Contig 005018:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF014L13Sequence198005018 (3)789011404 (3)ref|XP_009759751.1|8e-101PREDICTED: leucine-rich repeat receptor-like protein CLAVATA2 [Nicotiana sylves
JMSF014P01Sequence389005018 (3)ref|XP_008218434.1|2e-04PREDICTED: leucine-rich repeat receptor-like protein CLAVATA2 [Prunus mume]757011404 (3)ref|XP_009759751.1|1e-88PREDICTED: leucine-rich repeat receptor-like protein CLAVATA2 [Nicotiana sylves
JMSF042P23Sequence601005018 (3)ref|XP_011084648.1|2e-37PREDICTED: leucine-rich repeat receptor-like protein CLAVATA2 [Sesamum indicum]721011404 (3)ref|XP_009759751.1|8e-89PREDICTED: leucine-rich repeat receptor-like protein CLAVATA2 [Nicotiana sylves

Alignment

This contig is upended


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JMSF042P23+                                         GCTTCGTCGAGAAATTCCCCATCCACACCG
                      ____________________________________________________________
consensus                                           GCTTCGTCGAGAAATTCCCCATCCACACCG
 
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JMSF042P23+           GGATTTCGCCGCTCAACATGTTATTCCCGACGTCGAGATCAATTAACTGGCTCAAATTCT
                      ____________________________________________________________
consensus             GGATTTCGCCGCTCAACATGTTATTCCCGACGTCGAGATCAATTAACTGGCTCAAATTCT
 
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JMSF042P23+           CAAGCGCGCCGGGAATTTCACCGGCGAACGCATTATAGCTGAGATCTAAAGTCCTGAGAT
                      ____________________________________________________________
consensus             CAAGCGCGCCGGGAATTTCACCGGCGAACGCATTATAGCTGAGATCTAAAGTCCTGAGAT
 
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JMSF042P23+           TCGACAACTGACCAAAACACGCCGGAATCGAACCACTGAAGCTATTGCGAGACAGCAAAA
                      ____________________________________________________________
consensus             TCGACAACTGACCAAAACACGCCGGAATCGAACCACTGAAGCTATTGCGAGACAGCAAAA
 
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JMSF042P23+           GGGTTTCCAGAAATGTAAGATTGCATAGAGAGGAATGAACCTGGCCTGACAAGTTGAGCC
                      ____________________________________________________________
consensus             GGGTTTCCAGAAATGTAAGATTGCATAGAGAGGAATGAACCTGGCCTGACAAGTTGAGCC
 
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JMSF042P23+           CGGTGAGGTTGAGGATGGTGACTCTTCCGGTCTGGTTAGACCGGGTGACCCCGGTCCAGT
JMSF014P01+                                          CTGGTTAGACCGGGTGACCCCGGTCCAGT
                      ____________________________________________________________
consensus             CGGTGAGGTTGAGGATGGTGACTCTTCCGGTCTGGTTAGACCGGGTGACCCCGGTCCAGT
 
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JMSF042P23+           TGAACCCGCCTTCCTCCCAGCTCGACAGGCTGTGATACGGGTCTTGAAGCTGCGATTTGA
JMSF014P01+           TGAACCCGCNTTCCTCCCAGCTCGACAGGCTGTGATACGGGTCTTGAAGCTGCGATTTGA
                      ____________________________________________________________
consensus             TGAACCCGCCTTCCTCCCAGCTCGACAGGCTGTGATACGGGTCTTGAAGCTGCGATTTGA
 
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JMSF042P23+           ACAGCAGGAGCGAAGCCATGTCGTCCTCTTGAAGCTCAAGAAGGGCAGAAAAGGTAGAAT
JMSF014P01+           ACAGCAGGAGCGAAGCCATGTCGTCCTCTTGAAGCTCAAGAAGGGCAGAAAAGGTAGAAT
                      ____________________________________________________________
consensus             ACAGCAGGAGCGAAGCCATGTCGTCCTCTTGAAGCTCAAGAAGGGCAGAAAAGGTAGAAT
 
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JMSF042P23+           TTCCGGCGTTATGGAAAGGGAACCCGAACCCAGAAAGAGTTGCAGGGCGCAAAGAAGATA
JMSF014P01+           TTCCGGCGTTATGGAAAGGGAACCCGAACCCAGAAAGAGTTGCAGGGCGCAAAGAAGATA
JMSF014L13+                                                     CAGGGCGCAAAGAAGATA
                      ____________________________________________________________
consensus             TTCCGGCGTTATGGAAAGGGAACCCGAACCCAGAAAGAGTTGCAGGGCGCAAAGAAGATA
 
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JMSF042P23+           ACAGCAAGAAGAAGAAGAAATGGAGTGGCATGTTTGGTAATTTGAAGGGTTTGAGAGGTC
JMSF014P01+           ACAGCAAGAAGAAGAAGAAATGGAGTGGCATGTTTGGTAATTTGAAGGGTTTGAGAGGTC
JMSF014L13+           ACAGCAAGAAGAAGAAGAAATGGAGTGGCATGTTTGGTAATTTGAAGGGTTTGAGAGGTC
                      ____________________________________________________________
consensus             ACAGCAAGAAGAAGAAGAAATGGAGTGGCATGTTTGGTAATTTGAAGGGTTTGAGAGGTC
 
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JMSF042P23+           TAAAATGCAAAACCCATCTTCCTCAGCCTC                              
JMSF014P01+           TAAAATGCAAAACCCATCTTCCTCAGCCTCTTAGAACAATGGAGTTGTTGGGCGTTTGGA
JMSF014L13+           TAAAATGCAAAACCCATCTTCCTCAGCCTCTTAGAACAATGGAGTTGTTGGGCGTTTGGA
                      ____________________________________________________________
consensus             TAAAATGCAAAACCCATCTTCCTCAGCCTCTTAGAACAATGGAGTTGTTGGGCGTTTGGA
 
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JMSF014P01+           ATCAAAGTAGCTACTGGGCAGAGACGAATGAGAATCGTTACTCCCATTAAAGAACCAACC
JMSF014L13+           ATCAAAGTAGCTACTGGGCAGAGACGAATGAGAATCGTTACTCCCATTAAAGAACCAACC
                      ____________________________________________________________
consensus             ATCAAAGTAGCTACTGGGCAGAGACGAATGAGAATCGTTACTCCCATTAAAGAACCAACC