Contig 004941:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF045D17Sequence647004941 (5)ref|XP_009610243.1|1e-89PREDICTED: protein farnesyltransferase subunit beta isoform X3 [Nicotiana tomen605001203 (5)gb|AAB38796.1|8e-44farnesyltransferase beta subunit, partial [Nicotiana glutinosa]
JMFF045N15Sequence647004941 (5)ref|XP_009610243.1|3e-85PREDICTED: protein farnesyltransferase subunit beta isoform X3 [Nicotiana tomen578001203 (5)gb|AAB38796.1|1e-43farnesyltransferase beta subunit, partial [Nicotiana glutinosa]
JMSF001H10Sequence481004941 (5)ref|XP_009610243.1|1e-57PREDICTED: protein farnesyltransferase subunit beta isoform X3 [Nicotiana tomen683001203 (5)ref|XP_010315876.1|1e-49PREDICTED: farnesyl protein transferase subunit B isoform X2 [Solanum lycopersi
JMSF004L07Sequence385004941 (5)emb|CDI30234.1|2e-35protein farnesyltransferase beta-subunit [Nicotiana tabacum]381001203 (5)gb|AAB38796.1|2e-38farnesyltransferase beta subunit, partial [Nicotiana glutinosa]
JMSF033A16Sequence606004941 (5)ref|XP_009610243.1|7e-54PREDICTED: protein farnesyltransferase subunit beta isoform X3 [Nicotiana tomen701001203 (5)gb|AAB69757.1|9e-66farnesyl-protein transferase beta subunit [Solanum lycopersicum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF045D17+ TCAAGAATGTTCAGGATGCTTGCAACTGAAATGGCAGTATAGCACG
JMFF045N15+ TCAAGAATGTTCAGGATGCTTGCAACTGAAATGGCAGTATAGCACG
                      ____________________________________________________________
consensus TCAAGAATGTTCAGGATGCTTGCAACTGAAATGGCAGTATAGCACG
 
. : . : . : . : . : . :
JMFF045D17+ CACGAACATCCACTTCCCCACCATCGTGCATCCTGAAGCCGCCATTTGCTTCTTTCATTC
JMFF045N15+ CACGAACATCCACTTCCCCACCATCGTGCATCCTGAAGCCGCCATTTGCTTCTTTCATTC
JMSF033A16+ TTCATTC
                      ____________________________________________________________
consensus CACGAACATCCACTTCCCCACCATCGTGCATCCTGAAGCCGCCATTTGCTTCTTTCATTC
 
. : . : . : . : . : . :
JMFF045D17+ GCAGCAAAAAGGAGTATAATTTATCTCTCTTAATTGATGAGAAAGATTTTTGACCTCCCA
JMFF045N15+ GCAGCAAAAAGGAGTATAATTTATCTCTCTTAATTGATGAGAAAGATTTTTGACCTCCCA
JMSF033A16+ GCAGCAAAAAGGAGTATAATTTATCTCTCTTAATTGATGAGAAAGATTTTTGACCTCCCA
                      ____________________________________________________________
consensus GCAGCAAAAAGGAGTATAATTTATCTCTCTTAATTGATGAGAAAGATTTTTGACCTCCCA
 
. : . : . : . : . : . :
JMFF045D17+ AAGTTATGAGTGCATTAACTGCAGCATAGGTTGTTGCAAGATGTGGCATCTGACCAGGTC
JMFF045N15+ AAGTTATGAGTGCATTAACTGCAGCATAGGTTGTTGCAAGATGTGGCATCTGACCAGGTC
JMSF001H10+ TAACTGCAGCATAGGTTGTTGCAAGATGTGGCATCTGACCAGGTC
JMSF033A16+ AAGTTATGAGTGCA-TAACTGCAGCATAGGTTGTTGCAAGATGTGGCATCTGACCAGGTC
                      ____________________________________________________________
consensus AAGTTATGAGTGCATTAACTGCAGCATAGGTTGTTGCAAGATGTGGCATCTGACCAGGTC
 
. : . : . : . : . : . :
JMFF045D17+ CACCGCCATATCCACCATTTGGATCCTGGCAGCGACTGAGAAAATCAANGGCGTCGTCTT
JMFF045N15+ CACCGCCATATCCACCATTTGGATCCTGGCAGCGACTGAGAAAATCAATGGCGTCGTCTT
JMSF001H10+ CACCGCCATATCCACCATTTGGATCCTGGCAGCGACTGAGAAAATCAAGGGCGTCGTCTT
JMSF033A16+ CACCGCCATATCCACCATTTGGATCCTGGCAGCGACTGAGAAAATCAANGGCGTCGTCTT
                      ____________________________________________________________
consensus CACCGCCATATCCACCATTTGGATCCTGGCAGCGACTGAGAAAATCAATGGCGTCGTCTT
 
. : . : . : . : . : . :
JMFF045D17+ TCAATTTATCGTCAATAGACTCGCCCAATAAAGCAATCGAATGGATTATCCAATAGCAAA
JMFF045N15+ TCAATTTATCGTCAATAGACTCGCCCAATAAAGCAATCGAATGGATTATCCAATAGCAAA
JMSF001H10+ TCAATTTATCGTCAATAGACTCGCCCAATAAAGCAATCGAATGGATTATCCAATAGCAAA
JMSF033A16+ TCAATTTATCGTCAATAGACTCGCCCAATAAAGCAATCGAATGGATTATCCAATAGCAAA
JMSF004L07+ ATCGAATGGATTATCCAATAGCAAA
                      ____________________________________________________________
consensus TCAATTTATCGTCAATAGACTCGCCCAATAAAGCAATCGAATGGATTATCCAATAGCAAA
 
. : . : . : . : . : . :
JMFF045D17+ GCCAAGGTCGATTGGCATCGAGAACAGAAAACGATGGACCGAGGTGATGGAGTCCTCTGT
JMFF045N15+ GCCAAGGTCGATTGGCATCGAGAACAGAAAACGATGGACCGAGGTGATGGAGTCCTCTGT
JMSF001H10+ GCCAAGGTCGATTGGCATCGAGAACAGAAAACGATGGACCGAGGTGATGGAGTCCTCTGT
JMSF033A16+ GCCAAGGTCGATTGGCATCGAGAACAGAAAACGATGGACCGAGGTGATGGAGTCCTCTGT
JMSF004L07+ GCCAAGGTCGATNGGCATCGAGAACAGAAAACGATGGACCGAGGTGATGGAGTCCTCTGT
                      ____________________________________________________________
consensus GCCAAGGTCGATTGGCATCGAGAACAGAAAACGATGGACCGAGGTGATGGAGTCCTCTGT
 
. : . : . : . : . : . :
JMFF045D17+ ATAGATACTCAACGTGCTTCTCACGTTGAAGCTCCAAGATGACGGACTGAGAGTTGGGAG
JMFF045N15+ ATAGATACTCAACGTGCTTCTCACGTTGAAGCTCCAAGATGACGGACTGAGAGTTGGGAG
JMSF001H10+ ATAGATACTCAACGTGCTTCTCACGTTGAAGCTCCAAGATGACGGACTGAGAGTTGGGAG
JMSF033A16+ ATAGATACTCAACGTGCTTCTCACGTTGAAGCTCCAAGATGACGGACTGAGAGTTGGGAG
JMSF004L07+ ATAGATACTCAACGTGCTTCTCACGTTGAAGCTCCAAGATGACGGACTGAGAGTTGGGAG
                      ____________________________________________________________
consensus ATAGATACTCAACGTGCTTCTCACGTTGAAGCTCCAAGATGACGGACTGAGAGTTGGGAG
 
. : . : . : . : . : . :
JMFF045D17+ GGATGCTGTAGAAGAAGTTGTAAATTTCGCGGACTTGACGCTCTACCGTCCATTGTTCTT
JMFF045N15+ GGATGCTGTAGAAGAAGTTGTAAATTTCGCGGACTTGACGCTCTACCGTCCGTTGTTCTT
JMSF001H10+ GGATGCTGTAGAAGAAGTTGTAAATTTCGCGGACTTGACGCTCTACCGTCCATTGTTCTT
JMSF033A16+ GGATGCTGTAGAAGAAGTTGTAAATTTCGCGGACTTGACGCTCTACCGTCCATTGTTCTT
JMSF004L07+ GGATGCTGTAGAAGAAGTTGTAAATTTCGCGGACTTGACGCTCTACCGTCCATTGTTCTT
                      ____________________________________________________________
consensus GGATGCTGTAGAAGAAGTTGTAAATTTCGCGGACTTGACGCTCTACCGTCCATTGTTCTT
 
. : . : . : . : . : . :
JMFF045D17+ CCTGAGTCTTCGTCCCTGTCGTAGACTCCATCGTCGCTATTCCGACCACCGGAAAAAAGC
JMFF045N15+ CCTGAGTCTTCGTCCCTGTCGTAGACTCCATCGTCGCTATTCCGACCACCGGAAAAAAGC
JMSF001H10+ CCTGAGTCTTCGTCCCTGTCGTAGACTCCATCGTCGCTATTCCGACCACCGGAAAAAAGC
JMSF033A16+ CCTGAGTCTTCGTCCCTGTCGTAGACTCCATCGTCGCTATTCCGACCACCGGAAAAAAGC
JMSF004L07+ CCTGAGTCTTCGTCCCTGTCGTAGACTCCATCGTCGCTATTCCGACCACCGGAAAAAAGC
                      ____________________________________________________________
consensus CCTGAGTCTTCGTCCCTGTCGTAGACTCCATCGTCGCTATTCCGACCACCGGAAAAAAGC
 
. : . : . : . : . : . :
JMFF045D17+ ACTCAATCTGACCGGCGGGCGAAGACCCTGACGTTGACCTTCTATGCTTCCAGCCTTCAA
JMFF045N15+ ACTCAATCTGACCGGCGGGCGAAGACCCTGACGTTGACCTTCTATGCTTCCAGCCTTCAA
JMSF001H10+ ACTCAATCTGACCGGCGGGCGAAGACCCTGACGTTGACCTTCTATGCTTCCAGCCTTCAA
JMSF033A16+ ACTCAATCTGACCGGCGGGCGAAGACCCTGACGTTGACCTTCTATGCTTCCAGCCTTCAA
JMSF004L07+ ACTCAATCTGACCGGCGGGCGAAGACCCTGACGTTGACCTTCTATGCTTCCAGCCTTCAA
                      ____________________________________________________________
consensus ACTCAATCTGACCGGCGGGCGAAGACCCTGACGTTGACCTTCTATGCTTCCAGCCTTCAA
 
. : . : . : . : . : . :
JMFF045D17+ C
JMFF045N15+ C
JMSF001H10+ C
JMSF033A16+ CAGTTCAACTTCGACTTCGATTCGCTTACTTGTACGGCCCGCAGGGCATATGCGTTGTCC
JMSF004L07+ CAGTTCAACTTCGACTTCGATTCGCTTACTTGTACGGCCCGCAGGGCATATGCGTTGTCC
                      ____________________________________________________________
consensus CAGTTCAACTTCGACTTCGATTCGCTTACTTGTACGGCCCGCAGGGCATATGCGTTGTCC