Contig 005030:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF019O16Sequence575005030 (5)ref|XP_009602601.1|3e-26PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-2.1-like [Nicotiana 744005651 (5)gb|AHN63210.1|1e-76transcription factor TGA2 [Salvia miltiorrhiza f. alba]
JMSF003O03Sequence334005030 (5)780005651 (5)gb|AHN63210.1|4e-87transcription factor TGA2 [Salvia miltiorrhiza f. alba]
JMSF016B13Sequence518005030 (5)ref|XP_009602601.1|1e-24PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-2.1-like [Nicotiana 793005651 (5)gb|AHN63210.1|5e-87transcription factor TGA2 [Salvia miltiorrhiza f. alba]
JMSF016E12Sequence519005030 (5)ref|XP_009602601.1|5e-25PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-2.1-like [Nicotiana 795005651 (5)gb|AHN63210.1|2e-90transcription factor TGA2 [Salvia miltiorrhiza f. alba]
JMSF025M24Sequence644005030 (5)ref|XP_009602601.1|2e-27PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-2.1-like [Nicotiana 817005651 (5)ref|XP_009759888.1|2e-127PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-2.1 [Nicotiana sylve

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF025M24+ ATTCTCATGATGAGTAGTACCAGATAGAGGAACTTGATTTGTCGGTA
                      ____________________________________________________________
consensus ATTCTCATGATGAGTAGTACCAGATAGAGGAACTTGATTTGTCGGTA
 
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JMSF025M24+ TTCCTCTTTGCAACTGAAGTGCCTGGGATCCGGTAGCAGCAGCAGACAAACTTGTGCTTA
JMFF019O16+ GGGATCCGGTAGCAGCAGCAGACAAACTTGTGCTTA
                      ____________________________________________________________
consensus TTCCTCTTTGCAACTGAAGTGCCTGGGATCCGGTAGCAGCAGCAGACAAACTTGTGCTTA
 
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JMSF025M24+ GAGAAGCAAGATTCTTGTTCAGTGCTCCAGACACATCAGTGCCCATTAATGAATTAGTTC
JMFF019O16+ GAGAAGCAAGATTCTTGTTCAGTGCTCCAGACACATCAGTGCCCATTAATGAATTAGTTC
                      ____________________________________________________________
consensus GAGAAGCAAGATTCTTGTTCAGTGCTCCAGACACATCAGTGCCCATTAATGAATTAGTTC
 
. : . : . : . : . : . :
JMSF025M24+ CAGATGTTGAACTTAAAAGGGGCCTTCGACTAGGATTAGCACCATCTCCAATTCGGAAAC
JMSF016B13+ CCATCTCCAATTCGGAAAC
JMFF019O16+ CAGATGTTGAACTTAAAAGGGGCCTTCGACTAGGATTAGCACCATCTCCAATTCGGAAAC
JMSF016E12+ CCATCTCCAATTCGGAAAC
                      ____________________________________________________________
consensus CAGATGTTGAACTTAAAAGGGGCCTTCGACTAGGATTAGCACCATCTCCAATTCGGAAAC
 
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JMSF025M24+ CAAGATATTGCTCAAGCACCCCAAAATCAGATATAACTGGATTCTGCGTAGTGTTCCCTT
JMSF016B13+ CAAGATATTGCTCAAGCACCCCAAAATCAGATATAACTGGATTCTGCGTAGTGTTCCCTT
JMFF019O16+ CAAGATATTGCTCAAGCACCCCAAAATCAGATATAACTGGATTCTGCGTAGTGTTCCCTT
JMSF016E12+ CAAGATATTGCTCAAGCACCCCAAAATCAGATATAACTGGATTCTGCGTAGTGTTCCCTT
                      ____________________________________________________________
consensus CAAGATATTGCTCAAGCACCCCAAAATCAGATATAACTGGATTCTGCGTAGTGTTCCCTT
 
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JMSF025M24+ CTGTGCCCATAGGATTGGAAACTGGTGTTTGAGAAATGAAGCTTGGCATCCCAGCAGTGA
JMSF003O03+ AAACTGGTGTTTGAGAAATGAAGCTTGGCATCCCAGCAGTGA
JMSF016B13+ CTGTGCCCATAGGATTGGAAACTGGTGTTTGAGAAATGAAGCTTGGCATCCCAGCAGTGA
JMFF019O16+ CTGTGCCCATAGGATTGGAAACTGGTGTTTGAGAAATGAAGCTTGGCATCCCAGCAGTGA
JMSF016E12+ CTGTGCCCATAGGATTGGAAACTGGTGTTTGAGAAATGAAGCTTGGCATCCCAGCAGTGA
                      ____________________________________________________________
consensus CTGTGCCCATAGGATTGGAAACTGGTGTTTGAGAAATGAAGCTTGGCATCCCAGCAGTGA
 
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JMSF025M24+ CAATCTTATTACCTTCCCTACCAACCTTCAGTGTGGAACTACCATCCATGAACCAACCAT
JMSF003O03+ CAATCTTATTACCTTCCCTACCAACCTTCAGTGTGGAACTACCATCCATGAACCAACCAT
JMSF016B13+ CAATCTTATTACCTTCCCTACCAACCTTCAGTGTGGAACTACCATCCATGAACCAACCAT
JMFF019O16+ CAATCTTATTACCTTCCCTACCAACCTTCAGTGTGGAACTACCATCCATGAACCAACCAT
JMSF016E12+ CAATCTTATTACCTTCCCTACCAACCTTCAGTGTGGAACTACCATCCATGAACCAACCAT
                      ____________________________________________________________
consensus CAATCTTATTACCTTCCCTACCAACCTTCAGTGTGGAACTACCATCCATGAACCAACCAT
 
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JMSF025M24+ CCTCAAAGTTTTACAGTTCCCACAACTCAAAATCAAGAAATCTCCAGTCGACTTTGAGCT
JMSF003O03+ CCTCAAAGTTTTACAGTTCCCACAACTCAAAATCAAGAAATCTCCAGTCGACTTTGAGCT
JMSF016B13+ CCTCAAAGTTTTACAGTTCCCACAACTCAAAATCAAGAAATCTCCAGTCGACTTTGAGCT
JMFF019O16+ CCTCAAAGTTTTACAGTTCCCACAACTCAAAATCAAGAAATCTCCAGTCGACTTTGAGCT
JMSF016E12+ CCTCAAAGTTTTACAGTTCCCACAACTCAAAATCAAGAAATCTCCAGTCGACTTTGAGCT
                      ____________________________________________________________
consensus CCTCAAAGTTTTACAGTTCCCACAACTCAAAATCAAGAAATCTCCAGTCGACTTTGAGCT
 
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JMSF025M24+ AGACGCTGAGAGTGAGTACAAGTTTACAAGGGTGAAGAAAGCATGAAACTGAGATGAATT
JMSF003O03+ AGACGCTGAGAGTGAGTACAAGTTTACAAGGGTGAAGAAAGCATGAAACTGAGATGAATT
JMSF016B13+ AGACGCTGAGAGTGAGTACAAGTTTACAAGGGTGAAGAAAGCATGAAACTGAGATGAATT
JMFF019O16+ AGACGCTGAGAGTGAGTACAAGTTTACAAGGGTGAAGAAAGCATGAAACTGAGATGAATT
JMSF016E12+ AGACGCTGAGAGTGAGTACAAGTTTACAAGGGTGAAGAAAGCATGAAACTGAGATGAATT
                      ____________________________________________________________
consensus AGACGCTGAGAGTGAGTACAAGTTTACAAGGGTGAAGAAAGCATGAAACTGAGATGAATT
 
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JMSF025M24+ TAGATTCGAAAAGATTGGGGTTGGGTGGAGTGAAGAACATGATGTTCATCTAGAAGTCTC
JMSF003O03+ TAGATTCGAAAAGATTGGGGTTGGGTGGAGTGAAGAACATGATGTTCATCTAGAAGTCTC
JMSF016B13+ TAGATTCGAAAAGATTGGGGTTGGGTGGAGTGAAGAACATGATGTTCATCTAGAAGTCTC
JMFF019O16+ TAGATTCGAAAAGATTGGGGTTGGGTGGAGTGAAGAACATGATGTTCATCTAGAAGTCTC
JMSF016E12+ TAGATTCGAAAAGATTGGGGTTGGGTGGAGTGAAGAACATGATGTTCATCTAGAAGTCTC
                      ____________________________________________________________
consensus TAGATTCGAAAAGATTGGGGTTGGGTGGAGTGAAGAACATGATGTTCATCTAGAAGTCTC
 
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JMSF025M24+ CCTCTTCCTTCCCCACCTCCGAATACATTTTGTGCACAAAATTCCACTGACCCAGC
JMSF003O03+ CCTCTTCCTTCCCCACCTCCGAATACATTTTGTGCAC
JMSF016B13+ CCTCTTCCTTCCCCACCTCCGAATACATTTTGTGCACAAAATTCCACTGACCCAGC
JMFF019O16+ CCTCTTCCTTCCCCACCTCCGAATACATTTTGTGCACAAAATTCCACTGACCCAGC
JMSF016E12+ CCTCTTCCTTCCCCACCTCCGAATACATTTTGTGCACAAAATTCCACTGACCCAGCAGCC
                      ____________________________________________________________
consensus CCTCTTCCTTCCCCACCTCCGAATACATTTTGTGCACAAAATTCCACTGACCCAGCAGCC