clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF016K17 | Sequence | 597 | 004984 (6) | emb|CDP18531.1| | 1e-84 | unnamed protein product [Coffea canephora] | 768 | 004984 (6) | ref|XP_010057240.1| | 5e-125 | PREDICTED: 40S ribosomal protein S2-4-like [Eucalyptus grandis] gb|KCW90198.1| h |
JMSF004M05 | Sequence | 387 | 015656 | ref|XP_009772597.1| | 9e-60 | PREDICTED: transcription factor TGA2-like isoform X3 [Nicotiana sylvestris] | 258 | 004984 (6) | ref|XP_011069984.1| | 5e-11 | PREDICTED: 40S ribosomal protein S2-4-like [Sesamum indicum] |
JMSF004O07 | Sequence | 238 | 004984 (6) | gb|KEH40624.1| | 3e-11 | 40S ribosomal protein S2-4 [Medicago truncatula] | |||||
JMSF008N07 | Sequence | 239 | 004984 (6) | gb|KEH40624.1| | 3e-12 | 40S ribosomal protein S2-4 [Medicago truncatula] | 718 | 004984 (6) | ref|XP_010057240.1| | 3e-132 | PREDICTED: 40S ribosomal protein S2-4-like [Eucalyptus grandis] gb|KCW90198.1| h |
This contig is upended
. : . : . : . : . : . :
rJMSF004M05- CAAAAGATAA
____________________________________________________________
consensus CAAAAGATAA
. : . : . : . : . : . :
rJMSF004M05- GAGAACCGGAGTTTATATAAGGAGAAATAAATGGATCAAAATTCCTTAAAATCTNTTAAA
____________________________________________________________
consensus GAGAACCGGAGTTTATATAAGGAGAAATAAATGGATCAAAATTCCTTAAAATCTNTTAAA
. : . : . : . : . : . :
rJMSF004M05- CAAANATTTCCTAGGTAGAAAAGTCCTAGCATAAAACCNTGCTTATGCATCAACCTTTTC
rJMFF016K17- GCTTATGCATCAACCTTTTC
rJMSF008N07- GCTTATGCATCAACCTTTTC
____________________________________________________________
consensus CAAANATTTCCTAGGTAGAAAAGTCCTAGCATAAAACCNTGCTTATGCATCAACCTTTTC
. : . : . : . : . : . :
rJMSF004M05- AGCAACCTCCTCAATTTGGACAAACTTGGTGGTNGGCTTGGCTAAGATATCGGNATACNC
rJMFF016K17- AGCAACCTCCTCAATTTGGACAAACTTGGTGGTTGGCTTGGCTAAGATATCGGTATACTC
rJMSF008N07- AGCAACCTCCTCAATTTGGACAAACTTGGTGGTTGGCTTGGCTAAGATATCGGTATACTC
____________________________________________________________
consensus AGCAACCTCCTCAATTTGGACAAACTTGGTGGTTGGCTTGGCTAAGATATCGGTATACTC
. : . : . : . : . : . :
rJMSF004M05- TTCGAATGGAGATTTTATGAAGCGAGTCTCCTTCCAAAAGTCNGGCGTAAGGNACCCATA
rJMFF016K17- TTCGAATGGAGATTTTATGAAGCGAGTCTCCTTCCAAAAGTCTGGCGTAAGGAACCCATA
rJMSF008N07- TTCGAATGGAGATTTTATGAAGCGAGTCTCCTTCCAAAAGTCTGGCGTAAGGAACCCATA
____________________________________________________________
consensus TTCGAATGGAGATTTTATGAAGCGAGTCTCCTTCCAAAAGTCTGGCGTAAGGAACCCATA
. : . : . : . : . : . :
rJMSF004M05- TGTCTTCA
rJMFF016K17- TGTCTTCATAAGACAATCAAACGTTGCCTTAACAAAGTTTCCAAGGGTTTTAGTAGAGCC
rJMSF008N07- TGTCTTCATAAGACAATCAAACGTTGCCTTAACAAAGTTTCCAAGGGTTTTAGTAGAGCC
____________________________________________________________
consensus TGTCTTCATAAGACAATCAAACGTTGCCTTAACAAAGTTTCCAAGGGTTTTAGTAGAGCC
. : . : . : . : . : . :
rJMFF016K17- ACGGGAAGAGGTGAAGACATCCTCAATACCAGCAAACTGGAGCACCTTCTTAGGAACCCT
rJMSF008N07- ACGGGAAGAGGTGAAGACATCCTCAATACCAGCAAACTGGAGCACCTTCTTAGGAACCCT
____________________________________________________________
consensus ACGGGAAGAGGTGAAGACATCCTCAATACCAGCAAACTGGAGCACCTTCTTAGGAACCCT
. : . : . : . : . : . :
rJMFF016K17- AGCAGCAACAATTCCAGCACCACGGGGAGCCGGGACCATCCGGACGGTAACTGAACCGCA
rJMSF008N07- AGCAGCAACAATTCCAGCACCACGGGGAGCCGGGACCATCCGGACGGTAACTGAACCGCA
JMFF016K17+ ACAATTCCAGCACCACGGGGAGCCGGGACCATCCGGACGGTAACTGAACCGCA
____________________________________________________________
consensus AGCAGCAACAATTCCAGCACCACGGGGAGCCGGGACCATCCGGACGGTAACTGAACCGCA
. : . : . : . : . : . :
rJMFF016K17- CTTT-CCGGTGACCTTGCAAGGCACAGTGTGAGGCTTCCCAATCTTGTTCCCCCAGTAAC
rJMSF008N07- CTTT-CCGGTGACCTTGCAAGGCACAGTGTGAGGCTTCCCAATCTTGTTCCCCCAGTAAC
JMFF016K17+ CTTTCCCGGTGACCTTGCAAGGCACAGTGTGAGGCTTCCCAATCTTGTTCCCCCAGTAAC
____________________________________________________________
consensus CTTT-CCGGTGACCTTGCAAGGCACAGTGTGAGGCTTCCCAATCTTGTTCCCCCAGTAAC
. : . : . : . : . : . :
rJMFF016K17- CTCTCCTCACGGGAACCACAGACAGCTTAGCCAATATAATGGAGCCGCGAATGGCAGTGG
rJMSF008N07- CTCTCCTCACGGGAACCACAGACAGCTTAGCCAATATAATGGAGCCGCGAATGGCAGTGG
JMFF016K17+ CTCTCCTCACGGGAACCACAGACAGCTTAGCCAATATAATGGAGCCGCGAATGGCAGTGG
____________________________________________________________
consensus CTCTCCTCACGGGAACCACAGACAGCTTAGCCAATATAATGGAGCCGCGAATGGCAGTGG
. : . : . : . : . : . :
rJMFF016K17- CGACTTCCTTGGAGCACTTCACGCCGAGCCCGACATGGCCATTGCCGTCGCCGACGACCA
rJMSF008N07- CGACTTCCTTGGAGCACTTCACGCCGAGCCCGACATGGCCATTGCCGTCGCCGACGACCA
JMFF016K17+ CGACTTCCTTGGAGCACTTCACGCCGAGCCCGACATGGCCATTGCCGTCGCCGACGACCA
____________________________________________________________
consensus CGACTTCCTTGGAGCACTTCACGCCGAGCCCGACATGGCCATTGCCGTCGCCGACGACCA
. : . : . : . : . : . :
rJMFF016K17- CGAATGCCTTGAACCGGGTCCTCTGCCCTGCCCGAGTCTGTTTCTGGACAGGCATGATTT
rJMSF008N07- CGAATGCCTTGGACCGGGTCCTCTGCCCTGCCAGAGTCTGTTTCTGGACAGGCATGATTT
JMFF016K17+ CGAATGCCTTGAACCGGGTCCTCTGCCCTGCCCGAGTCTGTTTCTGGACAGGCATGATTT
____________________________________________________________
consensus CGAATGCCTTGAACCGGGTCCTCTGCCCTGCCCGAGTCTGTTTCTGGACAGGCATGATTT
. : . : . : . : . : . :
rJMFF016K17- TCATGACCTTATCCTTGAGAGATGGCCCGACAAG
rJMSF008N07- TCATGACCTCATCCTTGAGAGATGGCCCGACAAGAGTATCGATGATTTGATACTCCTTGA
JMFF016K17+ TCATGACCTTATCCTTGAGAGATGGCCCGACAAGAGTATCGATGATTTGATACTCCTTGA
____________________________________________________________
consensus TCATGACCTTATCCTTGAGAGATGGCCCGACAAGAGTATCGATGATTTGATACTCCTTGA
. : . : . : . : . : . :
rJMSF008N07- TGGGAAG
JMFF016K17+ TGGGAAGAGAGTGGAGGTAGATCTGCTCCAAAGATCGTATCTTGCCTTCCTTCACAAGAC
JMSF004O07+ TGGAGGTAGATTTGCTCCAAAGATCGTATCTTGCCTTCCTTCACAAGAC
JMSF008N07+ AAGAGAGTGGAGGTAGATCTGCTCCAAAGATCGTATCTTGCCTTCCTTCACAAGAC
____________________________________________________________
consensus TGGGAAGAGAGTGGAGGTAGATCTGCTCCAAAGATCGTATCTTGCCTTCCTTCACAAGAC
. : . : . : . : . : . :
JMFF016K17+ GTCCCAGCTTGGTAACCGGAACCCACTTCTCCTCCTCGGTGTCACGGCGACCTCGGCGAC
JMSF004O07+ GTCCCAGCTTGGTAACCGGAACCCACTTCTCCTCCTCGGTGTCACGGCGACCTCGGCGAC
JMSF008N07+ GTCCCAGCTTGGTAACCGGAACCCACTTCTCCTCCTCGGTGTCACGGCGACCTCGGCGAC
____________________________________________________________
consensus GTCCCAGCTTGGTAACCGGAACCCACTTCTCCTCCTCGGTGTCACGGCGACCTCGGCGAC
. : . : . : . : . : . :
JMFF016K17+ CACCGCGGCCTCTTCCTCCACGGTCTCCGCCGCGCCCTCGTCCCCCAAAACCGCGCCCAA
JMSF004O07+ CACCGCGGCCTCTTCCTCCACGGTC
JMSF008N07+ CACCGCGGCCTCTTCCTCCACGGTCTCCGCCGCGCCCTCGTCCCCCAAAACCGCGCCCAA
____________________________________________________________
consensus CACCGCGGCCTCTTCCTCCACGGTCTCCGCCGCGCCCTCGTCCCCCAAAACCGCGCCCAA
. : . : . : . : . : . :
JMFF016K17+ ATCCTCCTCTCTCAGCCATGCT
JMSF008N07+ ATCCTCCTCTCTCAGCCATGCTTAGGGTTCGGGTTTTCGCGCAACTGCACAACTGAGCTC
____________________________________________________________
consensus ATCCTCCTCTCTCAGCCATGCTTAGGGTTCGGGTTTTCGCGCAACTGCACAACTGAGCTC