTGGTCCAGGAGCCACCCTCTGAGGAAACTATAAGCAAGTTGTGCGGATAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF050K11+           GTATCATTACACATGTAAGCTTCCCATGTTTTGTCATAGGAGAATCCTGTTCCAACTGGT
JMSF021H20+           GTATCATTACACATGTAAGCTTCCCATGTTTTGTCATAGGAGAATCCTGTTCCAACTGGT
                      ____________________________________________________________
consensus             GTATCATTACACATGTAAGCTTCCCATGTTTTGTCATAGGAGAATCCTGTTCCAACTGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF050K11+           TGGTCCAAAAATATAATGTTGGCCACCTTGGTCCACGCATACTGGTTCAACTCCAAAGTT
JMSF021H20+           TGGTCCAAAAATATAATGTTGGCCACCTTGGTCCACGCATACTGGTTCAACTCCAAAGTT
                      ____________________________________________________________
consensus             TGGTCCAAAAATATAATGTTGGCCACCTTGGTCCACGCATACTGGTTCAACTCCAAAGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF050K11+           GGGATGTCTCCAGTGGAATTTGCATAATTAATTCTCAAAGGACCTATCTCATAGAGGAGG
JMSF021H20+           GGGATGTCTCCAGTGGAATTTGCATAATTAATTCTCAAAGGACCTATCTCATAGAGGAGG
                      ____________________________________________________________
consensus             GGGATGTCTCCAGTGGAATTTGCATAATTAATTCTCAAAGGACCTATCTCATAGAGGAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF050K11+           CTAGAGAGACCAGAGCAGCCTGGGCCTCCAGCGAGCCAGAGAAAGAGCGGGTCACTTTCT
JMSF021H20+           CTAGAGAGACCAGAGCAGCCTGGGCCTCCAGCGAGCCAGAGAAAGAGCGGGTCACTTTCT
                      ____________________________________________________________
consensus             CTAGAGAGACCAGAGCAGCCTGGGCCTCCAGCGAGCCAGAGAAAGAGCGGGTCACTTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF050K11+           GGGCTATTCTCAGATTCAATGAAGTAGTAAAACAGTTGAACTTGTTGAAATTCTCCCACA
JMSF021H20+           GGGCTATTCTCAGATTCAATGAAGTAGTAAAACAGTTGAACTTGTTGAAATTCTCCCACA
                      ____________________________________________________________
consensus             GGGCTATTCTCAGATTCAATGAAGTAGTAAAACAGTTGAACTTGTTGAAATTCTCCCACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF050K11+           CCTATGTAACCAGTTTCGAGCTTGAATGGAAGTTTTCCTGGGAATCCAGGTAAAGTGTCA
JMSF021H20+           CCTATGTAACCAGTTTCGAGCTTGAATGGAAGTTTTCCTGGGAATCCAGGTAAAGTGTCA
JMSF016G01+                                   AATGGAAGTTTTCCTGGGAAACCAGGTAAAGTGTCA
                      ____________________________________________________________
consensus             CCTATGTAACCAGTTTCGAGCTTGAATGGAAGTTTTCCTGGGAATCCAGGTAAAGTGTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF050K11+           ACCACTGAATGTGAAAATGATCGAGCCAAAAACAG                         
JMSF021H20+           ACCACTGAATGTGAAAATGATCGAGCCAAAAACAGGAGTAGCAACAGAAGGATTTCCATT
JMSF016G01+           ACCACTGTATGTGAAAACGTTGTAGCCGAAAATAGGAGTAGCAATACAAGGATTTTCAAT
                      ____________________________________________________________
consensus             ACCACTGAATGTGAAAATGATCGAGCCAAAAACAGGAGTAGCAATAGAAGGATTTTCATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF021H20+           GGTGAGGCCATGA                                               
JMSF016G01+           GTTGAGGCCATGAGAGGGCTTCTCCAGCCTACACTGCTACAAGTCTGCTACTATACTCTA
                      ____________________________________________________________
consensus             GTTGAGGCCATGAGAGGGCTTCTCCAGCCTACACTGCTACAAGTCTGCTACTATACTCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF016G01+           TTATCTTGAATGCATATGGCTGGTAGGTATGGTGTGTATAGTGTTTAGTTCTTACTTTCA
                      ____________________________________________________________
consensus             TTATCTTGAATGCATATGGCTGGTAGGTATGGTGTGTATAGTGTTTAGTTCTTACTTTCA