Contig 004852:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS002D05Sequence574004852 (10)ref|XP_009618440.1|3e-28PREDICTED: U-box domain-containing protein 35 [Nicotiana tomentosiformis]
JMFS012D04Sequence588004852 (10)ref|XP_009618440.1|4e-30PREDICTED: U-box domain-containing protein 35 [Nicotiana tomentosiformis]
JMFS014D04Sequence682004852 (10)ref|XP_009618440.1|4e-43PREDICTED: U-box domain-containing protein 35 [Nicotiana tomentosiformis]
JMFS020E01Sequence617004852 (10)ref|XP_009618440.1|2e-34PREDICTED: U-box domain-containing protein 35 [Nicotiana tomentosiformis]
JMFS053E12Sequence515004852 (10)ref|XP_009618440.1|2e-27PREDICTED: U-box domain-containing protein 35 [Nicotiana tomentosiformis]
JMFS064H08Sequence622004852 (10)ref|XP_009618440.1|2e-35PREDICTED: U-box domain-containing protein 35 [Nicotiana tomentosiformis]
JMFS067D06Sequence627004852 (10)ref|XP_009618440.1|1e-31PREDICTED: U-box domain-containing protein 35 [Nicotiana tomentosiformis]
JMFS090B06Sequence627004852 (10)ref|XP_009618440.1|4e-37PREDICTED: U-box domain-containing protein 35 [Nicotiana tomentosiformis]
JMFS104C06Sequence599004852 (10)ref|XP_009618440.1|2e-33PREDICTED: U-box domain-containing protein 35 [Nicotiana tomentosiformis]
JMFS111A10Sequence627004852 (10)ref|XP_009618440.1|2e-34PREDICTED: U-box domain-containing protein 35 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFS014D04+                   TTCGGAACATCTAGTGACTGAATCTGACAAAGCTGTCTTCGAACAGGCACCA
                      ____________________________________________________________
consensus                     TTCGGAACATCTAGTGACTGAATCTGACAAAGCTGTCTTCGAACAGGCACCA
 
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JMFS014D04+           AGCACTATGTTCTCAATCAAATTCGCCGCAACGTAATCGCACAGAGCTCTGGTTATGTCT
JMFS090B06+                                  CGCCGCAACGTAATCGCACAGAGCTCTGGTTATGTCT
JMFS020E01+                                            TAATCGCACAGAGCTCTGGTTATGTCT
JMFS104C06+                                                              GTTATGTCT
JMFS064H08+                                            TAATCGCACAGAGCTCTGGTTATGTCT
JMFS067D06+                                            TAATCGCACAGAGCTCTGGTTATGTCT
JMFS111A10+                                            TAATCGCACAGAGCTCTGGTTATGTCT
                      ____________________________________________________________
consensus             AGCACTATGTTCTCAATCAAATTCGCCGCAACGTAATCGCACAGAGCTCTGGTTATGTCT
 
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JMFS014D04+           GCTCCTTCTATTACAACTTCATTAACTTGTATATTCTTGCGAGTGCAGAAGCAGCGGAAA
JMFS090B06+           GCTCCTTCTATTACAACTTCATTAACTTGTATATTCTTGCGAGTGCAGAAGCAGCGGAAA
JMFS020E01+           GCTCCTTCTATTACAACTTCATTAACTTGTATATTCTTGCGAGTGCAGAAGCAGCGGAAA
JMFS053E12+                                   ACTTGTATATTCTNGCGAGTGCAGAAGCAGCGGAAA
JMFS104C06+           GCTCCTTCTATTACAACTTCATTAACTTGTATATTCTTGCGAGTGCAGAAGCAGCGGAAA
JMFS064H08+           GCTCCTTCTATTACAACTTCATTAACTTGTATATTCTTGCGAGTGCAGAAGCAGCGGAAA
JMFS067D06+           GCTCCTTCTATTACAACTTCATTAACTTGTATATTCTTGCGAGTGCAGACATAGCGGAAA
JMFS012D04+                    ATTACAACTTCATTAACTTGTATATTCTTGCGAGTGCAGAAGCAGCGGAAA
JMFS002D05+                             TCATTAACTTGTATATTCTTGCGAGTGCAGAAGCAGCGGAAA
JMFS111A10+           GCTCCTTCTATTACAACTTCATTAACTTGTATATTCTTGCGAGTGCAGAAGCAGCGGAAA
                      ____________________________________________________________
consensus             GCTCCTTCTATTACAACTTCATTAACTTGTATATTCTTGCGAGTGCAGAAGCAGCGGAAA
 
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JMFS014D04+           GGAAGGAACAATTCCTTGGTTTGGCTATCAATTTGACATTTGTTTACAACTGGGTACCCA
JMFS090B06+           GGAAGGAACAATTCCTTGGTTTGGCTATCAATTTGACATTTGTTTACAACTGGGTACCCA
JMFS020E01+           GGAAGGAACAATTCCTTGGTTTGGCTATCAATTTGACATTTGTTTACAACTGGGTACCCA
JMFS053E12+           GGAAGGAACAATTCCTTGGTTTGGCTATCAATTGNACATTTGTTNACAACTGGGTACCCA
JMFS104C06+           GGAAGGAACAATTCCTTGGTTTGGCTATCAATTTGACATTTGTTTACAACTGGGTACCCA
JMFS064H08+           GGAAGGAACAATTCCTTGGTTTGGCTATCAATTTGACATTTGTTTACAACTGGGTACCCA
JMFS067D06+           GGAAGGAACAATTCCTTGGTTTGGCTATCAATTTGACATTTGTTTACAACTGGGTACCCA
JMFS012D04+           GGAAGGAACAATTCCTTGGTTTGGCTATCAATTTGACATTTGTTTACAACTGGGTACCCA
JMFS002D05+           GGAAGGAACAATTCCTTGGTTTGGCTATCAATTTGACATTTGTTTACAACTGGGTACCCA
JMFS111A10+           GGAAGGAACAATTCCTTGGTTTGGCTATCAATTTGACATTTGTTTACAACTGGGTACCCA
                      ____________________________________________________________
consensus             GGAAGGAACAATTCCTTGGTTTGGCTATCAATTTGACATTTGTTTACAACTGGGTACCCA
 
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JMFS014D04+           TCATCTATGGGATTGTTTCCCGATGATGATGAGTTAGGCTTGTGTTTGACGTTGAGGAGG
JMFS090B06+           TCATCTATGGGATTGTTTCCCGATGATGATGAGTTAGGCTTGTGTTTGACGTTGAGGAGG
JMFS020E01+           TCATCTATGGGATTGTTTCCCGATGATGATGAGTTAGGCTTGTGTTTGACGTTGAGGAGG
JMFS053E12+           TCATCTATGGGATTGTTTCCCGATGATGATGAGTTAGGCTTGTGTTTGACGTTGAGGAGG
JMFS104C06+           TCATCTATGGGATTGTTTCCCGATGATGATGAGTTAGGCTTGTGTTTGACGTTGAGGAGG
JMFS064H08+           TCATCTATGGGATTGTTTCCCGATGATGATGAGTTAGGCTTGTGTTTGACGTTGAGGAGG
JMFS067D06+           TCATCTATGGGATTGTTTCCCGATGATGATGAGTTAGGCTTGTGTTTGACGTTGAGGAGG
JMFS012D04+           TCATCTATGGGATTGTTTCCCGATGATGATGAGTTAGGCTTGTGTTTGACGTTGAGGAGG
JMFS002D05+           TCATCTATGGGATTGTTTCCCGATGATGATGAGTTAGGCTTGTGTTTGACGTTGAGGAGG
JMFS111A10+           TCATCTATGGGATTGTTTCCCGATGATGATGAGTTAGGCTTGTGTTTGACGTTGAGGAGG
                      ____________________________________________________________
consensus             TCATCTATGGGATTGTTTCCCGATGATGATGAGTTAGGCTTGTGTTTGACGTTGAGGAGG
 
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JMFS014D04+           GTGATACTCTTGCCTTTGCCAAGGGAGAATTTATCAATGGCCCATTTCAGAGCATATTGG
JMFS090B06+           GTGATACTCTTGCCTTTGCCAAGGGAGAATTTATCAATGGCCCATTTCAGAGCATATTGG
JMFS020E01+           GTGATACTCTTGCCTTTGCCAAGGGAGAATTTATCAATGGCCCATTTCAGAGCATATTGG
JMFS053E12+           GTGATACTCTTGCCTTTGCCAAGGGAGAATTTATCAATGGCCCATTTCAGAGCATATTGG
JMFS104C06+           GTGATACTCTTGCCTTTGCCAAGGGAGAATTTATCAATGGCCCATTTCAGAGCATATTGG
JMFS064H08+           GTGATACTCTTGCCTTTGCCAAGGGAGAATTTATCAATGGCCCATTTCAGAGCATATTGG
JMFS067D06+           GTGATACTCTTGCCTTTGCCAAGGGAGAATTTATCAATGGCCCATTTCAGAGCATATTGG
JMFS012D04+           GTGATACTCTTGCCTTTGCCAAGGGAGAATTTATCAATGGCCCATTTCAGAGCATATTGG
JMFS002D05+           GTGATACTCTTGCCTTTGCCAAGGGAGAATTTATCAATGGCCCATTTCAGAGCATATTGG
JMFS111A10+           GTGATACTCTTGCCTTTGCCAAGGGAGAATTTATCAATGGCCCATTTCAGAGCATATTGG
                      ____________________________________________________________
consensus             GTGATACTCTTGCCTTTGCCAAGGGAGAATTTATCAATGGCCCATTTCAGAGCATATTGG
 
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JMFS014D04+           CTGCCTTTGTCCTTATCGATTGCGACCACAATAGACTCGTCCCTCTTGGATGAATTGCTC
JMFS090B06+           CTGCCTTTGTCCTTATCGATTGCGACCACAATAGACTCGTCCCTCTTGGATGAATTGCTC
JMFS020E01+           CTGCCTTTGTCCTTATCGATTGCGACCACAATAGACTCGTCCCTCTTGGATGAATTGCTC
JMFS053E12+           CTGCCTTTGTCCTTATCGATTGCGACCACAATAGACTCGTCCCTCTTGGATGAATTGCTC
JMFS104C06+           CTGCCTTTGTCCTTATCGATTGCGACCACAATAGACTCGTCCCTCTTGGATGAATTGCTC
JMFS064H08+           CTGCCTTTGTCCTTATCGATTGCGACCACAATAGACTCGTCCCTCTTGGATGAATTGCTC
JMFS067D06+           CTGCCTTTGTCCTTATCGATTGCGACCACAATAGACTCGTCCCTCTTGGATGAATTGCTC
JMFS012D04+           CTGCCTTTGTCCTTATCGATTGCGACCACAATAGACTCGTCCCTCTTGGATGAATTGCTC
JMFS002D05+           CTGCCTTTGTCCTTATCGATTGCGACCACAATAGACTCGTCCCTCTTGGATGAATTGCTC
JMFS111A10+           CTGCCTTTGTCCTTATCGATTGCGACCACAATAGACTCGTCCCTCTTGGATGAATTGCTC
                      ____________________________________________________________
consensus             CTGCCTTTGTCCTTATCGATTGCGACCACAATAGACTCGTCCCTCTTGGATGAATTGCTC
 
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JMFS014D04+           TTTTGGCTTGCCATCATATTTGTTTGATCACCACCACGTAATACTACTAATATTAATAAA
JMFS090B06+           TTTTGGCTTGCCATCATATTTGTTTGATCACCACCACGTAATACTACTAATATTAATAAA
JMFS020E01+           TTTTGGCTTGCCATCATATTTGTTTGATCACCACCACGTAATACTACTAATATTAATAAA
JMFS053E12+           TTTTGGCTTGCCATCATATTTGTTTGATCACCACCACGTAATACTACTAATATTAATAAA
JMFS104C06+           TTTTGGCTTGCCATCATATTTGTTTGATCACCACCACGTAATACTACTAATATTAATAAA
JMFS064H08+           TTTTGGCTTGCCATCATATTTGTTTGATCACCACCACGTAATACTACTAATATTAATAAA
JMFS067D06+           TTTTGGCTTGCCATCATATTTGTTTGATCACCACCACGTAATACTACTAATATTAATAAA
JMFS012D04+           TTTTGGCTTGCCATCATATTTGTTTGATCACCACCACGTAATACTACTAATATTAATAAA
JMFS002D05+           TTTTGGCTTGCCATCATATTTGTTTGATCACCACCACGTAATACTACTAATATTAATAAA
JMFS111A10+           TTTTGGCTTGCCATCATATTTGTTTGATCACCACCACGTAATACTACTAATATTAATAAA
                      ____________________________________________________________
consensus             TTTTGGCTTGCCATCATATTTGTTTGATCACCACCACGTAATACTACTAATATTAATAAA
 
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JMFS014D04+           TGAAATCCAACAGAGATCGAAATATTTCGATCTCAGGAAATCAAATAAAAATATATGAGA
JMFS090B06+           TGAAATCCAACAGAGATCGAAATATTTCGATCTCAGGAAATCAAATAAAAATATATGAGA
JMFS020E01+           TGAAATCCAACAGAGATCGAAATATTTCGATCTCAGGAAATCAAATAAAAATATATGAGA
JMFS053E12+           TGAAATCCAACAGAGATCGAAATATTTCGATCTCAGGAAATCAAATAAAAATATATGAGA
JMFS104C06+           TGAAATCCAACAGAGATCGAAATATTTCGATCTCAGGAAATCAAATAAAAATATATGAGA
JMFS064H08+           TGAAATCCAACAGAGATCGAAATATTTCGATCTCAGGAAATCAAATAAAAATATATGAGA
JMFS067D06+           TGAAATCCAACAGAGATCGAAATATTTCGATCTCAGGAAATCAAATAAAAATATATGAGA
JMFS012D04+           TGAAATCCAACAGAGATCGAAATATTTCGATCTCAGGAAATCAAATAAAAATATATGAGA
JMFS002D05+           TGAAATCCAACAGAGATCGAAATATTTCGATCTCAGGAAATCAAATAAAAATATATGAGA
JMFS111A10+           TGAAATCCAACAGAGATCGAAATATTTCGATCTCAGGAAATCAAATAAAAATATATGAGA
                      ____________________________________________________________
consensus             TGAAATCCAACAGAGATCGAAATATTTCGATCTCAGGAAATCAAATAAAAATATATGAGA
 
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JMFS014D04+           CGAGCCAAAATATGGACAAATTAGTCGAATCTAATGATGATTATTGGGGCCTCTCCCCCC
JMFS090B06+           CGAGCCAAAATATGGACAAATTAGTCGAATCTAATGATGATTATTGGGGCCTCTCCCCCC
JMFS020E01+           CGAGCCAAAATATGGACAAATTAGTCGAATCTAATGATGATTATTGGGGCCTCTCCCCCC
JMFS053E12+           CGAGCCAAAATATGGACAAATTAGTCGAATCTAATGATGATTATTGGGGCCTCTCCCCCC
JMFS104C06+           CGAGCCAAAATATGGACAAATTAGTCGAATCTAATGATGATTATTGGGGCCTCTCCCCCC
JMFS064H08+           CGAGCCAAAATATGGACAAATTAGTCGAATCTAATGATGATTATTGGGGCCTCTCCCCCC
JMFS067D06+           CGAGCCAAAATATGGACAAATTAGTCGAATCTAATGATGATTATTGGGGCCTCTCCCCCC
JMFS012D04+           CGAGCCAAAATATGGACAAATTAGTCGAATCTAATGATGATTATTGGGGCCTCTCCCCCC
JMFS002D05+           CGAGCCAAAATATGGACAAATTAGTCGAATCTAATGATGATTATTGGGGCCTCTCCCCCC
JMFS111A10+           CGAGCCAAAATATGGACAAATTAGTCGAATCTAATGATGATTATTGGGGCCTCTCCCCCC
                      ____________________________________________________________
consensus             CGAGCCAAAATATGGACAAATTAGTCGAATCTAATGATGATTATTGGGGCCTCTCCCCCC
 
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JMFS014D04+           TCCTTATAGATATATTGGATAATGGTGAGATAGATGGGAGCTTGAGACCCCTTTTTTGTC
JMFS090B06+           TCCTTATAGATATATTGGATAATGGTGAGATAGATGGGAGCTTGAGACCCCTTTTTTGTC
JMFS020E01+           TCCTTATAGATATATTGGATAATGGTGAGATAGATGGGAGCTTGAGACCCCTTTTTTGTC
JMFS053E12+           TCCTTATAGATATATTGGATAATGGTGAGATAGATGGGAGCTTGAGACCC          
JMFS104C06+           TCCTTATAGATATATTGGATAATGGTGAGATAGATGGGAGCTTGAGACCCCTTTTTTGTC
JMFS064H08+           TCCTTATAGATATATTGGATAATGGTGAGATAGATGGGAGCTTGAGACCCCTTTTTTGTC
JMFS067D06+           TCCTTATAGATATATTGGATAATGGTGAGATAGATGGGAGCTTGAGACCCCTTTTTTGTC
JMFS012D04+           TCCTTATAGATATATTGGATAATGGTGAGATAGATGGGAGCTTGAGACCCCTTTTTTGTC
JMFS002D05+           TCCTTATAGATATATTGGATAATGGTGAGATAGATGGGAGCTTGAGACCCCTTTTTTGTC
JMFS111A10+           TCCTTATAGATATATTGGATAATGGTGAGATAGATGGGAGCTTGAGACCCCTTTTTTGTC
                      ____________________________________________________________
consensus             TCCTTATAGATATATTGGATAATGGTGAGATAGATGGGAGCTTGAGACCCCTTTTTTGTC
 
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JMFS014D04+           TTGAAATGATGTTGG                                             
JMFS090B06+           TTGAAATGATGTTGGGATGGGAGGTTCCAGGAGAGGTTTTTTGAACCTAA          
JMFS020E01+           TTGAAATGATGTTGGGATGGGAGGTTCCAGGAGAGGTTTTTTGAACCTAA          
JMFS104C06+           TTGAAATGATGTTGGGATGGGAGGTTCCAGGAGAGGTTTTTTGAACCTAA          
JMFS064H08+           TTGAAATGATGTTGGGATGGGAGGTTCCAGGAGAGGTTTTTTGAACCTAAGCTA      
JMFS067D06+           TTGAAATGATGTTGGGATGGGAGGTTCCAGGAGAGGTTTTTTGAACCTAAGCTA      
JMFS012D04+           TTGAAATGATGTTGGGATGGGAGGTTCCAGGAGAGGTTTTTTGAACCTAAGCTA      
JMFS002D05+           TTGAAATGATGTTGGGATGGGAGGTTCCAGGAGAGGTTTTTTGAACCTAAGC        
JMFS111A10+           TTGAAATGATGTTGGGATGGGAGGTTCCAGGAGAGGTTTTTTGAACCTAAGCTAGAACTA
                      ____________________________________________________________
consensus             TTGAAATGATGTTGGGATGGGAGGTTCCAGGAGAGGTTTTTTGAACCTAAGCTAGAACTA