Contig 004930:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN009L06Sequence618004930 (3)ref|XP_007009089.1|2e-74Microsomal signal peptidase 25 kDa subunit (SPC25) [Theobroma cacao] gb|EOY1789
JMSF003L02Sequence440004930 (3)gb|AFK49171.1|3e-40unknown [Lotus japonicus]717004930 (3)ref|XP_011084942.1|4e-80PREDICTED: probable signal peptidase complex subunit 2 [Sesamum indicum]

Alignment

This contig is upended


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rJMSF003L02- TATCGCACTATCAGGTTCCGTCGAAGCAAAGAGATTTAAGTTCCAAAGTACATATC
                      ____________________________________________________________
consensus TATCGCACTATCAGGTTCCGTCGAAGCAAAGAGATTTAAGTTCCAAAGTACATATC
 
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rJMSF003L02- ATGTGCTAGTAAAAGATGGGGCGATGCTCTCCATTTCTGCTGCTTGAATTGGGGCTCGAG
                      ____________________________________________________________
consensus ATGTGCTAGTAAAAGATGGGGCGATGCTCTCCATTTCTGCTGCTTGAATTGGGGCTCGAG
 
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rJMSF003L02- AGAGAGAGAGATTGAATTCACTTGCTCTTTTTGTTTTCTTTGGCGTAGTCGTGGATTAGT
                      ____________________________________________________________
consensus AGAGAGAGAGATTGAATTCACTTGCTCTTTTTGTTTTCTTTGGCGTAGTCGTGGATTAGT
 
. : . : . : . : . : . :
JMFN009L06+ GCTTCAACATCTTTCCAAAACAGCCCCTCCACAAGAACTCCATCCTTGGTAAACCATTGT
rJMSF003L02- GCTTCAACATCTTTCCAAAACAGCCCCTCCACAAGAACTCCATCCTTGGTAAACCATTGT
                      ____________________________________________________________
consensus GCTTCAACATCTTTCCAAAACAGCCCCTCCACAAGAACTCCATCCTTGGTAAACCATTGT
 
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JMFN009L06+ GTTACGCTCTTGGTAAGCTCCACTGGTGATTTTGCTGAGATTGACTGGGGATCTGCACTC
rJMSF003L02- GTTACGCTCTTGGTAAGCTCCACTGGTGATTTTGCTGAGATTGACTGGGGATCTGCACTC
                      ____________________________________________________________
consensus GTTACGCTCTTGGTAAGCTCCACTGGTGATTTTGCTGAGATTGACTGGGGATCTGCACTC
 
. : . : . : . : . : . :
JMFN009L06+ GCTATTGTGAGTGTATACATATCTGAGAATCTAGGCAACTTCGAAGACACGACTAAGCCA
rJMSF003L02- GCTATTGTGAGTGTATACATATCTGAGAATCTAGGCAACTTCGAAGACACGACTAAGCCA
                      ____________________________________________________________
consensus GCTATTGTGAGTGTATACATATCTGAGAATCTAGGCAACTTCGAAGACACGACTAAGCCA
 
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JMFN009L06+ GTA--------------AGCTGGAGGATAAGTGAATAGAATAGCATTCTTCTCCTTTGTG
rJMSF003L02- GTACTGTTAAAAGATCCAGCTGGAGGATAAGTGAATAGAATAGCATTCTTCTCCTTTGTG
JMSF003L02+ AGCTGGAGGATAAGTGAATAGAATAGCATTCTTCTCCTTTGTG
                      ____________________________________________________________
consensus GTACTGTTAAAAGATCCAGCTGGAGGATAAGTGAATAGAATAGCATTCTTCTCCTTTGTG
 
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JMFN009L06+ TACACAATCACCTGCAAAATCACATTGAATATAATATACAACACGATGCAGCCGAGGAGA
rJMSF003L02- TACACAATCACCTGCAAAATCACATTGAATATAATATACAACACGATGCAGCCGAGGAGA
JMSF003L02+ TACACAATCACCTGCAAAATCACATTGAATATAATATACAACACGATGCAGCCGAGGAGA
                      ____________________________________________________________
consensus TACACAATCACCTGCAAAATCACATTGAATATAATATACAACACGATGCAGCCGAGGAGA
 
. : . : . : . : . : . :
JMFN009L06+ AAATTCCGATTATCAGGGAATTTGTTGTTGTAGAACTGAGCGAAGAGAGCAATTGTGATA
rJMSF003L02- AAATTCCGATTATCAGGGAATTTCTTGTTGTAGAACTGAGCGAAGAGAGCAATTGTGATA
JMSF003L02+ AAATTCCGATTATCAGGGAATTTCTTGTTGTAGAACTGAGCGAAGAGAGCAATTGTGATA
                      ____________________________________________________________
consensus AAATTCCGATTATCAGGGAATTTCTTGTTGTAGAACTGAGCGAAGAGAGCAATTGTGATA
 
. : . : . : . : . : . :
JMFN009L06+ ATAACGACCCCAAGCAACAATCTAATGTTGCTCAGCCTCACATCCTCCGTGTACCCCTTG
rJMSF003L02- ATAACGACCCCAAGCAACAATCTAATGTTGCT-AGCCTCACATCCTCCGTGTACCCCTTG
JMSF003L02+ ATAACGACCCCAAGCAACAATCTAATGTTGCT-AGCCTCACATCCTCCGTGTACCCCTTG
                      ____________________________________________________________
consensus ATAACGACCCCAAGCAACAATCTAATGTTGCT-AGCCTCACATCCTCCGTGTACCCCTTG
 
. : . : . : . : . : . :
JMFN009L06+ CTCGTCACGATCTCAGAAACGGACTCATCGAGGAGGTGCTTGATGGAGCCATGATCCAAA
rJMSF003L02- CTCGTCACGATCTCAGAAACGGACTCATCGAGGAGGTGCTTGATGGAGCCATGATCCAAA
JMSF003L02+ CTCGTCACGATCTCAGAAACGGACTCATCGAGGAGGTGCTTGATGGAGCCATGATCCAAA
                      ____________________________________________________________
consensus CTCGTCACGATCTCAGAAACGGACTCATCGAGGAGGTGCTTGATGGAGCCATGATCCAAA
 
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JMFN009L06+ AGGTTGGCCTTTTTGGGGTTCTTCTTG
rJMSF003L02- AGGTTGGCCTTTTTGGGGTTCTTCTTGTTGGCAGAAGCTGCTGCATCTCCCTTCTTCTCC
JMSF003L02+ AGGTTGGCCTTTTTGGGGTTCTTCTTGTTGGCAGAAGCTGCTGCATCTCCCTTCTTCTCC
                      ____________________________________________________________
consensus AGGTTGGCCTTTTTGGGGTTCTTCTTGTTGGCAGAAGCTGCTGCATCTCCCTTCTTCTCC
 
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rJMSF003L02- TG
JMSF003L02+ TGCATTTTCGTAGGGTTTTTGTCGGGAGATCGATTCGATCAGTGTGCTGTGCGTGATCTC
                      ____________________________________________________________
consensus TGCATTTTCGTAGGGTTTTTGTCGGGAGATCGATTCGATCAGTGTGCTGTGCGTGATCTC