| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002I12 | Sequence | 588 | 004977 (9) | ref|XP_009784046.1| | 3e-20 | PREDICTED: protein IRX15-LIKE-like [Nicotiana sylvestris] | 670 | 004977 (9) | ref|XP_009784046.1| | 1e-86 | PREDICTED: protein IRX15-LIKE-like [Nicotiana sylvestris] |
| JMFF016C11 | Sequence | 486 | 004977 (9) | ref|XP_009784046.1| | 2e-07 | PREDICTED: protein IRX15-LIKE-like [Nicotiana sylvestris] | 793 | 004977 (9) | ref|XP_009784046.1| | 3e-110 | PREDICTED: protein IRX15-LIKE-like [Nicotiana sylvestris] |
| JMSF002A12 | Sequence | 214 | 004977 (9) | 748 | 004977 (9) | ref|XP_009784046.1| | 8e-107 | PREDICTED: protein IRX15-LIKE-like [Nicotiana sylvestris] | |||
| JMSF008B12 | Sequence | 199 | 004977 (9) | 654 | 019229 | emb|CDP09177.1| | 7e-83 | unnamed protein product [Coffea canephora] | |||
| JMSF034D17 | Sequence | 510 | 004977 (9) | ref|XP_009784046.1| | 1e-08 | PREDICTED: protein IRX15-LIKE-like [Nicotiana sylvestris] | 682 | 004977 (9) | ref|XP_009784046.1| | 8e-85 | PREDICTED: protein IRX15-LIKE-like [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMFF002I12- CTTGAAGAGCTCTAAAATCTTACAGATTTTGCTATATATAGAGATTATATAATA
rJMSF034D17- AATCTTACAGATTTTGCTATATNTAGAGATNATATAATA
rJMSF002A12- AATCTTACAGATTTTGCTATATATAGAGATTATATAATA
rJMFF016C11- CTTGAAGAGCTCTANAATCTTACAGATTTTGCTATATATAGAGATTATATAATA
____________________________________________________________
consensus CTTGAAGAGCTCTAAAATCTTACAGATTTTGCTATATATAGAGATTATATAATA
. : . : . : . : . : . :
rJMFF002I12- A-TATGATAATAAAAAGTAAAAAAGAAAGAAAAAAATAGAGAAAGTAGAAATGATCACTG
rJMSF034D17- AGTATGATAATANAAAGTAAAAAAGANAGAAAAAAATAGAGAAAGTAGAAATGATCACTG
rJMSF002A12- A-TATGATAATAAAAAGTAAAAAAGAAAGAAAAAAATAGAGAAAGTAGAAATGATCACTG
rJMFF016C11- A-TATGATAATAAAAAGTAAAAAAGAAAGAAAAAAATAGAGAAAGTAGAAATGATCACTG
____________________________________________________________
consensus A-TATGATAATAAAAAGTAAAAAAGAAAGAAAAAAATAGAGAAAGTAGAAATGATCACTG
. : . : . : . : . : . :
rJMFF002I12- TGTTGCAGTGGTTCACTGATCCGCCATCGATGGTTTTGATGAAGAAGACGAAGACGATTC
rJMSF034D17- TGTTGCAGTGGTTCACTGATCCGCCATCGATGGTTTTGATGAAGAAGACGAAGACGATTC
rJMSF002A12- TGTTGCAGTGGTTCACTGATCCGCCATCGATGGTTTTGATGAAGAAGACGAAGACGATTC
rJMFF016C11- TGTTGCAGTGGTTCACTGATCCGCCATCGATGGTTTTGATGAAGAAGACGAAGACGATTC
____________________________________________________________
consensus TGTTGCAGTGGTTCACTGATCCGCCATCGATGGTTTTGATGAAGAAGACGAAGACGATTC
. : . : . : . : . : . :
rJMFF002I12- GGACTTTGAACAGAATTTGTAGTCGTTAGGTTTCAGTTTTCCGACCACGAAATGCCCCAA
rJMSF034D17- GGACTTTGAACAGAATTTGTAGTCGTTAGGTTTCAGTTTTCCGACCACGAAATGCCCCAA
rJMSF002A12- GGACTTTGAACAGAATTTGTAGTCGTTAGGTTTCAGTTTTCCGACCACGAAATGCCCCAA
rJMFF016C11- GGACTTTGAACAGAATTTGTAGTCGTTAGGTTTCAGTTTTCCGACCACGAAATGCCCCAA
____________________________________________________________
consensus GGACTTTGAACAGAATTTGTAGTCGTTAGGTTTCAGTTTTCCGACCACGAAATGCCCCAA
. : . : . : . : . : . :
rJMFF002I12- AGAATCCACGGAATCTACAATGTTGTCCCGGCAAAGGAATCTCTCACTGGTTACTCTCTC
rJMSF034D17- AGAATCCACGGAATCTACAATGTTGTCCCGGCAAAGGAATCTCTCACTGGTTACTCTCTC
rJMSF002A12- AGAATCCACGGAATCTACAATGTTGTCCCGGCAAAGGAATCTCTCACTGGTTACTCTCTC
rJMFF016C11- AGAATCCACGGAATCTACAATGTTGTCCCGGCAAAGGAATCTCTCACTGGTTACTCTCTC
____________________________________________________________
consensus AGAATCCACGGAATCTACAATGTTGTCCCGGCAAAGGAATCTCTCACTGGTTACTCTCTC
. : . : . : . : . : . :
rJMFF002I12- CACCTCTCTGTCAATCTCGTGCACAAACACGTGCGTCTTTGAGGCGCCGCCGGGTTTGCT
rJMSF034D17- CACCTCTCTGTCAATCTCGTGCACAAACACGTGCGTCTTTGAGGCGCCGCCGGGTTTGCT
rJMSF002A12- CACCTCTCTGTCAATCTCGTGCACAAACACGTGCGTCTTTGAGGCGCCGCCGGGTTTGCT
rJMFF016C11- CACCTCTCTGTCAATCTCGTGCACAAACACGTGCGTCTTTGAGGCGCCGCCGGGTTTGCT
____________________________________________________________
consensus CACCTCTCTGTCAATCTCGTGCACAAACACGTGCGTCTTTGAGGCGCCGCCGGGTTTGCT
. : . : . : . : . : . :
rJMFF002I12- CCGGGCCAACACGCCGGCGGTGAAAATCGGCGACATTCTCCCCGGCGCGGAAGGCAAGTA
rJMSF034D17- CCGGGCCAACACGCCGGCGGTGAAAATCGGCGACATTCTCCCCGGCGCGGAAGGCAAGTA
rJMSF002A12- CCGGGCCAACACGCCGGCGGTGAAAATCGGCGACATTCTCCCCGGCGCGGAAGGCAAGTA
rJMFF016C11- CCGGGCCAACACGCCGGCGGTGAAAATCGGCGACATTCTCCCCGGCGCGGAAGGCAAGTA
____________________________________________________________
consensus CCGGGCCAACACGCCGGCGGTGAAAATCGGCGACATTCTCCCCGGCGCGGAAGGCAAGTA
. : . : . : . : . : . :
rJMFF002I12- CCCGCGTGGCCCGTCGATTAAAATGACGTCCCAAGCGACGTCGTAAATGTGGTTGGGGAG
rJMSF034D17- CCCGCGTGGCCCGTCGATTAAAATGACGTCCCAAGCGACGTCNTAAATGTGGTTGGGGAG
rJMSF002A12- CCCGCGTGGCCCGTCGATTAAAATGACGTCCCAAGCGACGTCGTAAATGTGGTTGGGGAG
rJMFF016C11- CCCGCGTGGCCCGTCGATTAAAATGACGTCCCAAGCGACGTCGTAAATGTGGTTGGGGAG
____________________________________________________________
consensus CCCGCGTGGCCCGTCGATTAAAATGACGTCCCAAGCGACGTCGTAAATGTGGTTGGGGAG
. : . : . : . : . : . :
rJMFF002I12- ATCGTTGATGGCCAATTTGCAGTCGGAGAAGAGAAGATTCTGCACCGGCCGGCACTCTTT
rJMSF034D17- ATCGTTGATGGCCAATTTGCAGTCGGAGAAGAGAAGATTCTGCACCGGCCGGCACTCTTT
rJMSF002A12- ATCGTTGATGGCCAATTTGCAGTCGGAGAAGAGAAGATTCTGCACCGGCCGGCACTCTTT
rJMFF016C11- ATCGTTGATGGCCAATTTGCAGTCGGAGAAGAGAAGATTCTGCACCGGCCGGCACTCTTT
____________________________________________________________
consensus ATCGTTGATGGCCAATTTGCAGTCGGAGAAGAGAAGATTCTGCACCGGCCGGCACTCTTT
. : . : . : . : . : . :
rJMFF002I12- CTTGAGCTGTTCTTTAGCGTGTTCCAATAAATCGTAAAGCTCGCTAACTTTCGTCGTGAA
rJMSF034D17- CTTGAGCTGTTCTTTANCGTGTTCCAATAAATCGTAAAGCTCGCTAACTTTCGTCGTGAA
rJMSF002A12- CTTGAGCTGTTCTTTAGCGTGTTCCAATAAATCGTAAAGCTCGCTAACTTTCGTCGTGAA
rJMFF016C11- CTTGAGCTGTTCTTTAGCGTGTTCCAATAAATCGTAAAGCTCGCTAACTTTCGTCGTGAA
____________________________________________________________
consensus CTTGAGCTGTTCTTTAGCGTGTTCCAATAAATCGTAAAGCTCGCTAACTTTCGTCGTGAA
. : . : . : . : . : . :
rJMFF002I12- CTGAACATCGTACGCTTCGATCCCAGGTTGTCTCTCTTCCACTTTCGACACCTTATACGC
rJMSF034D17- CTGAACATCGTACGCTTCGATCCCAGGTTGTCTCTCTTCCACTTTCGACACCTTATACGC
rJMSF002A12- CTGAACATCGTACGCTTCGATCCCAGGTTGTCTCTCTTCCACTTTCGACACCTTATACGC
rJMFF016C11- CTGAACATCGTACGCTTCGATCCCAGGTTGTCTCTCTTCCACTTTCGACACCTTATACGC
____________________________________________________________
consensus CTGAACATCGTACGCTTCGATCCCAGGTTGTCTCTCTTCCACTTTCGACACCTTATACGC
. : . : . : . : . : . :
rJMFF002I12- GCTCTCGTCGACGAAAA
rJMSF034D17- GCTCTCGTCGACGAAAACCGTCCGGCCGTTATGGTTCAGAGAA
rJMSF002A12- GCTCTCGTCGACGAAAACCGTCCGGCCGTTATGGTTCAGAGAACGCCACAGAAGGGTCTC
rJMFF016C11- GCTCTCGTCGACGAAAACCGTCCGGCCGTTATGGTTCAGAGAACGCCACAGAAGGGTCTC
____________________________________________________________
consensus GCTCTCGTCGACGAAAACCGTCCGGCCGTTATGGTTCAGAGAACGCCACAGAAGGGTCTC
. : . : . : . : . : . :
rJMSF002A12- GTGGGTCAGCCCGAAAACGAGAACATTGCATGCGTTTCCGCAGCGGCGG
rJMFF016C11- GTGGGTCAGCCCGAAAACGAGAACATTGCATGCGTTTCCGCAGCGGCGGAGCGTCGCCGC
JMFF002I12+ CCGAAAACGAGAACATTGCATGCGTTTCCGCAGCGGCGGAGCGTCGCCGC
____________________________________________________________
consensus GTGGGTCAGCCCGAAAACGAGAACATTGCATGCGTTTCCGCAGCGGCGGAGCGTCGCCGC
. : . : . : . : . : . :
rJMFF016C11- CACGGNGCTCACCTCCGCGG
JMFF016C11+ TTAACCGTGGC
JMSF034D17+ GACATTCGAGAAGCCACCGCCGTGGTATTAACCGTGGC
JMFF002I12+ CACGGCGCTCACCTCCGCGGCCGACATTCGAGAAGCCACCGCCGTGGTATTAACCGTGGC
____________________________________________________________
consensus CACGGCGCTCACCTCCGCGGCCGACATTCGAGAAGCCACCGCCGTGGTATTAACCGTGGC
. : . : . : . : . : . :
JMFF016C11+ GTAATGCACAAGCGCGTCGAACACCGGCTCCGGCAACTCAGGCCTCGCCGACGACCCCCC
JMSF034D17+ GTAATGCACAAGCGCGTCGAACACCGGCTCCGGCAACTCAGGCCTNGCCGACGACCCCCC
JMFF002I12+ GTAATGCACAAGCGCGTCGAACACCGGCTCCGGCAACTCAGGCCTCGCCGACGACCCCCC
____________________________________________________________
consensus GTAATGCACAAGCGCGTCGAACACCGGCTCCGGCAACTCAGGCCTCGCCGACGACCCCCC
. : . : . : . : . : . :
JMFF016C11+ GCCGCTTCCCGCCGGCGGCACGGCGTCTCTGCCGGAGAAGAAACTCAGGGCAAACGCAAA
JMSF034D17+ GCCGCTTCCCGCCGGCGGCNCGGCGTCTCTGCNGGAGAAGAAACTCAGGGCAAACGCAAA
JMFF002I12+ GCCGCTTCCCGCCGGCGGCACGGCGTCTCTGCCGGAGAAGAAACTCAGGGCAAACGCAAA
____________________________________________________________
consensus GCCGCTTCCCGCCGGCGGCACGGCGTCTCTGCCGGAGAAGAAACTCAGGGCAAACGCAAA
. : . : . : . : . : . :
JMFF016C11+ AGCGAAGAATGAGACGAAAACGAGGAGCAGAACACGAGGAGACGCCGCCGGCATAATTCC
JMSF002A12+ AGGAGCAGAACACGAGGAGACGCCGCCGGCATAATTCC
JMSF034D17+ AGCGAAGAATGAGACGAAAACGAGGAGCAGAACACGAGGAGACGCCGCCGGCATAATTCC
JMFF002I12+ AGCGAAGAATGAGACGAAAACGAGGAGCAGAACACGAGGAGACGCCGCCGGCATAATTCC
____________________________________________________________
consensus AGCGAAGAATGAGACGAAAACGAGGAGCAGAACACGAGGAGACGCCGCCGGCATAATTCC
. : . : . : . : . : . :
JMFF016C11+ CAGACCCTGTTTTTGCAGAGAAGGGTGGAAAACTATGAGCTTTGCTCCGTTCTTCATTCT
JMSF002A12+ CAGACCCTGTTTTTGCAGAGAAGGGTGGAAAACTATGAGCTTTGCTCCGTTCTTCATTCT
JMSF034D17+ CAGACCCTGTTTTTGCAGAGAAGGGTGGAAAACTATGAGCTTTGCTCCGTTCTTCATTCT
JMFF002I12+ CAGACCCTGTTTTTGCAGAGAAGGGTGGAAAACTATGAGCTTTGCTCCGTTCTTCATTCT
____________________________________________________________
consensus CAGACCCTGTTTTTGCAGAGAAGGGTGGAAAACTATGAGCTTTGCTCCGTTCTTCATTCT
. : . : . : . : . : . :
JMFF016C11+ CCTTCCTCTGAACAAGAGAGAGAAAATGGCGAAGTCCAAGAGTGAAGAGAGAGAGAGAGA
JMSF002A12+ CCTTCCTCTGAACAAGAGAGAGAAAATGGCGAAGTCCAAGAGTGAAGAGAGAGAGAGAGA
JMSF034D17+ CCTTCCTCTGAACAAGAGAGAGAAAATGGCGAAGTCCAAGAGTGAAGAGAGAGAGAGAGA
JMFF002I12+ CCTTCCTCTGAACAAGAGAGAGAAAATGGCGAAGTCCAAGAGTGAAGAGAGAGAGAGAGA
JMSF008B12+ GTGATGAGAGAGAGAGAGA
____________________________________________________________
consensus CCTTCCTCTGAACAAGAGAGAGAAAATGGCGAAGTCCAAGAGTGAAGAGAGAGAGAGAGA
. : . : . : . : . : . :
JMFF016C11+ ACAGAAACCCACAAAACACAACGAAATCCCACTTCAAAGATTCAATCTTTCACTCAAATG
JMSF002A12+ ACAGAAACCCACAAAACACAACGAAATCCCACTTCAAAGATTCAATCTTTCACT
JMSF034D17+ ACAGAAACCCACAAAACACAACGAAATCCCACTTCAAAGATTCAATCTTTCACTC-AATG
JMFF002I12+ ACAGAAACCCACAAAACACAACGAAATCCCACTTCAAAGATTCAATCTTTCACTCAAATG
JMSF008B12+ ACAGAAACCCACAAAACACANCGAAATCCCACTTCAAAGATTCAATCTTTCACTCAAATG
____________________________________________________________
consensus ACAGAAACCCACAAAACACAACGAAATCCCACTTCAAAGATTCAATCTTTCACTCAAATG
. : . : . : . : . : . :
JMFF016C11+ GAGGTCAAAGAAGAACAGAGAAAAAGGGAGGAATTACGGAGGGACTTTCGGGTACCGAGT
JMSF034D17+ GAGGTCAAAGAAGAACAGAGAAAAAGGGAGGAATTACGGAGGGACTTTCGGGTACCGAGT
JMFF002I12+ GAGGTCAAAGAAGAACAGAGAAAAAGGGAGGAATTACGGAGGGACTTTCGGGTACCGAGT
JMSF008B12+ GAGGTCAAAGAAGAACAGAGAAAAAGGGAGGAATTACGGAGGGACTTTCGGGTACCGAGT
____________________________________________________________
consensus GAGGTCAAAGAAGAACAGAGAAAAAGGGAGGAATTACGGAGGGACTTTCGGGTACCGAGT
. : . : . : . : . : . :
JMFF016C11+ CGACTCACAGAATTACCTTTTCTTCTTTCAAAATTCAAACAGCACAGCAACC
JMSF034D17+ CGACTCACAGAATTACCTTTTCTTCTTTCAAAATTCAAACAGCACAGCAACC
JMFF002I12+ CGACTCACAGAATTACCTTTTCTTCTTTCAAAATTCAAACAGCACAGCAACC
JMSF008B12+ CGACTCACAGAATTACCTTTTCTTCTTTCAAAATTCAAACAGCACAGCAACCAATGGCCC
____________________________________________________________
consensus CGACTCACAGAATTACCTTTTCTTCTTTCAAAATTCAAACAGCACAGCAACCAATGGCCC