| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF009O11 | Sequence | 269 | 004991 (8) | 718 | 004991 (8) | ref|XP_009620035.1| | 290 | PREDICTED: uncharacterized protein LOC104111915 [Nicotiana tomentosiformis] | |||
| JMSF026E08 | Sequence | 643 | 004991 (8) | ref|XP_009620035.1| | 268 | PREDICTED: uncharacterized protein LOC104111915 [Nicotiana tomentosiformis] | 750 | 004991 (8) | ref|XP_009620035.1| | 290 | PREDICTED: uncharacterized protein LOC104111915 [Nicotiana tomentosiformis] |
| JMSF034H11 | Sequence | 621 | 004991 (8) | ref|XP_009620035.1| | 268 | PREDICTED: uncharacterized protein LOC104111915 [Nicotiana tomentosiformis] | 718 | 004991 (8) | ref|XP_009620035.1| | 290 | PREDICTED: uncharacterized protein LOC104111915 [Nicotiana tomentosiformis] |
| JMSF053K15 | Sequence | 663 | 004991 (8) | ref|XP_009620035.1| | 268 | PREDICTED: uncharacterized protein LOC104111915 [Nicotiana tomentosiformis] | 742 | 004991 (8) | ref|XP_009620035.1| | 288 | PREDICTED: uncharacterized protein LOC104111915 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMSF034H11- TGTACAAATTTCATTATTCTGAT
rJMSF009O11- ACAAATTTCATTATTCTGAT
rJMSF053K15- ACAAATTTCATTATTCTGAT
rJMSF026E08- TTCTGAT
____________________________________________________________
consensus TGTACAAATTTCATTATTCTGAT
. : . : . : . : . : . :
rJMSF034H11- TTCTGATTAATAATTTTACAACAAATATTAGCTAG-TATGTAGCATCATTTCCTTCACAA
rJMSF009O11- TTCTGATTAATAATTTTACAACAAATATTAGCTAG-TATGTAGCATCATTTCCTTCACAA
rJMSF053K15- TTCTGATTAATAATTTTACAACAAATATTAGCTAGNTATGTAGCATCATTTCCTTCACAA
rJMSF026E08- TTCTGATTAATAATTTTACAACAAATATTAGCTAG-TATGTAGCATCATTTCCTTCACAA
____________________________________________________________
consensus TTCTGATTAATAATTTTACAACAAATATTAGCTAG-TATGTAGCATCATTTCCTTCACAA
. : . : . : . : . : . :
rJMSF034H11- GTCCACCATATTTAGCAGGTTTTGCCTACCTGCAAGAGTTTATATAAGATTCGATGTTTC
rJMSF009O11- GTCCACCATATTTAGCAGGTTTTGCCTACCTGCAAGAGTTTATATAAGATTCGATGTTTC
rJMSF053K15- GTCCACCATATTTAGCAGGTTTTGCCTACCTGCAAGAGTTTATATAAGATTCGATGTTTC
rJMSF026E08- GTCCACTATATTTAGCAGGTTTTGCCTACCTGCAAGAGTTTATATAAGATTCGATGTTTC
____________________________________________________________
consensus GTCCACCATATTTAGCAGGTTTTGCCTACCTGCAAGAGTTTATATAAGATTCGATGTTTC
. : . : . : . : . : . :
rJMSF034H11- CATTATAGCCGTTCTGCCAATTGCGGAAACTGTTGCAGCAGCCAAGCTACGCCTCTGATA
rJMSF009O11- CATTATAGCCGTTCTGCCAATTGCGGAAACTGTTGCAGCAGCCAAGCTACGCCTCTGATA
rJMSF053K15- CATTATAGCCGTTCTGCCAATTGCGGAAACTGTTGCAGCAGCCAAGCTACGCCTCTGATA
rJMSF026E08- CATTATAGCCGTTCTGCCAATTGCGGAAACTGTTGCAGCAGCCAAGCTACGCCTCTGATA
JMSF026E08+ TGATA
JMSF034H11+ TGATA
JMSF053K15+ CTGATA
____________________________________________________________
consensus CATTATAGCCGTTCTGCCAATTGCGGAAACTGTTGCAGCAGCCAAGCTACGCCTCTGATA
. : . : . : . : . : . :
rJMSF034H11- GCAACCAAAGCTGTCTCTCCAGGCTTGATTGCAGGTTCAACACTGTCTCTACCATATAGT
rJMSF009O11- GCAACCAAAGCTGTCTCTCCAGGCTTGATTGCAGGTTCAACACTGTCTCTACCATATAGT
rJMSF053K15- GCAACCAAAGCTGTCTCTCCAGGCTTGATTGCAGGTTCAACACTGTCTCTACCATATAGT
rJMSF026E08- GCAACCAAAGCTGTCTCTCCAGGCTTGATTGCAGGTTCAACACTGTCTCTACCATATAGT
JMSF026E08+ GCAACCAAAGCTGTCTCTCCAGGCTTGATTGCAGGTTCAACACTGTCTCTACCATATAGT
JMSF034H11+ GCAACCAAAGCTGTCTCTCCAGGCTTGATTGCAGGTTCAACACTGTCTCTACCATATAGT
JMSF053K15+ GCAACCAAAGCTGTCTCTCCAGGCTTGATTGCAGGTTCAACACTGTCTCTACCATATAGT
____________________________________________________________
consensus GCAACCAAAGCTGTCTCTCCAGGCTTGATTGCAGGTTCAACACTGTCTCTACCATATAGT
. : . : . : . : . : . :
rJMSF034H11- ATTTGCCTCTGGCCATCTACTGCTTCCAACCGATAAAAGCTACATCCTTTGCTAAAAGGA
rJMSF009O11- ATTTGCCTCTGGCCATCTACTGCTTCCAACCGATAAAAGCTACATCCTTTGCTAAAAGGA
rJMSF053K15- ATTTGCCTCTGGCCATCTACTGCTTCCAACCGATAAAAGCTACATCCTTTGCTAAAAGGA
rJMSF026E08- ATTTGCCTCTGGCCATCTACTGCTTCCAACCGATAAAAGCTACATCCTTTGCTAAAAGGA
JMSF026E08+ ATTTGCCTCTGGCCATCTACTGCTTCCAACCGATAAAAGCTACATCCTTTGCTAAAAGGA
JMSF034H11+ ATTTGCCTCTGGCCATCTACTGCTTCCAACCGATAAAAGCTACATCCTTTGCTAAAAGGA
JMSF053K15+ ATTTGCCTCTGGCCATCTACTGCTTCCAACCGATAAAAGCTACATCCTTTGCTAAAAGGA
____________________________________________________________
consensus ATTTGCCTCTGGCCATCTACTGCTTCCAACCGATAAAAGCTACATCCTTTGCTAAAAGGA
. : . : . : . : . : . :
rJMSF034H11- AATGGCCTTCCCTTCCATTCTAAGTGCCATGTGACCCCTACAGCTGAGGAATCCTCCTCT
rJMSF009O11- AATGGCCTTCCCTTCCATTCTAAGTGCCATGTGACCCCTACAGCTGAGGAATCCTCCTCT
rJMSF053K15- AATGGCCTTCCCTTCCATTCTAAGTGCCATGTGACCCCTACAGCTGAGGAATCCTCCTCT
rJMSF026E08- AATGGCCTTCCCTTCCATTCTAAGTGCCATGTGACCCCTACAGCTGAGGAATCCTCCTCT
JMSF026E08+ AATGGCCTTCCCTTCCATTCTAAGTGCCATGTGACCCCTACAGCTGAGGAATCCTCCTCT
JMSF034H11+ AATGGCCTTCCCTTCCATTCTAAGTGCCATGTGACCCCTACAGCTGAGGAATCCTCCTCT
JMSF053K15+ AATGGCCTTCCCTTCCATTCTAAGTGCCATGTGACCCCTACAGCTGAGGAATCCTCCTCT
____________________________________________________________
consensus AATGGCCTTCCCTTCCATTCTAAGTGCCATGTGACCCCTACAGCTGAGGAATCCTCCTCT
. : . : . : . : . : . :
rJMSF034H11- GATATATCATCAATCACAAATTGCAGATCAGGCCCAACAGAATCAATAAACTTCCTAAAA
rJMSF009O11- GATATATCATCAATCACAAATTGCAGATCAGGCCCAACAGAATCAATAAACTTCCTAAAA
rJMSF053K15- GATATATCATCAATCACAAATTGCAGATCAGGCCCAACAGAATCAATAAACTTCCTAAAA
rJMSF026E08- GATATATCATCAATCACAAATTGCAGATCAGGCCCAACAGAATCAATAAACTTCCTAAAA
JMSF026E08+ GATATATCATCAATCACAAATTGCAGATCAGGCCCAACAGAATCAATAAACTTCCTAAAA
JMSF034H11+ GATATATCATCAATCACAAATTGCAGATCAGGCCCAACAGAATCAATAAACTTCCTAAAA
JMSF053K15+ GATATATCATCAATCACAAATTGCAGATCAGGCCCAACAGAATCAATAAACTTCCTAAAA
____________________________________________________________
consensus GATATATCATCAATCACAAATTGCAGATCAGGCCCAACAGAATCAATAAACTTCCTAAAA
. : . : . : . : . : . :
rJMSF034H11- AATTCTAGAATGGCCTTGCGTCCAACAAAGGGCTGAGGGAATACGAGATCTTCATATACA
rJMSF009O11- AATTCTAGAATGGCCTTGCGTCCAACAAAGGGCTGAGGGAATACGAGATCTTCATATACA
rJMSF053K15- AATTCTAGAATGGCCTTGCGTCCAACAAAGGGCTGAGGGAATACGAGATCTTCATATACA
rJMSF026E08- AATTCTAGAATGGCCTTGCGTCCAACAAAGGGCTGAGGGAATACGAGATCTTCATATACA
JMSF026E08+ AATTCTAGAATGGCCTTGCGTCCAACAAAGGGCTGAGGGAATACGAGATCTTCATATACA
JMSF034H11+ AATTCTAGAATGGCCTTGCGTCCAACAAAGGGCTGAGGGAATACGAGATCTTCATATACA
JMSF053K15+ AATTCTAGAATGGCCTTGCGTCCAACAAAGGGCTGAGGGAATACGAGATCTTCATATACA
____________________________________________________________
consensus AATTCTAGAATGGCCTTGCGTCCAACAAAGGGCTGAGGGAATACGAGATCTTCATATACA
. : . : . : . : . : . :
rJMSF034H11- CAATTCTCAGCTATAAGGCCTTCAACCGAGGCCAAGTCGCGGCCATTGATACCAGAGTAG
rJMSF009O11- CAATTCTCAGCTATAAGGCCTTCAACCGAGGCCAAGTCGCGGCCATTGATACCAGAGTAG
rJMSF053K15- CAATTCTCAGCTATAAGGCCTTCAACCGAGGCCAAGTCGCGGCCATTGATACCAGAGTAG
rJMSF026E08- CAATTCTCAGCTATAAGGCCTTCAACCGAGGCCAAGTCGCGGCCATTGATACCAGAGTAG
JMSF026E08+ CAATTCTCAGCTATAAGGCCTTCAACCGAGGCCAAGTCGCGGCCATTGATACCAGAGTAG
JMSF034H11+ CAATTCTCAGCTATAAGGCCTTCAACCGAGGCCAAGTCGCGGCCATTGATACCAGAGTAG
JMSF053K15+ CAATTCTCAGCTATAAGGCCTTCAACCGAGGCCAAGTCGCGGCCATTGATACCAGAGTAG
____________________________________________________________
consensus CAATTCTCAGCTATAAGGCCTTCAACCGAGGCCAAGTCGCGGCCATTGATACCAGAGTAG
. : . : . : . : . : . :
rJMSF034H11- AATTTCCTCACCACGCTCGACGCCGATTCCAACTCATCAGTGATGATAGTAGGAGCAGTA
rJMSF009O11- AATTTCCTCACCACGCTCGACGCCGATTCCAACTCATCAGTGATGATAGTAGGAGCAGTA
rJMSF053K15- AATTTCCTCACCACGCTCGACGCCGATTCCAACTCATCAGTGATGATAGTAGGAGCAGTA
rJMSF026E08- AATTTCCTCACCACGCTCGACGCCGATTCCAACTCATCAGTGATGATAGTAGGAGCAGTA
JMSF026E08+ AATTTCCTCACCACGCTCGACGCCGATTCCAACTCATCAGTGATGATAGTAGGAGCAGTA
JMSF034H11+ AATTTCCTCACCACGCTCGACGCCGATTCCAACTCATCAGTGATGATAGTAGGAGCAGTA
JMSF053K15+ AATTTCCTCACCACGCTCGACGCCGATTCCAACTCATCAGTGATGATAGTAGGAGCAGTA
JMSF009O11+ ACTCATCAGTGATGATAGTAGGAGCAGTA
____________________________________________________________
consensus AATTTCCTCACCACGCTCGACGCCGATTCCAACTCATCAGTGATGATAGTAGGAGCAGTA
. : . : . : . : . : . :
rJMSF034H11- GACACAGAGGAAGCGGGGGTTAGCACCGCCCCCTGATTGCGGTACCGCACAATCGACTTA
rJMSF009O11- GACACAGAGGAAGCGGGGGTTAGCACCGCCCCCTGATTGCGGTACCGCACAATCGACTTA
rJMSF053K15- NACACAGAGGAAGCGGGGGTTAGCACCGCCCCCTGATTGCGGTACCGCACAATCGACTTA
rJMSF026E08- GACACAGAGGAAGCGGGGGTTAGCACCGCCCCCTGATTGCGGTACCGCACAATCGACTTA
JMSF026E08+ GACACAGAGGAAGCGGGGGTTAGCACCGCCCCCTGATTGCGGTACCGCACAATCGACTTA
JMSF034H11+ GACACAGAGGAAGCGGGGGTTAGCACCGCCCCCTGATTGCGGTACCGCACAATCGACTTA
JMSF053K15+ GACACAGAGGAAGCGGGGGTTAGCACCGCCCCCTGATTGCGGTACCGCACAATCGACTTA
JMSF009O11+ GACACAGAGGAAGCGGGGGTTAGCACCGCCCCCTGATTGCGGTACCGCACAATCGACTTA
____________________________________________________________
consensus GACACAGAGGAAGCGGGGGTTAGCACCGCCCCCTGATTGCGGTACCGCACAATCGACTTA
. : . : . : . : . : . :
rJMSF034H11- GCTACTGGACGGCAGAACTCGCCGGCTCTATCAGCA
rJMSF009O11- GCTACTGGACGGCAGAACTCGCCGGCTCTATCAGCACGG
rJMSF053K15- NCTACTGGACGGCAGAACTCGCCGGCTCTATCAGCACGGGGAAAAAAACCGCCACCGCCG
rJMSF026E08- GCTACTGGACGGCAGAACTCGCCGGCTCTATCAGCACGGGGAAAAAAACCGCCACCGCCG
JMSF026E08+ GCTACTGGACGGCAGAACTCGCCGGCTCTATCAGCACGGGGAAAAAAACCGCCACCGCCG
JMSF034H11+ GCTACTGGACGGCAGAACTCGCCGGCTCTATCAGCACGGGGAAAAAAACCGCCACCGCCG
JMSF053K15+ GCTACTGGACGGCAGAACTCGCCGGCTCTATCAGCACGGGGAAAAAAACCGCCACCGCCG
JMSF009O11+ GCTACTGGACGGCAGAACTCGCCGGCTCTATCAGCACGGGGAAAAAAACCGCCACCGCCG
____________________________________________________________
consensus GCTACTGGACGGCAGAACTCGCCGGCTCTATCAGCACGGGGAAAAAAACCGCCACCGCCG
. : . : . : . : . : . :
rJMSF026E08- GCAGTAGTGGAGAGGTTTGCTTTG
JMSF026E08+ GCAGTAGTGGAGAGGTTTGCTTTGGGAGGACGAAGGGAGAAAGATGGGACGGAAGTCGTC
JMSF034H11+ GCAGTAGTGGAGAGGTTTGCTTTGGGAGGACGAAGGGAGAAAGATGGGACGGAAGTCGTC
JMSF053K15+ GCAGTAGTGGAGAGGTTTGCTTTGGGAGGACGAAGGGAGAAAGATGGGACGGAAGTCGTC
JMSF009O11+ GCAGTAGTGGAGAGGTTTGCTTTGGGAGGACGAAGGGAGAAAGATGGGACGGAAGTCGTC
____________________________________________________________
consensus GCAGTAGTGGAGAGGTTTGCTTTGGGAGGACGAAGGGAGAAAGATGGGACGGAAGTCGTC
. : . : . : . : . : . :
JMSF026E08+ AGCATCGCCATAGCTGAACCTTCTCGAGGGTGAAC
JMSF034H11+ AGCATCGCCATAGCT
JMSF053K15+ AGCATCGCCATAGCTGAACCTTCTCGAGGGTGAACCCAATGGCGCGAATAATAACC
JMSF009O11+ AGCATCGCCATAGCTGAACCTTCTCGAGGGTGAACCCAATGGCGCGAATAATAACCGCCC
____________________________________________________________
consensus AGCATCGCCATAGCTGAACCTTCTCGAGGGTGAACCCAATGGCGCGAATAATAACCGCCC