Contig 004940:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS107C04Sequence623004940 (4)dbj|BAF46306.1|6e-40ataxin-2 related protein [Ipomoea nil]
JMSF004J23Sequence349004940 (4)422005835 (4)
JMSF050C05Sequence608004940 (4)dbj|BAF46306.1|2e-43ataxin-2 related protein [Ipomoea nil]738005835 (4)ref|XP_009609058.1|2e-35PREDICTED: polyadenylate-binding protein-interacting protein 4-like isoform X2
JMSF050F18Sequence729004940 (4)dbj|BAF46306.1|1e-58ataxin-2 related protein [Ipomoea nil]779005835 (4)ref|XP_009609056.1|7e-35PREDICTED: polyadenylate-binding protein-interacting protein 4-like isoform X1

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF050F18+ TTGCGATATGCATGAATCAGT
                      ____________________________________________________________
consensus TTGCGATATGCATGAATCAGT
 
. : . : . : . : . : . :
JMFS107C04+ CGCTGGTACTCATNTGTTACATCATCTGGGGTTAAATG
JMSF050F18+ CATTAACTCATGCTGCTTTTCCCGCTGGTACTCATTTGTTACATCATCTGGGGTTAAATG
                      ____________________________________________________________
consensus CATTAACTCATGCTGCTTTTCCCGCTGGTACTCATTTGTTACATCATCTGGGGTTAAATG
 
. : . : . : . : . : . :
JMFS107C04+ CACACCCTTAGATGTAACTTGCACAAGCTCTTTAGCTGGAATTATGAATGTCCTTGATGC
JMSF050F18+ CACACCCTTAGATGTAACTTGCACAAGCTCTTTAGCTGGAATTATGAATGTCCTTGATGC
JMSF050C05+ ATTATGAATGTCCTTGATGC
                      ____________________________________________________________
consensus CACACCCTTAGATGTAACTTGCACAAGCTCTTTAGCTGGAATTATGAATGTCCTTGATGC
 
. : . : . : . : . : . :
JMFS107C04+ AGGCTTGCTAAGGGATTCAGAAGTATAGTTCTGTCCACGAGAACCATCTTTTACCAAGCG
JMSF050F18+ AGGCTTGCTAAGGGATTCAGAAGTATAGTTCTGTCCACGAGAACCATCTTTTACCAAGCG
JMSF050C05+ AGGCTTGCTAAGGGATTCAGAAGTATAGTTCTGTCCACGAGAACCATCTTTTACCAAGCG
                      ____________________________________________________________
consensus AGGCTTGCTAAGGGATTCAGAAGTATAGTTCTGTCCACGAGAACCATCTTTTACCAAGCG
 
. : . : . : . : . : . :
JMFS107C04+ AGCCATTTTCAGAACAATATCAAAATCCTTATCCGCATTAGTTGCATGAAGTATCCCTGA
JMSF050F18+ AGCCATTTTCAGAACAATATCAAAATCCTTATCCGCATTAGTTGCATGAAGTATCCCTG-
JMSF050C05+ AGCCATTTTCAGAACAATATCAAAATCCTTATCCGCATTAGTTGCATGAAGTATCCCTG-
                      ____________________________________________________________
consensus AGCCATTTTCAGAACAATATCAAAATCCTTATCCGCATTAGTTGCATGAAGTATCCCTG-
 
. : . : . : . : . : . :
JMFS107C04+ AAAAAACTGAACCATCCAACACCTGTACTTCCACTTGATGTCCAATAAGGCATGCAGTTA
JMSF050F18+ AAAAAACTGAACCATCCAACACCTGTACTTCCACTTGATGTCCAATAAGGCATGCAGTTA
JMSF050C05+ AAAAAACTGAACCATCCAACACCTGTACTTCCACTTGATGTCCAATAAGGCATGCAGTTA
                      ____________________________________________________________
consensus AAAAAACTGAACCATCCAACACCTGTACTTCCACTTGATGTCCAATAAGGCATGCAGTTA
 
. : . : . : . : . : . :
JMFS107C04+ CATAAAATAGTCGATCACGTGGAGAGCTTTCAAACCCTCCCCCTTTACCTGCACTTGTCA
JMSF050F18+ CATAAAATAGTCGATCACGTGGAGAGCTTTCAAACCCTCCCCCTTTACCTGCACTTGTCA
JMSF050C05+ CATAAAATAGTCGATCACGTGGAGAGCTTTCAAACCCTCCCCCTTTACCTGCACTTGTCA
                      ____________________________________________________________
consensus CATAAAATAGTCGATCACGTGGAGAGCTTTCAAACCCTCCCCCTTTACCTGCACTTGTCA
 
. : . : . : . : . : . :
JMFS107C04+ ACCGGATGGAATTTGCTTTTGCATTCTGCAGCTTACGACGGCCAAATCCATTGACAGAAG
JMSF050F18+ ACCGGATGGAATTTGCTTTTGCATTCTGCAGCTTACGACGGCCAAATCCATTGACAGAAG
JMSF050C05+ ACCGGATGGAATTNGCTTTTGCATTCTGCAGCTTACGACGGCCAAATCCATTGACAGAAG
JMSF004J23+ TTTGCATTNTGCAGCTTACGACGGCCAAATCCATTGACAGAAG
                      ____________________________________________________________
consensus ACCGGATGGAATTTGCTTTTGCATTCTGCAGCTTACGACGGCCAAATCCATTGACAGAAG
 
. : . : . : . : . : . :
JMFS107C04+ ATTTGGTCTGCACAGCTTGCTGCATATTCATCCTCAAAAGATGATGGATAATATGATCGA
JMSF050F18+ ATTTGGTCTGCACAGCTTGCTGCATATTCATCCTCAAAAGATGATGGATAATATGATCGA
JMSF050C05+ ATTTGGTCTGCACAGCNTGCTGCATATTCATCCTCAAAAGATGATGGATAATATGATCGA
JMSF004J23+ ATTTGGTCTGCACAGCTTGCTGCATATTCATCCTCAAAAGATGATGGATAATATGATCGA
                      ____________________________________________________________
consensus ATTTGGTCTGCACAGCTTGCTGCATATTCATCCTCAAAAGATGATGGATAATATGATCGA
 
. : . : . : . : . : . :
JMFS107C04+ CAGGAGATTCAACTAAGATTTAGCTAGTAACTTGAATTGTCACTGAACAAAGTGCCTGTA
JMSF050F18+ CAGGAGATTCAACTAAGATTTAGCTAGTAACTTGAATTGTCACTGAACAAAGTGCCTGTA
JMSF050C05+ CAGGAGATTCAACTAAGATTTAGCTAGTAACTTGAATTGTCACTGAACAAAGTGCCTGTA
JMSF004J23+ CAGGAGATTCAACTAAGATTTAGCTAGTAACTTGAATTGTCACTGAACAAAGTGCCTGTA
                      ____________________________________________________________
consensus CAGGAGATTCAACTAAGATTTAGCTAGTAACTTGAATTGTCACTGAACAAAGTGCCTGTA
 
. : . : . : . : . : . :
JMFS107C04+ CAGCTGTCCGTGAAGGTTTACAGCATGGGTATCATCACTGTGTAATGGTGGATTGGTAGA
JMSF050F18+ CAGCTGTCCGTGAAGGTTTACAGCATGGGTATCATCACTGTGTAATGGTGGATTGGTAGA
JMSF050C05+ CAGCTGTCCGTGAAGGTTTACAGCATGGGTATCATCACTGTGTAATGGTGGATTGGTAGA
JMSF004J23+ CAGCTGTCCGTGAAGGTTTACAGCATGGGTATCATCACTGTGTAATGGTGGATTGGTAGA
                      ____________________________________________________________
consensus CAGCTGTCCGTGAAGGTTTACAGCATGGGTATCATCACTGTGTAATGGTGGATTGGTAGA
 
. : . : . : . : . : . :
JMFS107C04+ GGATGACGGAAGAGGAGAATATGCTCCGAGAGACGACACAATGGG
JMSF050F18+ GGATGACGGAAGAGGAGAATATGCTCCGAGAGACGACACAATGGGTTTGATCGGAGAGAA
JMSF050C05+ GGATGACGGAAGAGGAGAATATGCTCCGAGAGACGACACAATGGGTTTGATCGGAGAGAA
JMSF004J23+ GGATGACGGAAGAGGAGAATATGCTCCGAGAGACGACACAATGGGTTTGATCGGAGAGAA
                      ____________________________________________________________
consensus GGATGACGGAAGAGGAGAATATGCTCCGAGAGACGACACAATGGGTTTGATCGGAGAGAA
 
. : . : . : . : . : . :
JMSF050F18+ AACTTTGGATATGAGAATAGAAATTTTGAAGAATGGACGTCAAGTCT
JMSF050C05+ AACTTCGGATATGAGAATAGAAATTTTGAAGAATGGACGTCAAGTCT
JMSF004J23+ AACTTTGGATATGAGAATAGAAATTTTGAAGAATGGACGTCAAGTCTCAGCGAGTCCGTC
                      ____________________________________________________________
consensus AACTTTGGATATGAGAATAGAAATTTTGAAGAATGGACGTCAAGTCTCAGCGAGTCCGTC