clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF005E17 | Sequence | 541 | 005031 (8) | ref|XP_006444361.1| | 3e-47 | hypothetical protein CICLE_v10022870mg [Citrus clementina] ref|XP_006479970.1| P | |||||
JMFF027B03 | Sequence | 586 | 005031 (8) | ref|XP_006444361.1| | 5e-47 | hypothetical protein CICLE_v10022870mg [Citrus clementina] ref|XP_006479970.1| P | 555 | 005031 (8) | ref|XP_006444361.1| | 4e-47 | hypothetical protein CICLE_v10022870mg [Citrus clementina] ref|XP_006479970.1| P |
JMFN042L20 | Sequence | 390 | 005031 (8) | ref|XP_006444361.1| | 4e-46 | hypothetical protein CICLE_v10022870mg [Citrus clementina] ref|XP_006479970.1| P | |||||
JMSF016F02 | Sequence | 286 | 005031 (8) | ref|XP_009597499.1| | 3e-28 | PREDICTED: 60S ribosomal protein L22-3-like [Nicotiana tomentosiformis] | 614 | 005031 (8) | ref|XP_006444361.1| | 6e-47 | hypothetical protein CICLE_v10022870mg [Citrus clementina] ref|XP_006479970.1| P |
JMSF017F02 | Sequence | 286 | 005031 (8) | ref|XP_009597499.1| | 3e-28 | PREDICTED: 60S ribosomal protein L22-3-like [Nicotiana tomentosiformis] | 565 | 005031 (8) | ref|XP_006444361.1| | 3e-47 | hypothetical protein CICLE_v10022870mg [Citrus clementina] ref|XP_006479970.1| P |
This contig is upended
. : . : . : . : . : . :
JMFF005E17+ TTTACAGGTTCACAAAGTA
rJMFF027B03- AATCTCATTTTACAGGTTCACAAAGTA
rJMSF017F02- TCTCATTTTNCAGGTTNACAAAGTA
____________________________________________________________
consensus AATCTCATTTTACAGGTTCACAAAGTA
. : . : . : . : . : . :
JMFF005E17+ AAAATTGCAAAAGCCATTCAAAACAGGGTATATAACGACAAGAGCAACACACTGCAAATC
rJMFF027B03- AAAATTGCAAAAGCCATTCAAAACAGGGTATATAACGACAAGAGCAACACACTGCAAATC
rJMSF017F02- AAAATTGCANNAGCCATTCAAAACAGGGTATATAACGACAAGAGCAACACACTGCAAATC
____________________________________________________________
consensus AAAATTGCAAAAGCCATTCAAAACAGGGTATATAACGACAAGAGCAACACACTGCAAATC
. : . : . : . : . : . :
JMFF005E17+ CAAGACATGGCGAAAAGGACGTATTCACCCCCGCTTAATCTTCATCCTCGGCATCATTTT
JMFN042L20+ TATTCCCCCCCGCTTAATCTTCATCCTCGACATCATGTT
rJMFF027B03- CAAGACATGGCGAAAAGGACGTATTCACCCCCGCTTAATCTTCATCCTCGGCATCATTTT
JMFF027B03+ CTTAATCTTCATCCTCGGCATCATTTT
rJMSF017F02- CAAGACATGGCGAAAAGGACGCATTCACCCCCGCTTAATCTTCATCCTCGGCATCATTTT
rJMSF016F02- CTTAATCTTCATCCTCGGCATCATTTT
____________________________________________________________
consensus CAAGACATGGCGAAAAGGACGTATTCACCCCCGCTTAATCTTCATCCTCGGCATCATTTT
. : . : . : . : . : . :
JMFF005E17+ CAGCAATGTTGAAGTACCTCAATTCGTAGACACTTCTATCCTTGTTTGAAGAAATGACGC
JMFN042L20+ CAGCAATGTGGAAGTACCTCAATTCGTACGCACTTCTATCCTGGGTTGAAGAAATGACGC
rJMFF027B03- CAGCAATGTTGAAGTACCTCAATTCGTAGACACTTCTATCCTTGTTTGAAGAAATGACGC
JMFF027B03+ CAGCAATGTTGAAGTACCTCAATTCGTAGACACTTCTATCCTTGTTTGAAGAAATGACGC
rJMSF017F02- CAGCAATGTTGAAGTACCTCAATTCGTAGACACTTCTATCCTTGTTTGAAGAAATGACGC
rJMSF016F02- CAGCAATGTTGAAGTACCTCAATTCGTAGACACTTCTATCCTTGTTTGAAGAAATGACGC
____________________________________________________________
consensus CAGCAATGTTGAAGTACCTCAATTCGTAGACACTTCTATCCTTGTTTGAAGAAATGACGC
. : . : . : . : . : . :
JMFF005E17+ GGAGCCAGTCACGGACATTGTTCTTCTTTAGATACTTCTTTGTCAAGTATTTCAAATATC
JMFN042L20+ GGAACCAGTCACGGGCATTGTTCTTCTTTAGATACTTCTGTGTCAAGTATTTCAAATATC
rJMFF027B03- GGAGCCAGTCACGGACATTGTTCTTCTTTAGATACTTCTTTGTCAAGTATTTCAAATATC
JMFF027B03+ GGAGCCAGTCACGGACATTGTTCTTCTTTAGATACTTCTTTGTCAAGTATTTCAAATATC
rJMSF017F02- GGAGCCAGTCACGGACATTGTTCTTCTTTAGATACTTCTTTGTCAAGTATTTCAAATATC
rJMSF016F02- GGAGCCAGTCACGGACATTGTTCTTCTTTAGATACTTCTTTGTCAAGTATTTCAAATATC
____________________________________________________________
consensus GGAGCCAGTCACGGACATTGTTCTTCTTTAGATACTTCTTTGTCAAGTATTTCAAATATC
. : . : . : . : . : . :
JMFF005E17+ GTTTGGAGAAGTTGGAGTCGGAAGTGACGGTGATCTTGGTCTTGTCACGGGTGACGGTGA
JMFN042L20+ GTTTGGAGAAGTTGGAGTCGGAAGTGGCGGTGATCTTGGTCTTGTCACGGGTGACGGTGA
rJMFF027B03- GTTTGGAGAAGTTGGAGTCGGAAGTGACGGTGATCTTGGTCTTGTCACGGGTGACGGTGA
JMFF027B03+ GTTTGGAGAAGTTGGAGTCGGAAGTGACGGTGATCTTGGTCTTGTCACGGGTGACGGTGA
rJMSF017F02- GTTTGGAGAAGTTGGAGTCGGAAGTGACGGTGATCTTGGTCTTGTCACGGGTGACGGTGA
rJMSF016F02- GTTTGGAGAAGTTGGAGTCGGAAGTGACGGTGATCTTGGTCTTGTCACGGGTGACGGTGA
JMSF017F02+ GAGTCGGAAGTGACGGTGATCTTGGTCTTGTCACGGGTGACGGTGA
JMSF016F02+ GAGTCGGAAGTGACGGTGATCTTGGTCTTGTCACGGGTGACGGTGA
____________________________________________________________
consensus GTTTGGAGAAGTTGGAGTCGGAAGTGACGGTGATCTTGGTCTTGTCACGGGTGACGGTGA
. : . : . : . : . : . :
JMFF005E17+ CGGAGTCGCCGAGGGCTCCGGCCTTGCCGCCGACCTTAATGCGCTCCTGGAGGAACTTCT
JMFN042L20+ CGGAGTCGCCGAGGGCTCGGGCCTTGCCGCCGACCTTAATGCGCTCCTGGAGGAACTTCT
rJMFF027B03- CGGAGTCGCCGAGGGCTCCGGCCTTGCCGCCGACCTTAATGCGCTCCTGGAGGAACTTCT
JMFF027B03+ CGGAGTCGCCGAGGGCTCCGGCCTTGCCGCCGACCTTAATGCGCTCCTGGAGGAACTTCT
rJMSF017F02- CGGAGTCGCCGAGGGCTCCGGCCTTGCCGCCGACCTTAATGCGCTCCTGGAGGAACTTCT
rJMSF016F02- CGGAGTCGCCGAGGGCTCCGGCCTTGCCGCCGACCTTAATGCGCTCCTGGAGGAACTTCT
JMSF017F02+ CGGAGTCGCCGAGGGCTCCGGCCTTGCCGCCGACCTTAATGCGCTCCTGGAGGAACTTCT
JMSF016F02+ CGGAGTCGCCGAGGGCTCCGGCCTTGCCGCCGACCTTAATGCGCTCCTGGAGGAACTTCT
____________________________________________________________
consensus CGGAGTCGCCGAGGGCTCCGGCCTTGCCGCCGACCTTAATGCGCTCCTGGAGGAACTTCT
. : . : . : . : . : . :
JMFF005E17+ CCAGTGAGGCAATGTCCATAATCTTATCGTCCACAGGTTTCGAGCAGTCGATCACAAACG
JMFN042L20+ CCAGTGAGGCAATGTCCATAATCTTATCGTCCACAGGTTTCGAGCAGTCGATCACAAACG
rJMFF027B03- CCAGTGAGGCAATGTCCATAATCTTATCGTCCACAGGTTTCGAGCAGTCGATCACAAACG
JMFF027B03+ CCAGTGAGGCAATGTCCATAATCTTATCGTCCACAGGTTTCGAGCAGTCGATCACAAACG
rJMSF017F02- CCAGTGAGGCAATGTCCATAATCTTATCGTCCACAGGTTTCGAGCAGTCGATCACAAACG
rJMSF016F02- CCAGTGAGGCAATGTCCATAATCTTATCGTCCACAGGTTTCGAGCAGTCGATCACAAACG
JMSF017F02+ CCAGTGAGGCAATGTCCATAATCTTATCGTCCACAGGTTTCGAGCAGTCGATCACAAACG
JMSF016F02+ CCAGTGAGGCAATGTCCATAATCTTATCGTCCACAGGTTTCGAGCAGTCGATCACAAACG
____________________________________________________________
consensus CCAGTGAGGCAATGTCCATAATCTTATCGTCCACAGGTTTCGAGCAGTCGATCACAAACG
. : . : . : . : . : . :
JMFF005E17+ TCGCCCCCTTCTTCTTCCCTCCCTTGAGGGCCCCACCTCCGCTGCTTCCTTTGCTCATTC
JMFN042L20+ TCGCCCCCTTCTTCTTCCCTCCCTTGAGGGCCCCACCTCCGCTGCTTCCTT
rJMFF027B03- TCGCCCCCTTCTTCTTCCCTCCCTTGAGGGCCCCACCTCCGCTGCTTCCTTTGCTCATTC
JMFF027B03+ TCGCCCCCTTCTTCTTCCCTCCCTTGAGGGCCCCACCTCCGCTGCTTCCTTTGCTCATTC
rJMSF017F02- TCGCCCCCTTCTTCTTCCCTCCCTTGAGGGCCCCACCTCCGCTGCTTCCTTTGCTCATTC
rJMSF016F02- TCGCCCCCTTCTTCTTCCCTCCCTTGAGGGCCCCACCTCCGCTGCTTCCTTTGCTCATTC
JMSF017F02+ TCGCCCCCTTCTTCTTCCCTCCCTTGAGGGCCCCACCTCCGCTGCTTCCTTTGCTCATTC
JMSF016F02+ TCGCCCCCTTCTTCTTCCCTCCCTTGAGGGCCCCACCTCCGCTGCTTCCTTTGCTCATTC
____________________________________________________________
consensus TCGCCCCCTTCTTCTTCCCTCCCTTGAGGGCCCCACCTCCGCTGCTTCCTTTGCTCATTC
. : . : . : . : . : . :
JMFF005E17+ TTCTCTGCTTAGGTTTCCTGAGCGGCTGAAAGGAGTATATTA
rJMFF027B03- TTCTCTGCTTAGGTTTCCTGAGCGGCTGAAAGGAGTATATTAGGATAT
JMFF027B03+ TTCTCTGCTTAGGTTTCCTGAGCGGCTGAAAGGAGTATATTAGGATAT
rJMSF017F02- TTCTCTGCTTAGGTTTCCTGAGCGGCTGAAAGGAGTATATTAGGATATGAGAAGGAGATC
rJMSF016F02- TTCTCTGCTTAGGTTTCCTGAGCGGCTGAAAGGAGTATATTAGGATATGAGAAGGAGATC
JMSF017F02+ TTCTCTGCTTAGGTTTCCTGAGCGGCTGAAAGGAGTATATTAGGATATGAGAAGGAGATC
JMSF016F02+ TTCTCTGCTTAGGTTTCCTGAGCGGCTGAAAGGAGTATATTAGGATATGAGAAGGAGATC
____________________________________________________________
consensus TTCTCTGCTTAGGTTTCCTGAGCGGCTGAAAGGAGTATATTAGGATATGAGAAGGAGATC