clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF003D24 | Sequence | 417 | 004997 (13) | ref|XP_007028858.1| | 8e-18 | Transducin/WD40 repeat-like superfamily protein isoform 2, partial [Theobroma c | 698 | 004997 (13) | ref|XP_009596754.1| | 3e-50 | PREDICTED: protein LST8 homolog [Nicotiana tomentosiformis] ref|XP_009767070.1| |
JMSF008K02 | Sequence | 156 | 004997 (13) | ref|XP_007028858.1| | 1e-20 | Transducin/WD40 repeat-like superfamily protein isoform 2, partial [Theobroma c | |||||
JMSF008L02 | Sequence | 420 | 004997 (13) | ref|XP_007028858.1| | 3e-19 | Transducin/WD40 repeat-like superfamily protein isoform 2, partial [Theobroma c | 741 | 004997 (13) | ref|XP_009596754.1| | 1e-107 | PREDICTED: protein LST8 homolog [Nicotiana tomentosiformis] ref|XP_009767070.1| |
JMSF010M09 | Sequence | 294 | 004997 (13) | 756 | 004997 (13) | ref|XP_009596754.1| | 2e-100 | PREDICTED: protein LST8 homolog [Nicotiana tomentosiformis] ref|XP_009767070.1| | |||
JMSF015B23 | Sequence | 252 | 004997 (13) | 766 | 004997 (13) | ref|XP_009596754.1| | 7e-50 | PREDICTED: protein LST8 homolog [Nicotiana tomentosiformis] ref|XP_009767070.1| | |||
JMSF017D14 | Sequence | 418 | 004997 (13) | tpg|DAA42242.1| | 1e-30 | TPA: hypothetical protein ZEAMMB73_993099 [Zea mays] | 802 | 004997 (13) | ref|XP_009596754.1| | 1e-147 | PREDICTED: protein LST8 homolog [Nicotiana tomentosiformis] ref|XP_009767070.1| |
JMSF045D15 | Sequence | 779 | 004997 (13) | ref|XP_004234794.1| | 5e-122 | PREDICTED: protein LST8 homolog [Solanum lycopersicum] | 781 | 004997 (13) | ref|XP_009596754.1| | 1e-147 | PREDICTED: protein LST8 homolog [Nicotiana tomentosiformis] ref|XP_009767070.1| |
This contig is upended
. : . : . : . : . : . :
rJMSF003D24- GGAGATTAATGAATCTAGAATCATCTCTTTTAAGTC
rJMSF015B23- ATGAATCTAGAATCATCTCTTTTAAGTC
rJMSF010M09- ATGAATCTAGAATCATCTCTTTTAAGTC
____________________________________________________________
consensus GGAGATTAATGAATCTAGAATCATCTCTTTTAAGTC
. : . : . : . : . : . :
rJMSF003D24- GTGCTCGTACGACGAAATAAAACTCTAGAAATCAAGCAATGATCTGAAAACTAGTATAGA
rJMSF015B23- GTGCTCGTACGACGAAATAAAACTCTAGAAATCAAGCAATGATCTGAAAACTAGTATAGA
rJMSF010M09- GTGCTCGTACGACGAAATAAAACTCTAGAAATCAAGCAATGATCTGAAAACTAGTATAGA
____________________________________________________________
consensus GTGCTCGTACGACGAAATAAAACTCTAGAAATCAAGCAATGATCTGAAAACTAGTATAGA
. : . : . : . : . : . :
rJMSF003D24- AAGTTGATGAGCATACTGCACAAGTACAAGTGTAAAACACCCCTCCAGGCTCCAGGTACC
rJMSF015B23- AAGTTGATGAGCATACTGCACAAGTACAAGTGTAAAACACCCCTCCAGGCTCCAGGTACC
rJMSF010M09- AAGTTGATGAGCATACTGCACAAGTACAAGTGTAAAACACCCCTCCAGGCTCCAGGTACC
____________________________________________________________
consensus AAGTTGATGAGCATACTGCACAAGTACAAGTGTAAAACACCCCTCCAGGCTCCAGGTACC
. : . : . : . : . : . :
rJMSF003D24- TGTAAGATTAAAGAATACTTCCAAGAATCAAAGAGGGTTTAGTTCAGTCAGGCCCATTAT
rJMSF015B23- TGTAAGATTAAAGAATACTTCCAAGAATCAAAGAGGGTTTAGTTCAGTCAGGCCCATTAT
rJMSF010M09- TGTAAGATTAAAGAATACTTCCAAGAATCAAAGAGGGTTTAGTTCAGTCAGGCCCATTAT
____________________________________________________________
consensus TGTAAGATTAAAGAATACTTCCAAGAATCAAAGAGGGTTTAGTTCAGTCAGGCCCATTAT
. : . : . : . : . : . :
rJMSF003D24- CTTGCTGGTTGACATGGACAAAATATTCTTTGCCAGTTTACCAAATCATCTGAAAACCAC
rJMSF015B23- CTTGCTGGTTGACATGGACAAAATATTCTTTGCCAGTTTACCAAATCATCTGAAAACCAC
rJMSF010M09- CTTGCTGGTTGACATGGACAAAATATTCTTTGCCAGTTTACCAAATCATCTGAAAACCAC
rJMSF008L02- TACCAAATCATCTGAAAACCAC
____________________________________________________________
consensus CTTGCTGGTTGACATGGACAAAATATTCTTTGCCAGTTTACCAAATCATCTGAAAACCAC
. : . : . : . : . : . :
rJMSF003D24- ATAATTGATGGATGAGCTAGCTAGCTAGAGGGTTCGGGCCCGTCATGGAGAGCGCAACAC
rJMSF015B23- ATAATTGATGGATGAGCTAGCTAGCTAGAGGGTTCGGGCCCGTCATGGAGAGCGCAACAC
rJMSF010M09- ATAATTGATGGATGAGCTAGCTAGCTAGAGGGTTCGGGCCCGTCATGGAGAGCGCAACAC
rJMSF008L02- ATAATTGATGGATGAGCTAGCTAGCTAGAGGGTTCGGGCCCGTCATGGAGAGCGCAACAC
____________________________________________________________
consensus ATAATTGATGGATGAGCTAGCTAGCTAGAGGGTTCGGGCCCGTCATGGAGAGCGCAACAC
. : . : . : . : . : . :
rJMSF003D24- ACAGCTGCCTTGTGATGTCCCTGGTATACTTTGATTTCTTTGCCACCAGACACGGACCAT
rJMSF015B23- ACAGCTGCCTTGTGATGTCCCTGGTATACTTTGATTTCTTTGCCACCAGACACGGACCAT
rJMSF010M09- ACAGCTGCCTTGTGATGTCCCTGGTATACTTTGATTTCTTTGCCACCAGACACGGACCAT
rJMSF008L02- ACAGCTGCCTTGTGATGTCCCTGGTATACTTTGATTTCTTTGCCACCAGACACGGACCAT
rJMSF045D15- GACATGGACCAT
rJMSF017D14- GACATGGACCAT
____________________________________________________________
consensus ACAGCTGCCTTGTGATGTCCCTGGTATACTTTGATTTCTTTGCCACCAGACACGGACCAT
. : . : . : . : . : . :
rJMSF003D24- AATCTCGCTGTTGTGTCGGAAGAAGCTGTGATTAGAAAAGCACCATCGACAGAGAAAACA
rJMSF015B23- AATCTCGCTGTTGTGTCGGAAGAAGCTGTGATTAGAAAAGCACCATCGACAGAGAAAACA
rJMSF010M09- AATCTCGCTGTTGTGTCGGAAGAAGCTGTGATTAGAAAAGCACCATCGACAGAGAAAACA
rJMSF008L02- AATCTCGCTGTTGTGTCGGAAGAAGCTGTGATTAGAAAAGCACCATCGACAGAGAAAACA
rJMSF045D15- AATCTCGCCGTTGTGTCAGAAGAAGCTGTGATTAGAAAAGCACCATCCACGGAGAAAACA
rJMSF017D14- AATCTCGCCGTTGTGTCAGAAGAAGCTGTGATTAGAAAAGCACCATCCACGGAGAAAACA
____________________________________________________________
consensus AATCTCGCTGTTGTGTCGGAAGAAGCTGTGATTAGAAAAGCACCATCGACAGAGAAAACA
. : . : . : . : . : . :
rJMSF003D24- CAGTCCCAGACCCAGCGTTCATGTCCTATGAGAGTTTTCTCCAAGGTAAATCCATCCACA
rJMSF015B23- CAGTCCCAGACCCAGCGTTCATGTCCTATGAGAGTTTTCTCCAAGGTAAATCCATCCACA
rJMSF010M09- CAGTCCCAGACCCAGCGTTCATGTCCTATGAGAGTTTTCTCCAAGGTAAATCCATCCACA
rJMSF008L02- CAGTCCCAGACCCAGCGTTCATGTCCTATGAGAGTTTTCTCCAAGGTAAATCCATCCACA
rJMSF045D15- CAGTCCCAAACCCACCGCTCATGTCCTTTGAGAGTTTTCTCCAAGGTAAATCCATCCACG
rJMSF017D14- CAGTCCCAAACCCACCGCTCATGTCCTTTGAGAGTTTTCTCCAAGGTAAATCCATCCACG
____________________________________________________________
consensus CAGTCCCAGACCCAGCGTTCATGTCCTATGAGAGTTTTCTCCAAGGTAAATCCATCCACA
. : . : . : . : . : . :
rJMSF003D24- TTCCATATCTTGACAGTATGATCAGAAGATGCTGTGGCCAGATACC
rJMSF015B23- TTCCATATCTTGACAGTATGATCAGAAGATGCTGTGGCCAGATACC
rJMSF010M09- TTCCATATCTTGACAGTATGATCAGAAGATGCTGTGGCCAGATACCGGTGAGGCTCACTC
rJMSF008L02- TTCCATATCTTGACAGTATGATCAGAAGATGCTGTGGCCAGATACCGGTGAGGCTCACTC
rJMSF045D15- TTCCATATTTTGACAGTACGATCAGAAGATGCTGTTGCCAGATACCGATGAGGCTCACAC
rJMSF017D14- TTCCATATTTTGACAGTACGATCAGAAGATGCTGTTGCCAGATACCGATGAGGCTCACAC
____________________________________________________________
consensus TTCCATATCTTGACAGTATGATCAGAAGATGCTGTGGCCAGATACCGGTGAGGCTCACTC
. : . : . : . : . : . :
rJMSF010M09- AACTCCGGGGAAAGGAGACATTTGAGGATGTATCCATCATGTGCTTGTAATTTATGAAGG
rJMSF008L02- AACTCCGGGGAAAGGAGACATTTGAGGATGTATCCATCATGTGCTTGTAATTTATGAAGG
rJMSF045D15- AACTCGGGGGAAAGGAGACATTTGAGAATGTATCCATCATGTGCTGGTAACTTATGCAGT
rJMSF017D14- AACTCGGGGGAAAGGAGACATTTGAGAATGTATCCATCATGTGCTGGTAACTTATGCAGT
____________________________________________________________
consensus AACTCGGGGGAAAGGAGACATTTGAGGATGTATCCATCATGTGCTTGTAATTTATGCAGT
. : . : . : . : . : . :
rJMSF010M09- GGCTCAAAGTTGGTCATAGTCTGGGTTCCCTGCAATAGACGCCAAACATAACATGTTCCA
rJMSF008L02- GGCTCAAAGTTGGTCATAGTCTGGGTTCCCTGCAATAGACGCCAAACATAACATGTTCCA
rJMSF045D15- GGCTCAAAGTTGGTCATAGTCTGGGTTCCACGCAATAAGCGCCAAACATAACATATTCCA
rJMSF017D14- GGCTCAAAGTTGGTCATAGTCTGGGTTCCACGCAATAAGCGCCAAACATAACATATTCCA
____________________________________________________________
consensus GGCTCAAAGTTGGTCATAGTCTGGGTTCCCTGCAATAGGCGCCAAACATAACATGTTCCA
. : . : . : . : . : . :
rJMSF010M09- TGATTATTTGCAGCCNCAACCAAGCTTCCATCCCACATTACAGTCAAAGACCTGACTGCG
rJMSF008L02- TGATTATTTGCAGCCACAACCAAGCTTCCATCCCACATTACAGTCAAAGACCTGACTGCG
rJMSF045D15- TTATTATTTGCAGCCACAACCAAGCTTCCATCCCACATTACAGTCAGAGACCTAACAGCA
rJMSF017D14- TTATTATTTGCAGCCACAACCAAGCTTCCATCCCACATTACAGTCAGAGACCTAACAGCA
JMSF045D15+ TTTGCAGCCACAACCAAGCTTCCATCCCACATTACAGTCAGAGACCTAACAGCA
____________________________________________________________
consensus TTATTATTTGCAGCCACAACCAAGCTTCCATCCCACATTACAGTCAGAGACCTAACAGCA
. : . : . : . : . : . :
rJMSF010M09- GTATCCAC
rJMSF008L02- GTATCCACCTCTGGAACCANTTCACAGCTGCATG
rJMSF045D15- GTATCCACCTCAGGAACCAACTCGCAGCTGCATGCATTTGCTTTCAAGTCCCATACTCGA
rJMSF017D14- GTATCCACCTCAGGAACCAACTCGCAGCTGCATGCATTTGCTTTCAAGTCCCATACTCGA
JMSF045D15+ GTATCCACCTCAGGAACCAACTCGCAGCTGCATGCATTTGCTTTCAAGTCCCATACTCGA
____________________________________________________________
consensus GTATCCACCTCAGGAACCAACTCGCAGCTGCATGCATTTGCTTTCAAGTCCCATACTCGA
. : . : . : . : . : . :
rJMSF045D15- ATATTTCCATTCTGATCACCAGATATAAGCTCAGTCTGGTTTGGATGCAAAACAACTGTG
rJMSF017D14- ATATTTCCATTCTGATCACCAGATATAAGCTCAGTCTGGTTTGGATGCAAAACAACTGTG
JMSF045D15+ ATATTTCCATTCTGATCACCAGATATAAGCTCAGTCTGGTTTGGATGCAAAACAACTGTG
____________________________________________________________
consensus ATATTTCCATTCTGATCACCAGATATAAGCTCAGTCTGGTTTGGATGCAAAACAACTGTG
. : . : . : . : . : . :
rJMSF045D15- TTGACAGCTGCACGGCTCTCATATTCTCTCTGAAACCCCGGTGCCCTCAAATCCCAAATC
rJMSF017D14- TTGACAGCTGCACGGCTCTCATATTCTCTCTGAAACCCCGGTGCCCTCAAATCCCAAATC
JMSF045D15+ TTGACAGCTGCACGGCTCTCATATTCTCTCTGAAACCCCGGTGCCCTCAAATCCCAAATC
____________________________________________________________
consensus TTGACAGCTGCACGGCTCTCATATTCTCTCTGAAACCCCGGTGCCCTCAAATCCCAAATC
. : . : . : . : . : . :
rJMSF045D15- TTTACTGTGCCATCTTCA
rJMSF017D14- TTTACTGTGCCATCTTCA
JMSF045D15+ TTTACTGTGCCATCTTCAGAACCAGAATACATCCAATTTCCATCACATTGAAATCCTACT
____________________________________________________________
consensus TTTACTGTGCCATCTTCAGAACCAGAATACATCCAATTTCCATCACATTGAAATCCTACT
. : . : . : . : . : . :
JMSF045D15+ GCCATAACATTGTTAGTGTGTGAATCAAAGCTTTGTATAGGCTGAGGGCTGTTAGAATTG
____________________________________________________________
consensus GCCATAACATTGTTAGTGTGTGAATCAAAGCTTTGTATAGGCTGAGGGCTGTTAGAATTG
. : . : . : . : . : . :
JMSF017D14+ GGATGTGAGGGTTGCCTGCTGCAGCCAGGTAAAGTTTATCTGGCGTA
JMSF045D15+ ATGTCGAACAATCGGATGTGAGGGTTGCCTGCTGCAGCCAGGTAAAGTTTATCTGGCGTA
JMSF008K02+ A
JMSF008L02+ A
____________________________________________________________
consensus ATGTCGAACAATCGGATGTGAGGGTTGCCTGCTGCAGCCAGGTAAAGTTTATCTGGCGTA
. : . : . : . : . : . :
JMSF017D14+ ATCTCAAGCCGATTGACTTGTGATTCTGGGTATTGGATAGTCCGGTAACAGCGGGCACTT
JMSF045D15+ ATCTCAAGCCGATTGACTTGTGATTCTGGGTATTGGATAGTCCGGTAACAGCGGGCACTT
JMSF003D24+ CAAGCCGGTTGACTTGTGATTCAGGGTATTGGATAGTCCGAAAACAGCGGGCACTC
JMSF008K02+ ATCTCAAGCCGGTTGACTTGTGATTCAGGGTATTGGATAGTCCGAAAACAGCGGGCACTC
JMSF008L02+ ATCTCAAGCCGGTTGACTTGTGATTCAGGGTATTGGATAGTCCGAAAACAGCGGGCACTC
____________________________________________________________
consensus ATCTCAAGCCGGTTGACTTGTGATTCAGGGTATTGGATAGTCCGAAAACAGCGGGCACTC
. : . : . : . : . : . :
JMSF017D14+ TTTGCCTCCCAGAACCGAATAGTGTGATCATAGCTAGCTGTAGCTAGCACAACTGATGGC
JMSF045D15+ TTTGCCTCCCAGAACCGAATAGTGTGATCATAGCTAGCTGTAGCTAGCACAACTGATGGC
JMSF003D24+ TTCGCTTCCCAAAACCGAATAGTGTGATCATAGCTAGCTGTTGCAAGCACAACCGATGGT
JMSF008K02+ TTCGCTTCCCAAAACCGAATAGTGTGATCATAGCTAGCTGTTGCAAGCACAACCGATGGT
JMSF008L02+ TTCGCTTCCCAAAACCGAATAGTGTGATCATAGCTAGCTGTTGCAAGCACAACCGATGGT
____________________________________________________________
consensus TTCGCTTCCCAAAACCGAATAGTGTGATCATAGCTAGCTGTTGCAAGCACAACCGATGGT
. : . : . : . : . : . :
JMSF017D14+ TGTG
JMSF045D15+ TGTG
JMSF003D24+ TGTGTCATCTTCGATCCTTTTCTCCTATTTGTTAGTCTTAGACAGCTGCGTGGTTGTGAT
JMSF008K02+ TGTG
JMSF008L02+ TGTGTCATCTTCGATCCTTTTCTCCTATTTGTTAGTCTTAGACAGCTGCGTGGTTGTGAT
JMSF015B23+ CGTGGTTGTGAT
JMSF010M09+ ATCTTCGATCCTTTTCTCCTATTTGTTAGTCTTAGACAGCTGCGTGGTTGTGAT
____________________________________________________________
consensus TGTGTCATCTTCGATCCTTTTCTCCTATTTGTTAGTCTTAGACAGCTGCGTGGTTGTGAT
. : . : . : . : . : . :
JMSF003D24+ CATTTAGTGGCGAAGGTGGGTACTAGGGTTTTGTTTTATGGGATTTTTGTACGAGATGCA
JMSF008L02+ CATTTAGTGGCGAAGGTGGGTACTAGGGTTTTGTTTTATGGGATTTTTGTACGAGATG-A
JMSF015B23+ CATTTAGTGGCGAAGGTGGGTACTAGGGTTTTGTTTTATGGGATTTTTGTACGAGATGCA
JMSF010M09+ CATTTAGTGGCGAAGGTGGGTACTAGGGTTTTGTTTTATGGGATTTTTGTACGAGATGCA
____________________________________________________________
consensus CATTTAGTGGCGAAGGTGGGTACTAGGGTTTTGTTTTATGGGATTTTTGTACGAGATGCA
. : . : . : . : . : . :
JMSF003D24+ GAGTGATGCCGGAGGAGCGGATATATCCCATAGCAGGGAAGAAGAGAAAAGCTTAAGACT
JMSF008L02+ GAGTGATGCCGGAGGAGCGGATATATCCCATAGCAGGGAAGAAGAGAAAAGCTTAAGACT
JMSF015B23+ GAGTGATGCCGGAGGAGCGGATATATCCCATAGCAGGGAAGAAGAGAAAAGCTTAAGACT
JMSF010M09+ GAGTGATGCCGGAGGAGCGGATATATCCCATAGCAGGGAAGAAGAGAAAAGCTTAAGACT
____________________________________________________________
consensus GAGTGATGCCGGAGGAGCGGATATATCCCATAGCAGGGAAGAAGAGAAAAGCTTAAGACT
. : . : . : . : . : . :
JMSF003D24+ TGTGAACAATGCTTCAATTGCAGAGATATAGACGGCAAAACGAGGTGGTTATGGAGGTGT
JMSF008L02+ TGTGAACAATGCTTCAATTGCAGAGATATAGACGGCAAAACGAGGTGGTTATGGAGGTGT
JMSF015B23+ TGTGAACAATGCTTCAATTGCAGAGATATAGACGGCAAAACGAGGTGGTTATGGAGGTGT
JMSF010M09+ TGTGAACAATGCTTCAATTGCAGAGATATAGACGGCAAAACGAGGTGGTTATGGAGGTGT
____________________________________________________________
consensus TGTGAACAATGCTTCAATTGCAGAGATATAGACGGCAAAACGAGGTGGTTATGGAGGTGT
. : . : . : . : . : . :
JMSF003D24+ AGCGCCGCTTGGAAGGATCGGGGCGGGCGGAGGAGAGACCTCTTTGCTGAATTGCTGCTC
JMSF008L02+ AGCGCCGCTTGGAAGGATCGGGGCGGGCGGAGGAGAGACCTCTTTGCTGAATTGCTGCTC
JMSF015B23+ AGCGCCGCTTGGAAGGATCGGGGCGGGCGGAGGAGAGACCTCTTTGCTGAATTGCTGCTC
JMSF010M09+ AGCGCCGCTTGGAAGGATCGGGGCGGGCGGAGGAGAGACCTCTTTGCTGAATTGCTGCTC
____________________________________________________________
consensus AGCGCCGCTTGGAAGGATCGGGGCGGGCGGAGGAGAGACCTCTTTGCTGAATTGCTGCTC