Contig 005000:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF035P05Sequence467005000 (6)
JMFF047N15Sequence607005000 (6)ref|XP_010109636.1|2e-37hypothetical protein L484_015591 [Morus notabilis] gb|EXC23681.1| hypothetical p579006983 (2)ref|XP_009619160.1|6e-27PREDICTED: auxin transporter-like protein 4 [Nicotiana tomentosiformis]
JMSF011A04Sequence257005000 (6)
JMSF013I24Sequence350005000 (6)114022483
JMSF014K06Sequence575005000 (6)ref|XP_010109636.1|1e-22hypothetical protein L484_015591 [Morus notabilis] gb|EXC23681.1| hypothetical p132006983 (2)
JMSF022E19Sequence616005000 (6)ref|XP_010109636.1|5e-39hypothetical protein L484_015591 [Morus notabilis] gb|EXC23681.1| hypothetical p

Alignment

This contig is upended


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JMSF022E19+                                                                     CT
                      ____________________________________________________________
consensus                                                                       CT
 
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JMSF022E19+           GCTTCTGTACTCAACGTAGAGGACACTGATCAGATAAGCTGTCCAGCTACCAATCAGGCC
JMFF047N15+                 GTACTCAACGTAGAGGACACTGATCAGATAAGCTGTCCAGCTACCAATCAGGCC
                      ____________________________________________________________
consensus             GCTTCTGTACTCAACGTAGAGGACACTGATCAGATAAGCTGTCCAGCTACCAATCAGGCC
 
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JMSF022E19+           GTAGAAGACTTGGAACAAAAGCCCAGATAGAATTCCAAGTTGCGAAAAGGAGTATGGCAG
JMFF047N15+           GTAGAAGACTTGGAACAAAAGCCCAGATAGAATTCCAAGTTGCGAAAAGGAGTATGGCAG
JMSF014K06+                             AAGCCCAGATAGAATTCCAAGTTGCGAAAAGGAGTATGGCAG
                      ____________________________________________________________
consensus             GTAGAAGACTTGGAACAAAAGCCCAGATAGAATTCCAAGTTGCGAAAAGGAGTATGGCAG
 
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JMSF022E19+           GGTTAACAGCACTTGTGCCACCTGATTGGAAGCACAACTGAACCAAGCATCCCAAGCGGA
JMFF047N15+           GGTTAACAGCACTTGTGCCACCTGATTGGAAGCACAACTGAACCAAGCATCCCAAGCGGA
JMFF035P05+                                                            TCCCAAGCGGA
JMSF014K06+           GGTTAACAGCACTTGTGCCACCTGATTGGAAGCACAACTGAACCAAGCATCCCAAGCGGA
                      ____________________________________________________________
consensus             GGTTAACAGCACTTGTGCCACCTGATTGGAAGCACAACTGAACCAAGCATCCCAAGCGGA
 
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JMSF022E19+           GCCGCCATGCCAGAGAAAGTTCTTCATACTGAACATGGACTCATTCTCTTCTTCTTTCTC
JMFF047N15+           GCCGCCATGCCAGAGAAAGTTCTTCATACTGAACATGGACTCATTCTCTTCTTCTTTCTC
JMFF035P05+           GCCGCCATGCCAGAGAAAGTTCTTCATACTGAACATGGACTCATTCTCTTCTTCTTTCTC
JMSF014K06+           GCCGCCATGCCAGAGAAAGTTCTTCATACTGAACATGGACTCATTCTCTTCTTCTTTCTC
                      ____________________________________________________________
consensus             GCCGCCATGCCAGAGAAAGTTCTTCATACTGAACATGGACTCATTCTCTTCTTCTTTCTC
 
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JMSF013I24+                           CTCCCAACCCCGCCGTCGTGTTCTGAGCTGGAGACTATTGCTTC
JMSF022E19+           GCCGAAGCCTTCTTTGCTCCCAACCCCGCCGTCGTGTTCTGAGCTGGAGACTATTGCTTC
JMFF047N15+           GCCGAAGCCTTCTTTGCTCCCAACCCCGCCGTCGTGTTCTGAGCTGGAGACTATTGCTTC
JMFF035P05+           GCCGAAGCCTTCTTTGCTCCCAACCCCGCCGTCGTGTTCTGAGCTGGAGACTATTGCTTC
JMSF014K06+           GCCGAAGCCTTCTTTGCTCCCAACCCCGCCGTCGTGTTCTGAGCTGGAGACTATTGCTTC
                      ____________________________________________________________
consensus             GCCGAAGCCTTCTTTGCTCCCAACCCCGCCGTCGTGTTCTGAGCTGGAGACTATTGCTTC
 
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JMSF013I24+           CTCGGCTTGCTTCTGAGGCAACATTGTTTTTCGATTCTTTCTTCCAGCAAGAACTTCTCC
JMSF022E19+           CTCGGCTTGCTTCTGAGGCAACATTGTTTTTCGATTCTTTCTTCCAGCAAGAACTTCTCC
JMFF047N15+           CTCGGCTTGCTTCTGAGGCAACATTGTTTTTCGATTCTTTCTTCCAGCAAGAACTTCTCC
JMFF035P05+           CTCGGCTTGCTTCTGAGGCAACATTGTTTTTCGATTCTTTCTTCCAGCAAGAACTTCTCC
JMSF014K06+           CTCGGCTTGCTTCTGAGGCAACATTGTTTTTCGATTCTTTCTTCCAGCAAGAACTTCTCC
                      ____________________________________________________________
consensus             CTCGGCTTGCTTCTGAGGCAACATTGTTTTTCGATTCTTTCTTCCAGCAAGAACTTCTCC
 
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JMSF013I24+           AATTCCCAGTGGGAGAATGAACAGAAATATAAATTTGGTAGAGGGAAATAAATGCAGGCC
JMSF022E19+           AATTCCCAGTGGGAGAATGAACAGAAATATAAATTTGGTAGAGGGAAATAAATGCAGGCC
JMFF047N15+           AATTCCCAGTTGGAGAATGAACAGAAATATAAATTTGGTAGAGGGAAATAAATGCAGGCC
JMFF035P05+           AATTCCCAGTGGGAGAATGAACAGAAATATAAATTTGGTAGAGGGAAATAAATGCAGGCC
JMSF014K06+           AATTCCCAGTGGGAGAATGAACAGAAATATAAATTTGGTAGAGGGAAATAAATGCAGGCC
JMSF011A04+                                                      GGAAATAAATGCAGGCC
                      ____________________________________________________________
consensus             AATTCCCAGTGGGAGAATGAACAGAAATATAAATTTGGTAGAGGGAAATAAATGCAGGCC
 
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JMSF013I24+           AAAAACGATGGCACCCGGAGCTCCACTTAAATGCAGGGATTTGATTGTAGCACAAGAATG
JMSF022E19+           AAAAACGATGGCACCCGGAGCTCCACTTAAATGCAGGGATTTGATTGTAGCACAAGAATG
JMFF047N15+           AAAAACGATGGCACCCGGAGCTCCACTTAAATGCAGGGATTTGATTGTAGCACAAGAATG
JMFF035P05+           AAAAACGATGGCACCCGGAGCTCCACTTAAATGCAGGGATTTGATTGTAGCACAAGAATG
JMSF014K06+           AAAAACGATGGCACCCGGAGCTCCACTTAAATGCAGGGATTTGATTGTAGCACAAGAATG
JMSF011A04+           AAAAACGATGGCACCCGGAGCTCCACTTAAATGCAGGGATTTGATTGTAGCACAAGAATG
                      ____________________________________________________________
consensus             AAAAACGATGGCACCCGGAGCTCCACTTAAATGCAGGGATTTGATTGTAGCACAAGAATG
 
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JMSF013I24+           CGGCGAGAGAGAAAGACAGCCCTCAAAAGCTGCAAAAGCTCAGAGGGACTGAGAAAAAGA
JMSF022E19+           CGGCGAGAGAGAAAGACAGCCCTCAAAAGCTGCAAAAGCTCAGAGGGACTGAGAAAAAGA
JMFF047N15+           CGGCGAGAGAGAAAGACAGCCCTCAAAAGCTGCAAAAGCTCAGAGGGACTGAGAAAAAGA
JMFF035P05+           CGGCGAGAGAGAAAGACAGCCCTCAAAAGCTGCAAAAGCTCAGAGGGACTGAGAAAAAGA
JMSF014K06+           CGGCGAGAGAGAAAGACAGCCCTCAAAAGCTGCAAAAGCTCAGAGGGACTGAGAAAAAGA
JMSF011A04+           CGGCGAGAGAGAAAGACAGCCCTCAAAAGCTGCAAAAGCTCAGAGGGACTGAGAAAAAGA
                      ____________________________________________________________
consensus             CGGCGAGAGAGAAAGACAGCCCTCAAAAGCTGCAAAAGCTCAGAGGGACTGAGAAAAAGA
 
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JMSF013I24+           GTGTTCTGTTCTGCAGTTTTGTTCTAATTATTACAGAGAGAAAGGAAAGAAGGGTCTTTC
JMSF022E19+           GTGTTCTGTTCTGCAGTTTTGTTCTAATTATTACAGAGAGAAAGGAAAGAAGGGTCTTTC
JMFF047N15+           GTGTTCTGTTCTGCAGTTTTGTTCTAATTATTACAGAGAGAAAGGAAAGAAGGGTCTTTC
JMFF035P05+           GTGTTCTGTTCTGCAGTTTTGTTCTAATTATTACAGAGAGAAAGGAAAGAAGGGTCTTTC
JMSF014K06+           GTGTTCTGTTCTGCAGTTTTGTTCTAATTATTACAGAGAGAAAGGAAAGAAGGGTCTTTC
JMSF011A04+           GTGTTCTGTTCTGCAGTTTTGTTCTAATTATTACAGAGAGAAAGGAAAGAAGGGTCTTTC
                      ____________________________________________________________
consensus             GTGTTCTGTTCTGCAGTTTTGTTCTAATTATTACAGAGAGAAAGGAAAGAAGGGTCTTTC
 
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JMSF013I24+           ACTCT                                                       
JMSF022E19+           ACTCTTTCTTG                                                 
JMFF047N15+           ACTCTTTCTTGCT                                               
JMFF035P05+           ACTCTTTCTTGCTGAAGATACAGAGAGAT                               
JMSF014K06+           ACTCTTTCTTGCTGAAGATACAGAGAGATTGTATATATTATATAAACAGCCT        
JMSF011A04+           ACTCTTTCTTGCTGAAGATACAGAGAGATNGTATATATTATATAAACAGCCTAGCTTTCC
                      ____________________________________________________________
consensus             ACTCTTTCTTGCTGAAGATACAGAGAGATTGTATATATTATATAAACAGCCTAGCTTTCC