Contig 004910:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001L22Sequence289004910 (2)gb|KJB51034.1|4e-25hypothetical protein B456_008G198300 [Gossypium raimondii]739002807 (3)ref|XP_009625768.1|2e-72PREDICTED: nudix hydrolase 3 [Nicotiana tomentosiformis]
JMSF015K15Sequence471004910 (2)gb|KJB51034.1|6e-81hypothetical protein B456_008G198300 [Gossypium raimondii]759002807 (3)ref|XP_009625768.1|2e-65PREDICTED: nudix hydrolase 3 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMSF015K15+ GAA
                      ____________________________________________________________
consensus GAA
 
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JMSF015K15+ AGGTAAAGGCATCTAGAGGAATNGGATCTATTGTGGTAACCAGATATACATCATCGTATT
                      ____________________________________________________________
consensus AGGTAAAGGCATCTAGAGGAATNGGATCTATTGTGGTAACCAGATATACATCATCGTATT
 
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JMSF015K15+ CATTGTTGATGAATGTTCCATCATTGATAACACATTCTTGAAGAAAGGAGAATATCAATT
                      ____________________________________________________________
consensus CATTGTTGATGAATGTTCCATCATTGATAACACATTCTTGAAGAAAGGAGAATATCAATT
 
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JMSF015K15+ CAAATGCATCCTTTGGAAGTGTTATACCGAGTTCTTCTTGAAGCTCCCTCATAGCTGAAA
                      ____________________________________________________________
consensus CAAATGCATCCTTTGGAAGTGTTATACCGAGTTCTTCTTGAAGCTCCCTCATAGCTGAAA
 
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JMSF015K15+ CCAGAGACGAATCACCAGCAGATATATGACCAGCACTTGATGCATCCCACCGACCAGGCC
                      ____________________________________________________________
consensus CCAGAGACGAATCACCAGCAGATATATGACCAGCACTTGATGCATCCCACCGACCAGGCC
 
. : . : . : . : . : . :
JMSF015K15+ AAGAGTCCTTGCAGTCAGCACGGCATTGCAGAAGTAGCTCTTGTGTGCTTTCAGCATATA
JMSF001L22+ CAGTCAGCACGGCATTGCAGAAGTAGCTCTTGTGTGCTTTCAGCATATA
                      ____________________________________________________________
consensus AAGAGTCCTTGCAGTCAGCACGGCATTGCAGAAGTAGCTCTTGTGTGCTTTCAGCATATA
 
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JMSF015K15+ TCCACACGTAAACAGCCCGATGATAATCCCCATCTCTGTGTACATCCCCTCTTGGCTTTG
JMSF001L22+ TCCACACGTAAACAGCCCGATGATAATCCCCATCTCTGTGTACATCCCCTCTTGGCTTTG
                      ____________________________________________________________
consensus TCCACACGTAAACAGCCCGATGATAATCCCCATCTCTGTGTACATCCCCTCTTGGCTTTG
 
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JMSF015K15+ AGATTCCTGTTTTTTCACCGGTTTTAGTGAGGACATCAAGGTGCTCTACTTCCTGATGCG
JMSF001L22+ AGATTCCTGTTTTTTCACCGGTTTTAGTGAGGACATCAAGGTGCTCTACTTCCTGATGCG
                      ____________________________________________________________
consensus AGATTCCTGTTTTTTCACCGGTTTTAGTGAGGACATCAAGGTGCTCTACTTCCTGATGCG
 
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JMSF015K15+ CAGCAGCCATTGTTTTGTCTTGATAGAGAGATAGAAGTGCTGAAAG
JMSF001L22+ CAGCAGCCATTGTTTTGTCTTGATAGAGAGATAGAAGTGCTGAAAGTGAGCTGAGAGTAA
                      ____________________________________________________________
consensus CAGCAGCCATTGTTTTGTCTTGATAGAGAGATAGAAGTGCTGAAAGTGAGCTGAGAGTAA
 
. : . : . : . : . : . :
JMSF001L22+ AAATGGGTAAAGAATTTTTCTGGGTCGTCGTCGTACTGCCGTAGCTTGCGTGGGCCGCTC
                      ____________________________________________________________
consensus AAATGGGTAAAGAATTTTTCTGGGTCGTCGTCGTACTGCCGTAGCTTGCGTGGGCCGCTC