Contig 004890:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS110H07Sequence264004890 (3)
JMFS162B12Sequence552004890 (3)ref|XP_006346707.1|2e-08PREDICTED: pumilio homolog 1-like [Solanum tuberosum]
JMFS169C07Sequence609004890 (3)ref|XP_009795986.1|7e-11PREDICTED: pumilio homolog 1-like [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS169C07+                                                 CCAGTCCTCCCTGGACAGCAGA
                      ____________________________________________________________
consensus                                                   CCAGTCCTCCCTGGACAGCAGA
 
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JMFS169C07+           GGCGGAGGAAGCCGAGGGTTTAGATTCACATTCGAGTAGTAATACGAAATGTACGCAGGA
                      ____________________________________________________________
consensus             GGCGGAGGAAGCCGAGGGTTTAGATTCACATTCGAGTAGTAATACGAAATGTACGCAGGA
 
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JMFS169C07+           TCAGACCTGAGCTCCTCCTCTGAAACTCCACTCAAACCACCGCCTAACAGACGGCCAAAG
JMFS162B12+                                                          CAGACGGCCAAAG
                      ____________________________________________________________
consensus             TCAGACCTGAGCTCCTCCTCTGAAACTCCACTCAAACCACCGCCTAACAGACGGCCAAAG
 
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JMFS169C07+           GCGCTCAACGATCCTTCCACCGTCGGTGGAGCCGAGCCGCTCCTGTAAATGCTCAGCTCT
JMFS162B12+           GCGCTCAACGATCCTTCCACCGTCGGTGGAGCCGAGCCGCTCCTGTAAATGCTCAGCTCT
                      ____________________________________________________________
consensus             GCGCTCAACGATCCTTCCACCGTCGGTGGAGCCGAGCCGCTCCTGTAAATGCTCAGCTCT
 
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JMFS169C07+           CGCTCTAGATCATTCGCCTCCTCTAGCTGCCGCCTCTGCTGCTCCCTCAGCAGCAACTCC
JMFS162B12+           CGCTCTAGATCATTCGCCTCCTCTAGCTGCCGCCTCTGCTGCTCCCTCAGCAGCAACTCC
                      ____________________________________________________________
consensus             CGCTCTAGATCATTCGCCTCCTCTAGCTGCCGCCTCTGCTGCTCCCTCAGCAGCAACTCC
 
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JMFS169C07+           AACTCTTCGCCAAAATCGCTGCCACTCGCGAGCATCCCGATATCCGACATCATCTTAGTA
JMFS162B12+           AACTCTTCGCCAAAATCGCTGCCACTCGCGAGCATCCCGATATCCGACATCATCTTAGTA
                      ____________________________________________________________
consensus             AACTCTTCGCCAAAATCGCTGCCACTCGCGAGCATCCCGATATCCGACATCATCTTAGTA
 
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JMFS169C07+           TAGTTATCAGTAATCATCTAAACAATACAGACGCATAAAAATAAAAATTACAAAAAGCAT
JMFS162B12+           TAGTTATCAGTAATCATCTAAACAATACAGACGCATAAAAATAAAAATTACAAAAAGCAT
                      ____________________________________________________________
consensus             TAGTTATCAGTAATCATCTAAACAATACAGACGCATAAAAATAAAAATTACAAAAAGCAT
 
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JMFS169C07+           TAACAGAACCCAAAAAGGGCCTCTAAATTTGACAACCTTTAGCTTTTATTAACAGGAGGC
JMFS162B12+           TAACAGAACCCAAAAAGGGCCTCTAAATTTGACAACCTTTAGCTTTTATTAACAGGAGGC
                      ____________________________________________________________
consensus             TAACAGAACCCAAAAAGGGCCTCTAAATTTGACAACCTTTAGCTTTTATTAACAGGAGGC
 
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JMFS169C07+           CTTGGAATTTATCCAAAAATTAAAAAGAGCTCGACAAACAAACTCATAAAAATTCCATCT
JMFS110H07+                  TTTATCCAAAAATTATATATAGCTCGTCTAACAGACTCATGAACATTCCATCT
JMFS162B12+           CTTGGAATTTATCCAAAAATTAAAAAGAGCTCGACAAACAAACTCATAAAAATTCCATCT
                      ____________________________________________________________
consensus             CTTGGAATTTATCCAAAAATTAAAAAGAGCTCGACAAACAAACTCATAAAAATTCCATCT
 
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JMFS169C07+           TTCCGCATAAAAT-CCCGATTTTAAGATACGCTGTGAGAGAAATTATTTGAGCGGAGTAT
JMFS110H07+           TTGCGCATAAAGTGCCCGATTTTAAGATACGCTGTGAGAGAAATTATTTGAGCGGAGTAA
JMFS162B12+           TTCCGCATAAAAT-CCCGATTTTAAGATACGCTGTGAGAGAAATTATTTGAGCGGAGTAT
                      ____________________________________________________________
consensus             TTCCGCATAAAAT-CCCGATTTTAAGATACGCTGTGAGAGAAATTATTTGAGCGGAGTAT
 
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JMFS169C07+           TCGATTTCACTGATAAGCAGAGAGATCAGAGTGTAAGCAGTGATCGTT            
JMFS110H07+           TCGATTTCACTGATAAGCAGAGAGATCAGAGTGTAAGCAGTGATCGTTATGAGCTGGAGC
JMFS162B12+           TCGATTTCACTGATAAGCAGAGAGATCAGAGTGTAAGCAGTGATCGTTATGAGCTGGAGC
                      ____________________________________________________________
consensus             TCGATTTCACTGATAAGCAGAGAGATCAGAGTGTAAGCAGTGATCGTTATGAGCTGGAGC
 
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JMFS110H07+           CATAGTTCTAGAGAGAGAAAACCATGGTTTT                             
JMFS162B12+           CATAGTTCTAGAGAGAGAAAGCGATGGTTTTGGAGAGAGAAAGCGAGGGTTTTGAGGAGA
                      ____________________________________________________________
consensus             CATAGTTCTAGAGAGAGAAAGCGATGGTTTTGGAGAGAGAAAGCGAGGGTTTTGAGGAGA