Contig 005031:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005E17Sequence541005031 (8)ref|XP_006444361.1|3e-47hypothetical protein CICLE_v10022870mg [Citrus clementina] ref|XP_006479970.1| P
JMFF027B03Sequence586005031 (8)ref|XP_006444361.1|5e-47hypothetical protein CICLE_v10022870mg [Citrus clementina] ref|XP_006479970.1| P555005031 (8)ref|XP_006444361.1|4e-47hypothetical protein CICLE_v10022870mg [Citrus clementina] ref|XP_006479970.1| P
JMFN042L20Sequence390005031 (8)ref|XP_006444361.1|4e-46hypothetical protein CICLE_v10022870mg [Citrus clementina] ref|XP_006479970.1| P
JMSF016F02Sequence286005031 (8)ref|XP_009597499.1|3e-28PREDICTED: 60S ribosomal protein L22-3-like [Nicotiana tomentosiformis]614005031 (8)ref|XP_006444361.1|6e-47hypothetical protein CICLE_v10022870mg [Citrus clementina] ref|XP_006479970.1| P
JMSF017F02Sequence286005031 (8)ref|XP_009597499.1|3e-28PREDICTED: 60S ribosomal protein L22-3-like [Nicotiana tomentosiformis]565005031 (8)ref|XP_006444361.1|3e-47hypothetical protein CICLE_v10022870mg [Citrus clementina] ref|XP_006479970.1| P

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF005E17+ TTTACAGGTTCACAAAGTA
rJMFF027B03- AATCTCATTTTACAGGTTCACAAAGTA
rJMSF017F02- TCTCATTTTNCAGGTTNACAAAGTA
                      ____________________________________________________________
consensus AATCTCATTTTACAGGTTCACAAAGTA
 
. : . : . : . : . : . :
JMFF005E17+ AAAATTGCAAAAGCCATTCAAAACAGGGTATATAACGACAAGAGCAACACACTGCAAATC
rJMFF027B03- AAAATTGCAAAAGCCATTCAAAACAGGGTATATAACGACAAGAGCAACACACTGCAAATC
rJMSF017F02- AAAATTGCANNAGCCATTCAAAACAGGGTATATAACGACAAGAGCAACACACTGCAAATC
                      ____________________________________________________________
consensus AAAATTGCAAAAGCCATTCAAAACAGGGTATATAACGACAAGAGCAACACACTGCAAATC
 
. : . : . : . : . : . :
JMFF005E17+ CAAGACATGGCGAAAAGGACGTATTCACCCCCGCTTAATCTTCATCCTCGGCATCATTTT
JMFN042L20+ TATTCCCCCCCGCTTAATCTTCATCCTCGACATCATGTT
rJMFF027B03- CAAGACATGGCGAAAAGGACGTATTCACCCCCGCTTAATCTTCATCCTCGGCATCATTTT
JMFF027B03+ CTTAATCTTCATCCTCGGCATCATTTT
rJMSF017F02- CAAGACATGGCGAAAAGGACGCATTCACCCCCGCTTAATCTTCATCCTCGGCATCATTTT
rJMSF016F02- CTTAATCTTCATCCTCGGCATCATTTT
                      ____________________________________________________________
consensus CAAGACATGGCGAAAAGGACGTATTCACCCCCGCTTAATCTTCATCCTCGGCATCATTTT
 
. : . : . : . : . : . :
JMFF005E17+ CAGCAATGTTGAAGTACCTCAATTCGTAGACACTTCTATCCTTGTTTGAAGAAATGACGC
JMFN042L20+ CAGCAATGTGGAAGTACCTCAATTCGTACGCACTTCTATCCTGGGTTGAAGAAATGACGC
rJMFF027B03- CAGCAATGTTGAAGTACCTCAATTCGTAGACACTTCTATCCTTGTTTGAAGAAATGACGC
JMFF027B03+ CAGCAATGTTGAAGTACCTCAATTCGTAGACACTTCTATCCTTGTTTGAAGAAATGACGC
rJMSF017F02- CAGCAATGTTGAAGTACCTCAATTCGTAGACACTTCTATCCTTGTTTGAAGAAATGACGC
rJMSF016F02- CAGCAATGTTGAAGTACCTCAATTCGTAGACACTTCTATCCTTGTTTGAAGAAATGACGC
                      ____________________________________________________________
consensus CAGCAATGTTGAAGTACCTCAATTCGTAGACACTTCTATCCTTGTTTGAAGAAATGACGC
 
. : . : . : . : . : . :
JMFF005E17+ GGAGCCAGTCACGGACATTGTTCTTCTTTAGATACTTCTTTGTCAAGTATTTCAAATATC
JMFN042L20+ GGAACCAGTCACGGGCATTGTTCTTCTTTAGATACTTCTGTGTCAAGTATTTCAAATATC
rJMFF027B03- GGAGCCAGTCACGGACATTGTTCTTCTTTAGATACTTCTTTGTCAAGTATTTCAAATATC
JMFF027B03+ GGAGCCAGTCACGGACATTGTTCTTCTTTAGATACTTCTTTGTCAAGTATTTCAAATATC
rJMSF017F02- GGAGCCAGTCACGGACATTGTTCTTCTTTAGATACTTCTTTGTCAAGTATTTCAAATATC
rJMSF016F02- GGAGCCAGTCACGGACATTGTTCTTCTTTAGATACTTCTTTGTCAAGTATTTCAAATATC
                      ____________________________________________________________
consensus GGAGCCAGTCACGGACATTGTTCTTCTTTAGATACTTCTTTGTCAAGTATTTCAAATATC
 
. : . : . : . : . : . :
JMFF005E17+ GTTTGGAGAAGTTGGAGTCGGAAGTGACGGTGATCTTGGTCTTGTCACGGGTGACGGTGA
JMFN042L20+ GTTTGGAGAAGTTGGAGTCGGAAGTGGCGGTGATCTTGGTCTTGTCACGGGTGACGGTGA
rJMFF027B03- GTTTGGAGAAGTTGGAGTCGGAAGTGACGGTGATCTTGGTCTTGTCACGGGTGACGGTGA
JMFF027B03+ GTTTGGAGAAGTTGGAGTCGGAAGTGACGGTGATCTTGGTCTTGTCACGGGTGACGGTGA
rJMSF017F02- GTTTGGAGAAGTTGGAGTCGGAAGTGACGGTGATCTTGGTCTTGTCACGGGTGACGGTGA
rJMSF016F02- GTTTGGAGAAGTTGGAGTCGGAAGTGACGGTGATCTTGGTCTTGTCACGGGTGACGGTGA
JMSF017F02+ GAGTCGGAAGTGACGGTGATCTTGGTCTTGTCACGGGTGACGGTGA
JMSF016F02+ GAGTCGGAAGTGACGGTGATCTTGGTCTTGTCACGGGTGACGGTGA
                      ____________________________________________________________
consensus GTTTGGAGAAGTTGGAGTCGGAAGTGACGGTGATCTTGGTCTTGTCACGGGTGACGGTGA
 
. : . : . : . : . : . :
JMFF005E17+ CGGAGTCGCCGAGGGCTCCGGCCTTGCCGCCGACCTTAATGCGCTCCTGGAGGAACTTCT
JMFN042L20+ CGGAGTCGCCGAGGGCTCGGGCCTTGCCGCCGACCTTAATGCGCTCCTGGAGGAACTTCT
rJMFF027B03- CGGAGTCGCCGAGGGCTCCGGCCTTGCCGCCGACCTTAATGCGCTCCTGGAGGAACTTCT
JMFF027B03+ CGGAGTCGCCGAGGGCTCCGGCCTTGCCGCCGACCTTAATGCGCTCCTGGAGGAACTTCT
rJMSF017F02- CGGAGTCGCCGAGGGCTCCGGCCTTGCCGCCGACCTTAATGCGCTCCTGGAGGAACTTCT
rJMSF016F02- CGGAGTCGCCGAGGGCTCCGGCCTTGCCGCCGACCTTAATGCGCTCCTGGAGGAACTTCT
JMSF017F02+ CGGAGTCGCCGAGGGCTCCGGCCTTGCCGCCGACCTTAATGCGCTCCTGGAGGAACTTCT
JMSF016F02+ CGGAGTCGCCGAGGGCTCCGGCCTTGCCGCCGACCTTAATGCGCTCCTGGAGGAACTTCT
                      ____________________________________________________________
consensus CGGAGTCGCCGAGGGCTCCGGCCTTGCCGCCGACCTTAATGCGCTCCTGGAGGAACTTCT
 
. : . : . : . : . : . :
JMFF005E17+ CCAGTGAGGCAATGTCCATAATCTTATCGTCCACAGGTTTCGAGCAGTCGATCACAAACG
JMFN042L20+ CCAGTGAGGCAATGTCCATAATCTTATCGTCCACAGGTTTCGAGCAGTCGATCACAAACG
rJMFF027B03- CCAGTGAGGCAATGTCCATAATCTTATCGTCCACAGGTTTCGAGCAGTCGATCACAAACG
JMFF027B03+ CCAGTGAGGCAATGTCCATAATCTTATCGTCCACAGGTTTCGAGCAGTCGATCACAAACG
rJMSF017F02- CCAGTGAGGCAATGTCCATAATCTTATCGTCCACAGGTTTCGAGCAGTCGATCACAAACG
rJMSF016F02- CCAGTGAGGCAATGTCCATAATCTTATCGTCCACAGGTTTCGAGCAGTCGATCACAAACG
JMSF017F02+ CCAGTGAGGCAATGTCCATAATCTTATCGTCCACAGGTTTCGAGCAGTCGATCACAAACG
JMSF016F02+ CCAGTGAGGCAATGTCCATAATCTTATCGTCCACAGGTTTCGAGCAGTCGATCACAAACG
                      ____________________________________________________________
consensus CCAGTGAGGCAATGTCCATAATCTTATCGTCCACAGGTTTCGAGCAGTCGATCACAAACG
 
. : . : . : . : . : . :
JMFF005E17+ TCGCCCCCTTCTTCTTCCCTCCCTTGAGGGCCCCACCTCCGCTGCTTCCTTTGCTCATTC
JMFN042L20+ TCGCCCCCTTCTTCTTCCCTCCCTTGAGGGCCCCACCTCCGCTGCTTCCTT
rJMFF027B03- TCGCCCCCTTCTTCTTCCCTCCCTTGAGGGCCCCACCTCCGCTGCTTCCTTTGCTCATTC
JMFF027B03+ TCGCCCCCTTCTTCTTCCCTCCCTTGAGGGCCCCACCTCCGCTGCTTCCTTTGCTCATTC
rJMSF017F02- TCGCCCCCTTCTTCTTCCCTCCCTTGAGGGCCCCACCTCCGCTGCTTCCTTTGCTCATTC
rJMSF016F02- TCGCCCCCTTCTTCTTCCCTCCCTTGAGGGCCCCACCTCCGCTGCTTCCTTTGCTCATTC
JMSF017F02+ TCGCCCCCTTCTTCTTCCCTCCCTTGAGGGCCCCACCTCCGCTGCTTCCTTTGCTCATTC
JMSF016F02+ TCGCCCCCTTCTTCTTCCCTCCCTTGAGGGCCCCACCTCCGCTGCTTCCTTTGCTCATTC
                      ____________________________________________________________
consensus TCGCCCCCTTCTTCTTCCCTCCCTTGAGGGCCCCACCTCCGCTGCTTCCTTTGCTCATTC
 
. : . : . : . : . : . :
JMFF005E17+ TTCTCTGCTTAGGTTTCCTGAGCGGCTGAAAGGAGTATATTA
rJMFF027B03- TTCTCTGCTTAGGTTTCCTGAGCGGCTGAAAGGAGTATATTAGGATAT
JMFF027B03+ TTCTCTGCTTAGGTTTCCTGAGCGGCTGAAAGGAGTATATTAGGATAT
rJMSF017F02- TTCTCTGCTTAGGTTTCCTGAGCGGCTGAAAGGAGTATATTAGGATATGAGAAGGAGATC
rJMSF016F02- TTCTCTGCTTAGGTTTCCTGAGCGGCTGAAAGGAGTATATTAGGATATGAGAAGGAGATC
JMSF017F02+ TTCTCTGCTTAGGTTTCCTGAGCGGCTGAAAGGAGTATATTAGGATATGAGAAGGAGATC
JMSF016F02+ TTCTCTGCTTAGGTTTCCTGAGCGGCTGAAAGGAGTATATTAGGATATGAGAAGGAGATC
                      ____________________________________________________________
consensus TTCTCTGCTTAGGTTTCCTGAGCGGCTGAAAGGAGTATATTAGGATATGAGAAGGAGATC