Contig 004943:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN016N24Sequence622004943 (6)ref|XP_009593067.1|204PREDICTED: uncharacterized protein LOC104089792 [Nicotiana tomentosiformis] ref|
JMFN018A10Sequence588004943 (6)ref|XP_009593067.1|204PREDICTED: uncharacterized protein LOC104089792 [Nicotiana tomentosiformis] ref|
JMFN019J02Sequence601004943 (6)ref|XP_009593067.1|202PREDICTED: uncharacterized protein LOC104089792 [Nicotiana tomentosiformis] ref|
JMSF004M14Sequence383010560 (3)322004943 (6)
JMSF004O16Sequence199004943 (6)251004943 (6)

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN016N24+ CCATTGAGATACATTTTGTC
                      ____________________________________________________________
consensus CCATTGAGATACATTTTGTC
 
. : . : . : . : . : . :
rJMSF004M14- AAGAACCTACCTTGCTATTGGCCAAAAACTACAATTATGCTCAAAAGTTCA
rJMSF004O16- AAGAACCTACCTTGCTATTGGCCAAAAACTACAATTATGCTCAAAAGTTCA
JMFN016N24+ TTGAACTTGAAGAACCTACCTTGCTATTGGCCAAAAACTACAATTATGCTCAAAAGTTCA
                      ____________________________________________________________
consensus TTGAACTTGAAGAACCTACCTTGCTATTGGCCAAAAACTACAATTATGCTCAAAAGTTCA
 
. : . : . : . : . : . :
rJMSF004M14- AGAGGATAGAAACTCNAAAATCCATCAATGTGAAATGTCTATCGTCTTCTCTTATTACTG
rJMSF004O16- AGAGGATAGAAACTCTAANATCCATCAATGTGAAATGTCTATCGTCTTCTCTTATTACTG
JMFN016N24+ AGAGGATAGAAACTCTAAAATCCATCAATGTGAAATGTCTATCGTCTTCTCTTATTACTG
JMFN019J02+ ATCCATCAATGTGAAATGTCTATCGTCTTCTCTTATTACTG
JMFN018A10+ AATGTCTATCGTCTTCTCTTATTACTG
                      ____________________________________________________________
consensus AGAGGATAGAAACTCTAAAATCCATCAATGTGAAATGTCTATCGTCTTCTCTTATTACTG
 
. : . : . : . : . : . :
rJMSF004M14- GGACCATGAAATCCACACTTCAATGGCGCTATATTGCAGCGTATTGAAATGCCAATTTCC
rJMSF004O16- GGACCATGAAATCCACACTTCAATGGCGCTATATTGCAGCGTATTGAAATGCCAATTTCC
JMFN016N24+ GGACCATGAAATCCACACTTCAATGGCGCTATATTGCAGCGTATTGAAATGCCAATTTCC
JMFN019J02+ GGACCATGAAATCCACACTTCAATGGCGCTATATTGCAGCGTATTGAAATGCCAATTTCC
JMFN018A10+ GGACCATGAAATCCACACTTCAATGGCGCTATATTGCAGCGTATTGAAATGCCAATTTCC
                      ____________________________________________________________
consensus GGACCATGAAATCCACACTTCAATGGCGCTATATTGCAGCGTATTGAAATGCCAATTTCC
 
. : . : . : . : . : . :
rJMSF004M14- CTTACTCCATTGCACCTGCAAAGGGATGGCGGCATTCAGCCGTTACTGACTGGAACTGGT
rJMSF004O16- CTTACTCCATTGCACCTGCAAAGGGATGGCGGCATTCAGCCGTTACTGACTGGAACTG
JMFN016N24+ CTTACTCCATTGCACCTGCAAAGGGATGGCGGCATTCAGCCGTTACTGACTGGAACTGGT
JMFN019J02+ CTTACTCCATTGCACCTGCAAAGGGATGGCGGCATTCAGCCGTTACTGACTGGAACTGGT
JMFN018A10+ CTTACTCCATTGCACCTGCAAAGGGATGGCGGCATTCAGCCGTTACTGACTGGAACTGGT
                      ____________________________________________________________
consensus CTTACTCCATTGCACCTGCAAAGGGATGGCGGCATTCAGCCGTTACTGACTGGAACTGGT
 
. : . : . : . : . : . :
rJMSF004M14- TGCAGAAGCTGGATGGTGATTTATGACCAATGGGNGGCGCAGGGCACGGNGGTTAGCTGC
JMFN016N24+ TGCAGAAGCTGGATGGTGATTTATGACCAATGGGGGGCGCAGGGCACGGTGGTTAGCTGC
JMFN019J02+ TGCAGAAGCTGGATGGTGATTTATGACCAATGGGGAGCGCAGGGCACGGTGGTTAGCTGC
JMFN018A10+ TGCAGAAGCTGGATGGTGATTTATGACCAATGGGGGGCGCAGGGCACGGTGGTTAGCTGC
                      ____________________________________________________________
consensus TGCAGAAGCTGGATGGTGATTTATGACCAATGGGGGGCGCAGGGCACGGTGGTTAGCTGC
 
. : . : . : . : . : . :
rJMSF004M14- TTTCTCCTT
JMFN016N24+ TTTCTCCTTTCGTGCCTTGTACATCTCTTCTGTTTCAACAACTACCAACCGTTTCACCTG
JMFN019J02+ TTTCTCCTTTCGTGCCTTGTACATCTCTTCTGTTTCAACAACTACCAACCGTTTCACCTG
JMFN018A10+ TTTCTCCTTTCGTGCCTTGTACATCTCTTCTGTTTCAACAACTACCAACCGTTTCACCTG
                      ____________________________________________________________
consensus TTTCTCCTTTCGTGCCTTGTACATCTCTTCTGTTTCAACAACTACCAACCGTTTCACCTG
 
. : . : . : . : . : . :
JMFN016N24+ CTGGAGCATTCCCCTGACAGTAGGGGTGTTCCAACGCATCACTGTTCGGTTGCATTTCTG
JMFN019J02+ CTGGAGCATTCCCCTGACAGTAGGGGTGTTCCACCGCATCACTGTTCGGTTGCATTTCTG
JMFN018A10+ CTGGAGCATTCCCCTGACAGTAGGGGTGTTCCACCGCATCACTGTTCGGTTGCATTTCTG
                      ____________________________________________________________
consensus CTGGAGCATTCCCCTGACAGTAGGGGTGTTCCACCGCATCACTGTTCGGTTGCATTTCTG
 
. : . : . : . : . : . :
JMFN016N24+ AAGACGCAATGCTTCTAAGGTTCGCCTATGGAGCCTCCTAGTGCCCGGAATACCTCTTAC
JMFN019J02+ AAGACGCAATGCTTCTAAGGTTCGCCTATGGAGCCTCCTAGTGCCCGGAATACCTCTTAC
JMFN018A10+ AAGACGCAATGCTTCTAAGGTTCGCCTATGGAGCCTCCTAGTGCCCGGAATACCTCTTAC
                      ____________________________________________________________
consensus AAGACGCAATGCTTCTAAGGTTCGCCTATGGAGCCTCCTAGTGCCCGGAATACCTCTTAC
 
. : . : . : . : . : . :
JMFN016N24+ AAGCGTAATGTACAGATTTGGGCTCCATGCAATTGGAGCACAGGCTTTGAAAGCATTGAA
JMFN019J02+ AAGCGTAATGTACAGATTTGGGCTCCATGCAATTGGAGCACAGGCTTTGAAAGCATTGAA
JMFN018A10+ AAGCGTAATGTACAGATTTGGGCTCCATGCAATTGGAGCACAGGCTTTGAAAGCATTGAA
JMSF004O16+ AGGCTTTGAAAGCATTGAA
                      ____________________________________________________________
consensus AAGCGTAATGTACAGATTTGGGCTCCATGCAATTGGAGCACAGGCTTTGAAAGCATTGAA
 
. : . : . : . : . : . :
JMFN016N24+ AGCACTCATATCCTTCTTTACTGCTACCTGGAGTACAATTGATACCTTTTGTCAAAGCTT
JMFN019J02+ AGCACTCATATCCTTCTTTACTGCTACCTGGAGTACAATTGATACCTTTTGTCAAAGCTT
JMFN018A10+ AGCACTCATATCCTTCTTTACTGCTACCTGGAGTACAATTGATACCTTTTGTCAAAGCTT
JMSF004O16+ AGCACTCATATCCTTCTTTACTGCTACCTGGAGTACAATTGATACCTTTTGTCAAAGCTT
                      ____________________________________________________________
consensus AGCACTCATATCCTTCTTTACTGCTACCTGGAGTACAATTGATACCTTTTGTCAAAGCTT
 
. : . : . : . : . : . :
JMFN016N24+ TA
JMFN019J02+ TACTTCAAAACAGAAGCTAGCGTTCACTGACCGGAGTGTCGCCGAGGGCGGCGCAGAGGC
JMFN018A10+ TACTTCAAAACAGAAGCTAGCGTTCACTGACCGGAGTGTCGCCGAGGGCGGCGCAGAGGC
JMSF004O16+ TACTTCAAAACAGAAGCTAGCGTTCACTGACCGGAGTGTCGCCGAGGGCGGCGCAGAGGC
                      ____________________________________________________________
consensus TACTTCAAAACAGAAGCTAGCGTTCACTGACCGGAGTGTCGCCGAGGGCGGCGCAGAGGC
 
. : . : . : . : . : . :
JMFN019J02+ GGTGAGAGACGATGGAGAA
JMFN018A10+ GGTGAGAGACGATGGAGAA
JMSF004O16+ GGTGAGAGACGATGGAGAAGTGGAGAACGGAATAAGGGATTAGGGATTAGGTCTATATCC
                      ____________________________________________________________
consensus GGTGAGAGACGATGGAGAAGTGGAGAACGGAATAAGGGATTAGGGATTAGGTCTATATCC