Contig 004945:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014A04Sequence589004945 (6)ref|XP_009630916.1|3e-32PREDICTED: ferredoxin-thioredoxin reductase, variable chain-like [Nicotiana tom649004945 (6)ref|XP_009630916.1|1e-41PREDICTED: ferredoxin-thioredoxin reductase, variable chain-like [Nicotiana tom
JMFF014B04Sequence549004945 (6)ref|XP_009630916.1|3e-39PREDICTED: ferredoxin-thioredoxin reductase, variable chain-like [Nicotiana tom
JMFN038D24Sequence608004945 (6)ref|XP_009630916.1|1e-41PREDICTED: ferredoxin-thioredoxin reductase, variable chain-like [Nicotiana tom
JMSF005A06Sequence268004945 (6)
JMSF005A08Sequence244002063 (3)334004945 (6)ref|XP_004229646.1|5e-22PREDICTED: ferredoxin-thioredoxin reductase, variable chain-like [Solanum lycop

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF014A04- AAGCATTTC
                      ____________________________________________________________
consensus AAGCATTTC
 
. : . : . : . : . : . :
JMFN038D24+ TTACAAAAATTATTTCCATTAC
JMFF014A04+ TCCATTAC
rJMFF014B04- CTTCGTATCTACAAATCACAAACAGTCACAGTACATGTTACAAAAATTATTTCCATTAC
rJMSF005A08- TTACAAANATTATTTCCATTAC
rJMFF014A04- ACTTCGTATCTACAAATCACAAACAGTCACAGTACATGTTACAAAAATTATTTCCATTAC
                      ____________________________________________________________
consensus ACTTCGTATCTACAAATCACAAACAGTCACAGTACATGTTACAAAAATTATTTCCATTAC
 
. : . : . : . : . : . :
JMFN038D24+ AAA-GTATTTCAGGGAAAGCATCACTGAGAACGTGAATCATCATCATCATCATCATCAAG
JMFF014A04+ AAA-GTATTTCAGGGAAAGCATCACTGAGAACGTGAATCATCATCATCATCATCATCAAG
rJMFF014B04- AAA-GTATTTCAGGGAAAGCATCACTGAGAACGTGAATCATCATCATCATCATCATCAAG
rJMSF005A08- AAAGGTATTTCAGGGAAAGCATCACTGAGAACGTGAATCANCATCATCATCATCATCAAG
rJMFF014A04- AAA-GTATTTCAGGGAAAGCATCACTGAGAACGTGAATCATCATCATCATCATCATCAAG
                      ____________________________________________________________
consensus AAA-GTATTTCAGGGAAAGCATCACTGAGAACGTGAATCATCATCATCATCATCATCAAG
 
. : . : . : . : . : . :
JMFN038D24+ AACCGGAAAGAAAACAAAATCAGTCAAGAAATTCAAACTCATCTTCCCTGAGGTGGGCGA
JMFF014A04+ AACCGGAAAGAAAACAAAATCAGTCAAGAAATTCAAACTCATCTTCCCTGAGGTGGGCGA
rJMFF014B04- AACCGGAAAGAAAACAAAATCAGTCAAGAAATTCAAACTCATCTTCCCTGAGGTGGGCGA
rJMSF005A08- AACCGGAAAGAAAACAAAATCAGTCAAGAAATTCAAACTCATCTTCCCTGAGGTGGGCGA
rJMFF014A04- AACCGGAAAGAAAACAAAATCAGTCAAGAAATTCAAACTCATCTTCCCTGAGGTGGGCGA
                      ____________________________________________________________
consensus AACCGGAAAGAAAACAAAATCAGTCAAGAAATTCAAACTCATCTTCCCTGAGGTGGGCGA
 
. : . : . : . : . : . :
JMFN038D24+ CGAATTTGAGGGGGCCCTTCCTGCCCTCCATA-CCCTCCACCACGAACTCCACCTTGTAA
JMFF014A04+ CGAATTTGAGGGGGCCCTTCCTGCCCTCCATACCCCTCCACCACGAACTCCACCTTGTAA
rJMFF014B04- CGAATTTGAGGGGGCCCTTCCTGCCCTCCATA-CCCTCCACCACGAACTCCACCTTGTAA
rJMSF005A08- CGAATTTGAGGGGGCCCTTCCTGCCCTCCATA-CCCTCCACCACGAANTCCACCTTGTAA
rJMFF014A04- CGAATTTGAGGGGGCCCTTCCTGCCCTCCATA-CCCTCCACCACGAACTCCACCTTGTAA
                      ____________________________________________________________
consensus CGAATTTGAGGGGGCCCTTCCTGCCCTCCATA-CCCTCCACCACGAACTCCACCTTGTAA
 
. : . : . : . : . : . :
JMFN038D24+ GGCAGGTTGGCGGAAATCGGCTTCCCCTTGTGAAGCGCGGCGTACTGTTTGAGAACCCCG
JMFF014A04+ GGCAGGTTGGCGGAAATCGGCTTCCCCTTGTGAAGCGCGGCGTACTGTTTGAGAACCCCG
rJMFF014B04- GGCAGGTTGGCGGAAATCGGCTTCCCCTTGTGAAGCGCGGCGTACTGTTTGAGAACCCCG
rJMSF005A08- GGCAGGTTGGCGGAGATCGGCTTCCCCTTGTGAAGCGCGGCGTACTGTTTGAGAANCCCG
rJMFF014A04- GGCAGGTTGGCGGAAATCGGCTTCCCCTTGTGAAGCGCGGCGTACTGTTTGAGAACCCCG
                      ____________________________________________________________
consensus GGCAGGTTGGCGGAAATCGGCTTCCCCTTGTGAAGCGCGGCGTACTGTTTGAGAACCCCG
 
. : . : . : . : . : . :
JMFN038D24+ GTTCGGCCAGTCAAGTCGAACTCGGGCACTTTGGGCACGTGATAAACCTTCAAAGGAGCC
JMFF014A04+ GTTCGGCCAGTCAAGTCGAACTCGGGCACTTTGGGCACGTGATAAACCTTCAAAGGAGCC
rJMFF014B04- GTTCGGCCAGTCAAGTCGAACTCGGGCACTTTGGGCACGTGATAAACCTTCAAAGGAGCC
rJMSF005A08- GTTCGGCCAGTCNAGTCGAACTCGGGCACTTTGGGCACGTGATAAACCTTCA
rJMFF014A04- GTTCGGCCAGTCAAGTCGAACTCGGGCACTTTGGGCACGTGATAAACCTTCAAAGGAGCC
                      ____________________________________________________________
consensus GTTCGGCCAGTCAAGTCGAACTCGGGCACTTTGGGCACGTGATAAACCTTCAAAGGAGCC
 
. : . : . : . : . : . :
JMFN038D24+ GTAACCCTAACCTTGGACCCAATTTTGGCAATCGCCTTAGCAGCGGTTTCATCGCAATCC
JMFF014A04+ GTAACCCTAACCTTGGACCCAATTTTGGCAATCGCCTTAGCAGCGGTTTCATCGCAATCC
rJMFF014B04- GTAACCCTAACCTTGGACCCAATTTTGGCAATCGCCTTAGCAGCGGTTTCATCGCAATCC
rJMFF014A04- GTAACCCTAACCTTGGACCCAATTTTGGCAATCGCCTTAGCAGCGGTTTCATCGCAATCC
JMSF005A06+ CGCCTTAGCAGCGGTTTCATCGCAATCC
                      ____________________________________________________________
consensus GTAACCCTAACCTTGGACCCAATTTTGGCAATCGCCTTAGCAGCGGTTTCATCGCAATCC
 
. : . : . : . : . : . :
JMFN038D24+ TCGTCGAAACGCAGCGAATTGGCGCTGGGGCCGGGGGAGTTGTCGACGACAGTGGCGGAA
JMFF014A04+ TCGTCGAAACGCAGCGAATTGGCGCTGGGGCCGGGGGAGTTGTCGACGACAGTGGCGGAA
rJMFF014B04- TCGTCGAAACGCAGCGAATTGGCGCTGGGGCCGGGGGAGTTGTCGACGACAGTGGCGGAA
rJMFF014A04- TCGTCGAAACGCAGCGAATTGGCGCTGGGGCCGGGGGAGTTGTCGACGACAGTGGCGGAA
JMSF005A06+ TCGTCGAAACGCAGCGAATTGGCGCTGGGGCCGGGGGAGTTGTCGACGACAGTGGCGGAA
                      ____________________________________________________________
consensus TCGTCGAAACGCAGCGAATTGGCGCTGGGGCCGGGGGAGTTGTCGACGACAGTGGCGGAA
 
. : . : . : . : . : . :
JMFN038D24+ TCGGAAGAGCATTTGACGGAGAGAAATTGAGGGGTTCGGGTTCGGAATCTGACGTGATGG
JMFF014A04+ TCGGAAGAGCATTTGACGGAGAGAAATTGAGGGGTTCGGGTTCGGAATCTGACGTGATGG
rJMFF014B04- TCGGAAGAGCATTTGACGGAGAGAAATTGAGGGGTTCGGGTNCNGAATCTGACGTGATGG
rJMFF014A04- TCGGAAGAGCATTTGACGGAGAGAAATTGAGGGGTTCGGGTTCGGAATCTGACGTGATGG
JMSF005A06+ TCGGAAGAGCATTTGACGGAGAGAAATTGAGGGGTTCGGGTTCGGAATCTGACGTGATGG
                      ____________________________________________________________
consensus TCGGAAGAGCATTTGACGGAGAGAAATTGAGGGGTTCGGGTTCGGAATCTGACGTGATGG
 
. : . : . : . : . : . :
JMFN038D24+ GATGATGGGTCGGCGGCGTTGGAGATGAGAAGAGAAGGGGTTCTTGAAGAGAAGAGGGCG
JMFF014A04+ GATGATGGGTCGGCGGCGTTGGAGATGAGAAGAGAAGGGGTTCTTGAAGAGAAGAGGGCG
rJMFF014B04- GATGATGGGTCG
rJMFF014A04- GATGATGGGTCGGCGGCGTTGGAGATGAGAAGAGAAGGGGTTCTTGAAGAGAAGAGGGCG
JMSF005A06+ GATGATGGGTCGGCGGCGTTGGAGATGAGAAGAGAAGGGGTTCTTGAAGAGAAGAGGGCG
                      ____________________________________________________________
consensus GATGATGGGTCGGCGGCGTTGGAGATGAGAAGAGAAGGGGTTCTTGAAGAGAAGAGGGCG
 
. : . : . : . : . : . :
JMFN038D24+ GCGACGGCTGCTGGACTTGAAGATGTAGTC
JMFF014A04+ GCGACGGCTGCTGGACTTGAAGATGTAGTCATGGCGGTTTCT
rJMFF014A04- GCGACGGCTGCTGGACTTGAAGATGTAGTCATGGCGGTTTCT
JMSF005A06+ GCGACGGCTGCTGGACTTGAAGATGTAGTCATGGCGGTTTCTGAGGAGAAGAAAGATACC
                      ____________________________________________________________
consensus GCGACGGCTGCTGGACTTGAAGATGTAGTCATGGCGGTTTCTGAGGAGAAGAAAGATACC