clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF014A04 | Sequence | 589 | 004945 (6) | ref|XP_009630916.1| | 3e-32 | PREDICTED: ferredoxin-thioredoxin reductase, variable chain-like [Nicotiana tom | 649 | 004945 (6) | ref|XP_009630916.1| | 1e-41 | PREDICTED: ferredoxin-thioredoxin reductase, variable chain-like [Nicotiana tom |
JMFF014B04 | Sequence | 549 | 004945 (6) | ref|XP_009630916.1| | 3e-39 | PREDICTED: ferredoxin-thioredoxin reductase, variable chain-like [Nicotiana tom | |||||
JMFN038D24 | Sequence | 608 | 004945 (6) | ref|XP_009630916.1| | 1e-41 | PREDICTED: ferredoxin-thioredoxin reductase, variable chain-like [Nicotiana tom | |||||
JMSF005A06 | Sequence | 268 | 004945 (6) | ||||||||
JMSF005A08 | Sequence | 244 | 002063 (3) | 334 | 004945 (6) | ref|XP_004229646.1| | 5e-22 | PREDICTED: ferredoxin-thioredoxin reductase, variable chain-like [Solanum lycop |
This contig is upended
. : . : . : . : . : . :
rJMFF014A04- AAGCATTTC
____________________________________________________________
consensus AAGCATTTC
. : . : . : . : . : . :
JMFN038D24+ TTACAAAAATTATTTCCATTAC
JMFF014A04+ TCCATTAC
rJMFF014B04- CTTCGTATCTACAAATCACAAACAGTCACAGTACATGTTACAAAAATTATTTCCATTAC
rJMSF005A08- TTACAAANATTATTTCCATTAC
rJMFF014A04- ACTTCGTATCTACAAATCACAAACAGTCACAGTACATGTTACAAAAATTATTTCCATTAC
____________________________________________________________
consensus ACTTCGTATCTACAAATCACAAACAGTCACAGTACATGTTACAAAAATTATTTCCATTAC
. : . : . : . : . : . :
JMFN038D24+ AAA-GTATTTCAGGGAAAGCATCACTGAGAACGTGAATCATCATCATCATCATCATCAAG
JMFF014A04+ AAA-GTATTTCAGGGAAAGCATCACTGAGAACGTGAATCATCATCATCATCATCATCAAG
rJMFF014B04- AAA-GTATTTCAGGGAAAGCATCACTGAGAACGTGAATCATCATCATCATCATCATCAAG
rJMSF005A08- AAAGGTATTTCAGGGAAAGCATCACTGAGAACGTGAATCANCATCATCATCATCATCAAG
rJMFF014A04- AAA-GTATTTCAGGGAAAGCATCACTGAGAACGTGAATCATCATCATCATCATCATCAAG
____________________________________________________________
consensus AAA-GTATTTCAGGGAAAGCATCACTGAGAACGTGAATCATCATCATCATCATCATCAAG
. : . : . : . : . : . :
JMFN038D24+ AACCGGAAAGAAAACAAAATCAGTCAAGAAATTCAAACTCATCTTCCCTGAGGTGGGCGA
JMFF014A04+ AACCGGAAAGAAAACAAAATCAGTCAAGAAATTCAAACTCATCTTCCCTGAGGTGGGCGA
rJMFF014B04- AACCGGAAAGAAAACAAAATCAGTCAAGAAATTCAAACTCATCTTCCCTGAGGTGGGCGA
rJMSF005A08- AACCGGAAAGAAAACAAAATCAGTCAAGAAATTCAAACTCATCTTCCCTGAGGTGGGCGA
rJMFF014A04- AACCGGAAAGAAAACAAAATCAGTCAAGAAATTCAAACTCATCTTCCCTGAGGTGGGCGA
____________________________________________________________
consensus AACCGGAAAGAAAACAAAATCAGTCAAGAAATTCAAACTCATCTTCCCTGAGGTGGGCGA
. : . : . : . : . : . :
JMFN038D24+ CGAATTTGAGGGGGCCCTTCCTGCCCTCCATA-CCCTCCACCACGAACTCCACCTTGTAA
JMFF014A04+ CGAATTTGAGGGGGCCCTTCCTGCCCTCCATACCCCTCCACCACGAACTCCACCTTGTAA
rJMFF014B04- CGAATTTGAGGGGGCCCTTCCTGCCCTCCATA-CCCTCCACCACGAACTCCACCTTGTAA
rJMSF005A08- CGAATTTGAGGGGGCCCTTCCTGCCCTCCATA-CCCTCCACCACGAANTCCACCTTGTAA
rJMFF014A04- CGAATTTGAGGGGGCCCTTCCTGCCCTCCATA-CCCTCCACCACGAACTCCACCTTGTAA
____________________________________________________________
consensus CGAATTTGAGGGGGCCCTTCCTGCCCTCCATA-CCCTCCACCACGAACTCCACCTTGTAA
. : . : . : . : . : . :
JMFN038D24+ GGCAGGTTGGCGGAAATCGGCTTCCCCTTGTGAAGCGCGGCGTACTGTTTGAGAACCCCG
JMFF014A04+ GGCAGGTTGGCGGAAATCGGCTTCCCCTTGTGAAGCGCGGCGTACTGTTTGAGAACCCCG
rJMFF014B04- GGCAGGTTGGCGGAAATCGGCTTCCCCTTGTGAAGCGCGGCGTACTGTTTGAGAACCCCG
rJMSF005A08- GGCAGGTTGGCGGAGATCGGCTTCCCCTTGTGAAGCGCGGCGTACTGTTTGAGAANCCCG
rJMFF014A04- GGCAGGTTGGCGGAAATCGGCTTCCCCTTGTGAAGCGCGGCGTACTGTTTGAGAACCCCG
____________________________________________________________
consensus GGCAGGTTGGCGGAAATCGGCTTCCCCTTGTGAAGCGCGGCGTACTGTTTGAGAACCCCG
. : . : . : . : . : . :
JMFN038D24+ GTTCGGCCAGTCAAGTCGAACTCGGGCACTTTGGGCACGTGATAAACCTTCAAAGGAGCC
JMFF014A04+ GTTCGGCCAGTCAAGTCGAACTCGGGCACTTTGGGCACGTGATAAACCTTCAAAGGAGCC
rJMFF014B04- GTTCGGCCAGTCAAGTCGAACTCGGGCACTTTGGGCACGTGATAAACCTTCAAAGGAGCC
rJMSF005A08- GTTCGGCCAGTCNAGTCGAACTCGGGCACTTTGGGCACGTGATAAACCTTCA
rJMFF014A04- GTTCGGCCAGTCAAGTCGAACTCGGGCACTTTGGGCACGTGATAAACCTTCAAAGGAGCC
____________________________________________________________
consensus GTTCGGCCAGTCAAGTCGAACTCGGGCACTTTGGGCACGTGATAAACCTTCAAAGGAGCC
. : . : . : . : . : . :
JMFN038D24+ GTAACCCTAACCTTGGACCCAATTTTGGCAATCGCCTTAGCAGCGGTTTCATCGCAATCC
JMFF014A04+ GTAACCCTAACCTTGGACCCAATTTTGGCAATCGCCTTAGCAGCGGTTTCATCGCAATCC
rJMFF014B04- GTAACCCTAACCTTGGACCCAATTTTGGCAATCGCCTTAGCAGCGGTTTCATCGCAATCC
rJMFF014A04- GTAACCCTAACCTTGGACCCAATTTTGGCAATCGCCTTAGCAGCGGTTTCATCGCAATCC
JMSF005A06+ CGCCTTAGCAGCGGTTTCATCGCAATCC
____________________________________________________________
consensus GTAACCCTAACCTTGGACCCAATTTTGGCAATCGCCTTAGCAGCGGTTTCATCGCAATCC
. : . : . : . : . : . :
JMFN038D24+ TCGTCGAAACGCAGCGAATTGGCGCTGGGGCCGGGGGAGTTGTCGACGACAGTGGCGGAA
JMFF014A04+ TCGTCGAAACGCAGCGAATTGGCGCTGGGGCCGGGGGAGTTGTCGACGACAGTGGCGGAA
rJMFF014B04- TCGTCGAAACGCAGCGAATTGGCGCTGGGGCCGGGGGAGTTGTCGACGACAGTGGCGGAA
rJMFF014A04- TCGTCGAAACGCAGCGAATTGGCGCTGGGGCCGGGGGAGTTGTCGACGACAGTGGCGGAA
JMSF005A06+ TCGTCGAAACGCAGCGAATTGGCGCTGGGGCCGGGGGAGTTGTCGACGACAGTGGCGGAA
____________________________________________________________
consensus TCGTCGAAACGCAGCGAATTGGCGCTGGGGCCGGGGGAGTTGTCGACGACAGTGGCGGAA
. : . : . : . : . : . :
JMFN038D24+ TCGGAAGAGCATTTGACGGAGAGAAATTGAGGGGTTCGGGTTCGGAATCTGACGTGATGG
JMFF014A04+ TCGGAAGAGCATTTGACGGAGAGAAATTGAGGGGTTCGGGTTCGGAATCTGACGTGATGG
rJMFF014B04- TCGGAAGAGCATTTGACGGAGAGAAATTGAGGGGTTCGGGTNCNGAATCTGACGTGATGG
rJMFF014A04- TCGGAAGAGCATTTGACGGAGAGAAATTGAGGGGTTCGGGTTCGGAATCTGACGTGATGG
JMSF005A06+ TCGGAAGAGCATTTGACGGAGAGAAATTGAGGGGTTCGGGTTCGGAATCTGACGTGATGG
____________________________________________________________
consensus TCGGAAGAGCATTTGACGGAGAGAAATTGAGGGGTTCGGGTTCGGAATCTGACGTGATGG
. : . : . : . : . : . :
JMFN038D24+ GATGATGGGTCGGCGGCGTTGGAGATGAGAAGAGAAGGGGTTCTTGAAGAGAAGAGGGCG
JMFF014A04+ GATGATGGGTCGGCGGCGTTGGAGATGAGAAGAGAAGGGGTTCTTGAAGAGAAGAGGGCG
rJMFF014B04- GATGATGGGTCG
rJMFF014A04- GATGATGGGTCGGCGGCGTTGGAGATGAGAAGAGAAGGGGTTCTTGAAGAGAAGAGGGCG
JMSF005A06+ GATGATGGGTCGGCGGCGTTGGAGATGAGAAGAGAAGGGGTTCTTGAAGAGAAGAGGGCG
____________________________________________________________
consensus GATGATGGGTCGGCGGCGTTGGAGATGAGAAGAGAAGGGGTTCTTGAAGAGAAGAGGGCG
. : . : . : . : . : . :
JMFN038D24+ GCGACGGCTGCTGGACTTGAAGATGTAGTC
JMFF014A04+ GCGACGGCTGCTGGACTTGAAGATGTAGTCATGGCGGTTTCT
rJMFF014A04- GCGACGGCTGCTGGACTTGAAGATGTAGTCATGGCGGTTTCT
JMSF005A06+ GCGACGGCTGCTGGACTTGAAGATGTAGTCATGGCGGTTTCTGAGGAGAAGAAAGATACC
____________________________________________________________
consensus GCGACGGCTGCTGGACTTGAAGATGTAGTCATGGCGGTTTCTGAGGAGAAGAAAGATACC