Contig 004944:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004O24Sequence283004944 (3)ref|XP_009592259.1|3e-11PREDICTED: transcription factor IIIA-like isoform X2 [Nicotiana tomentosiformis417001274 (3)ref|XP_009804391.1|3e-23PREDICTED: transcription factor IIIA-like isoform X1 [Nicotiana sylvestris]
JMSF020L17Sequence383004944 (3)ref|XP_009592259.1|9e-26PREDICTED: transcription factor IIIA-like isoform X2 [Nicotiana tomentosiformis823001274 (3)ref|XP_009622482.1|2e-112PREDICTED: Krueppel-related zinc finger protein 1-like isoform X2 [Nicotiana to
JMSF024C04Sequence585004944 (3)ref|XP_009592258.1|1e-23PREDICTED: Krueppel-related zinc finger protein 1-like isoform X1 [Nicotiana to776001274 (3)ref|XP_009622481.1|2e-99PREDICTED: Krueppel-related zinc finger protein 1-like isoform X1 [Nicotiana to

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024C04+                       CANTCCAGAAAAGCATATAATATAAGTGTGTGTGTNTATAATGTAAGA
                      ____________________________________________________________
consensus                         CANTCCAGAAAAGCATATAATATAAGTGTGTGTGTNTATAATGTAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024C04+           GATCATAGTACCACTTCATCACGTCCATAGGAGTANTACGCCTAACNTAAGGNGTTAAGG
                      ____________________________________________________________
consensus             GATCATAGTACCACTTCATCACGTCCATAGGAGTANTACGCCTAACNTAAGGNGTTAAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024C04+           TTCAAAANGAGTTAATCAATTACACANCTAACCGANGAATACAAAAANTACTTCTCAAGT
                      ____________________________________________________________
consensus             TTCAAAANGAGTTAATCAATTACACANCTAACCGANGAATACAAAAANTACTTCTCAAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024C04+           TCTAATATNTATNTATAGATAAAGGNTCNGATTCTATACCTCAAGNGAANGACTTTGCAT
JMSF020L17+                                                  CTCAAGNGAANGACTTTGCAT
                      ____________________________________________________________
consensus             TCTAATATNTATNTATAGATAAAGGNTCNGATTCTATACCTCAAGNGAANGACTTTGCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024C04+           ATGCTGCTTTAAANGAGCAGGTTTCNGGAAGCTCGCTCCACACTCTTCACANGTGTGCAT
JMSF020L17+           ATGCTGCTTTAAANGAGCAGGTTTCNGGAAGCTCGCTCCACACTCTTCACANGTGTGCAT
                      ____________________________________________________________
consensus             ATGCTGCTTTAAANGAGCAGGTTTCNGGAAGCTCGCTCCACACTCTTCACANGTGTGCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024C04+           CTTTGGACCCTCCTCTTTCGANTCATCAGANTCACCNTTCGCTNTGAGCTCATCCNGANG
JMSF020L17+           NTTTGGACCCTCCTCTTTCGANTCATCAGANTCACCCTTCGCTTTGAGCTCATCCNGATG
JMSF004O24+                            TCGANTCATCAGANTCACCCTTCGCTTTGAGCTCATCCNGATG
                      ____________________________________________________________
consensus             CTTTGGACCCTCCTCTTTCGANTCATCAGANTCACCCTTCGCTTTGAGCTCATCCNGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024C04+           GTGAGCAAGGACANGGGAGGAGANGAGTGCTTTNTTAGAGCGGCAAATACCACAGAACTC
JMSF020L17+           GTGAGCAAGGACANGGGAGGAGANGAGTGCTTTNTTAGAGCGGCAAATACCACAGAACTC
JMSF004O24+           GTGAGCAAGGACANGGGAGGAGATGAGTGCTTTCTTAGAGCGGCAAATACCACAGAACTC
                      ____________________________________________________________
consensus             GTGAGCAAGGACANGGGAGGAGATGAGTGCTTTCTTAGAGCGGCAAATACCACAGAACTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024C04+           GCAGTAATATCTCNNTATGTCCNTGAAAANNACTGGTNTGTTNTGATCGCCCTCANCCAN
JMSF020L17+           GCAGTAATATCTCNNTATGTCCNTGAAAAANACTGGTNTGTTNTGATCGCCCTCANCCAN
JMSF004O24+           GCAGTAATATCTCNNTATGTCCNNGAAAAANACTGGTCTGTTNTGATCGCCCTCATCCAN
                      ____________________________________________________________
consensus             GCAGTAATATCTCNNTATGTCCNTGAAAAANACTGGTCTGTTNTGATCGCCCTCATCCAN
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024C04+           TTCTCGATCGGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAATTTGTTAGAC
JMSF020L17+           TTCTCGATCGGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAATTTGTTAGAC
JMSF004O24+           TTCTCGATCGGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAATTTGTTAGAC
                      ____________________________________________________________
consensus             TTCTCGATCGGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAATTTGTTAGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024C04+           GGGGATAAGAGGAATAGCGCCGCCGCAGCTACGATTGGCGAAGGAGAGTTTAGCA     
JMSF020L17+           GGGGATAAGAGGAATAGCGCCGCCGCAGCTACGATTGGCGAAGGAGAGTTTAGCA     
JMSF004O24+           GGGGATAAGAGGAATAGCGCCGCCGCAGCTACGATTGGCGAAGGAGAGTTTAGCACATTT
                      ____________________________________________________________
consensus             GGGGATAAGAGGAATAGCGCCGCCGCAGCTACGATTGGCGAAGGAGAGTTTAGCACATTT