Contig 004904:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001D16Sequence223004904 (2)emb|CDO97735.1|1e-39unnamed protein product [Coffea canephora]700005547 (7)ref|NP_001234281.1|6e-101vacuolar H+-ATPase A1 subunit isoform [Solanum lycopersicum] gb|AAO23980.1| vacu
JMSF040E10Sequence638004904 (2)gb|AAA79992.1|6e-149V-ATPase 66 kDa subunit, partial [Acer pseudoplatanus]892005547 (7)ref|NP_001234281.1|1e-140vacuolar H+-ATPase A1 subunit isoform [Solanum lycopersicum] gb|AAO23980.1| vacu

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF040E10+ CAGGTCCACCAAGACATTTGACTTTACCAGCACGCTCAT
                      ____________________________________________________________
consensus CAGGTCCACCAAGACATTTGACTTTACCAGCACGCTCAT
 
. : . : . : . : . : . :
JMSF040E10+ AGAAAGATGCCAGACGAGCTGCCAGATAAGCAGGATAACCACTATCTGCAGGCATCTCTG
                      ____________________________________________________________
consensus AGAAAGATGCCAGACGAGCTGCCAGATAAGCAGGATAACCACTATCTGCAGGCATCTCTG
 
. : . : . : . : . : . :
JMSF040E10+ CCAATCGACCAGAAATTTCACGCAGTGCTTCGGCCCAACGAGAAGTAGAATCTGCCATCA
                      ____________________________________________________________
consensus CCAATCGACCAGAAATTTCACGCAGTGCTTCGGCCCAACGAGAAGTAGAATCTGCCATCA
 
. : . : . : . : . : . :
JMSF040E10+ TACTCACATTGTACCCCATGTCTCTGAAATATTCAGCTATAGTAATTCCCGTATAAATTG
                      ____________________________________________________________
consensus TACTCACATTGTACCCCATGTCTCTGAAATATTCAGCTATAGTAATTCCCGTATAAATTG
 
. : . : . : . : . : . :
JMSF040E10+ AAGCCTCACGGGCAGCCACAGGCATGTTAGAAGTATTCGCAACAAGAGTTGTACGTTTCA
                      ____________________________________________________________
consensus AAGCCTCACGGGCAGCCACAGGCATGTTAGAAGTATTCGCAACAAGAGTTGTACGTTTCA
 
. : . : . : . : . : . :
JMSF040E10+ TGACAGATTCCTCACGGCCATCTGGCAATGTCATAGTCAATTGTGGGAAATCCATGAGCA
                      ____________________________________________________________
consensus TGACAGATTCCTCACGGCCATCTGGCAATGTCATAGTCAATTGTGGGAAATCCATGAGCA
 
. : . : . : . : . : . :
JMSF040E10+ CCTCTGCCATTTCATTTCCTCTTTCCCCACAACCAACATAAACAACAGTATCTGAGTTGG
                      ____________________________________________________________
consensus CCTCTGCCATTTCATTTCCTCTTTCCCCACAACCAACATAAACAACAGTATCTGAGTTGG
 
. : . : . : . : . : . :
JMSF040E10+ AGTACTTGGAGAGGGCCTGACTAATCACTGTTTTCCCACAGCCAAATGCACCAGGAATTG
JMSF001D16+ TGACTAATCACTGTTTTCCCACAGCCAAATGCACCAGGAATTG
                      ____________________________________________________________
consensus AGTACTTGGAGAGGGCCTGACTAATCACTGTTTTCCCACAGCCAAATGCACCAGGAATTG
 
. : . : . : . : . : . :
JMSF040E10+ CACAAGTACCCCCAAGCACCGAAGGAAATAGGGCATCAAGAACACGCTGCCCAGTAAGAA
JMSF001D16+ CACAAGTACCCCCAAGCACCGAAGGAAATAGGGCATCAAGAACACGCTGCCCAGTAAGAA
                      ____________________________________________________________
consensus CACAAGTACCCCCAAGCACCGAAGGAAATAGGGCATCAAGAACACGCTGCCCAGTAAGAA
 
. : . : . : . : . : . :
JMSF040E10+ GAGGGGTATCAGCCGCAAGCTTTTCTGCAACAGGCCTGGGAGTACGTACAGGCCAAGTCT
JMSF001D16+ GAGGGGTATCAGCCGCAAGCTTTTCTGCAACAGGCCTGGGAGTACGTACAGGCCAAGTCT
                      ____________________________________________________________
consensus GAGGGGTATCAGCCGCAAGCTTTTCTGCAACAGGCCTGGGAGTACGTACAGGCCAAGTCT
 
. : . : . : . : . : . :
JMSF040E10+ GAAGCATGGTATACTGCTTTTTGACACCTTGAAACTCAAGTTCAAGAAC
JMSF001D16+ GAAGCATGGTATACTGCTTTTTGACACCTTGAAACTCAAGTTCAAGAACCAGTGTCCTTT
                      ____________________________________________________________
consensus GAAGCATGGTATACTGCTTTTTGACACCTTGAAACTCAAGTTCAAGAACCAGTGTCCTTT