Contig 004879:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS151C02Sequence520004879 (2)ref|XP_004247111.1|1e-51PREDICTED: CLIP-associated protein-like [Solanum lycopersicum]
JMSF006K01Sequence424004879 (2)ref|XP_004247111.1|1e-35PREDICTED: CLIP-associated protein-like [Solanum lycopersicum]387002763 (2)ref|XP_011083102.1|8e-13PREDICTED: CLIP-associated protein isoform X2 [Sesamum indicum]

Alignment

This contig is upended


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JMSF006K01+                                                                   CTTC
JMFS151C02+                               TCAAGAAACCCCCTTTCCTGTAGCTTTTCAGAAGCTCTTC
                      ____________________________________________________________
consensus                                 TCAAGAAACCCCCTTTCCTGTAGCTTTTCAGAAGCTCTTC
 
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JMSF006K01+           TTGTCAAGTGGGATGAAACTGTTGATATTGGTTCATTTCCAACATTACTAAGGTATGAGA
JMFS151C02+           TTGTCAAGTGGGATGAAACTGTTGATATTGGTTCATTTCCAACATTACTAAGGTATGAGA
                      ____________________________________________________________
consensus             TTGTCAAGTGGGATGAAACTGTTGATATTGGTTCATTTCCAACATTACTAAGGTATGAGA
 
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JMSF006K01+           ATTTAGCAGAATTTTTTGAAACCTGGATCTGTGAGAAGATGTCAGACAAACCCAACCCAC
JMFS151C02+           ATTTAGCAGAATTTTTTGAAACCTGGATCTGTGAGAAGATGTCAGACAAACCCAACCCAC
                      ____________________________________________________________
consensus             ATTTAGCAGAATTTTTTGAAACCTGGATCTGTGAGAAGATGTCAGACAAACCCAACCCAC
 
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JMSF006K01+           CATTGCGATTATTGCCTTTCGAGATACCAGATGGTGTATCTATTAATAAGGCATTTGCAA
JMFS151C02+           CATTGCGATTATTGCCTTTCGAGATACCAGATGGTGTATCTATTAATAAGGCATTTGCAA
                      ____________________________________________________________
consensus             CATTGCGATTATTGCCTTTCGAGATACCAGATGGTGTATCTATTAATAAGGCATTTGCAA
 
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JMSF006K01+           GACTACTTGATGCGGGAACTGCAGGGGGGAAAGGTGGATCACGAGAAGATGGTGGGTCAA
JMFS151C02+           GACTACTTGATGCGGGAACTGCAGGGGGGAAAGGTGGATCACGAGAAGATGGTGGGTCAA
                      ____________________________________________________________
consensus             GACTACTTGATGCGGGAACTGCAGGGGGGAAAGGTGGATCACGAGAAGATGGTGGGTCAA
 
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JMSF006K01+           CTCCTAGATCCAGACTTGATGAACGGATTTTCCCAGATGCATCCCGGCCTTTAAGCAAGC
JMFS151C02+           CTCCTAGATCCAGACTTGATGAACGGATTTTCCCAGATGCATCCCGGCCTTTAAGCAAGC
                      ____________________________________________________________
consensus             CTCCTAGATCCAGACTTGATGAACGGATTTTCCCAGATGCATCCCGGCCTTTAAGCAAGC
 
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JMSF006K01+           TTTCTATAGCAGAAACTTTCTGTTTGCTGGCATGCAGTACACTTTCCAAGCTACGTGTTG
JMFS151C02+           TTTCTATAGCAGAAACTTTCTGTTTGCTGGCATGCAGTACACTTTCCAAGCTACGTGTTG
                      ____________________________________________________________
consensus             TTTCTATAGCAGAAACTTTCTGTTTGCTGGCATGCAGTACACTTTCCAAGCTACGTGTTG
 
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JMSF006K01+           TGCCTGTAGCCACAGGTTTCATCTGTGACAGGAGTAATCCAGAGGAGAGAGGTGTCGCAG
JMFS151C02+           TGCCTGTAGCCACAGGTTTCATCTGTGACAGGAGTAATCCAGAGGAGAGAGGTGTCGCAG
                      ____________________________________________________________
consensus             TGCCTGTAGCCACAGGTTTCATCTGTGACAGGAGTAATCCAGAGGAGAGAGGTGTCGCAG
 
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JMFS151C02+           TGGGCAAACTCGCACTTCTATCCATTGCAACTATCGCAGAGGTCCCAGAACCAGGACGGT
                      ____________________________________________________________
consensus             TGGGCAAACTCGCACTTCTATCCATTGCAACTATCGCAGAGGTCCCAGAACCAGGACGGT