Contig 004846:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF043E23Sequence668003397 (51)gb|AAA34099.1|1e-87plasma membrane H+ ATPase, partial [Nicotiana plumbaginifolia]622004846 (7)emb|CDP14881.1|1e-58unnamed protein product [Coffea canephora]
JMFN005B23Sequence571004846 (7)emb|CDP14881.1|9e-58unnamed protein product [Coffea canephora]
JMFS105D10Sequence502004846 (7)ref|XP_009793289.1|5e-42PREDICTED: plasma membrane ATPase 2 [Nicotiana sylvestris]
JMFS158A05Sequence338004846 (7)ref|XP_002875872.1|2e-07predicted protein [Arabidopsis lyrata subsp. lyrata] gb|EFH52131.1| predicted pr
JMSF011I22Sequence283003397 (51)ref|NP_001234775.1|3e-09plasma membrane ATPase 1 [Solanum lycopersicum] sp|P22180.1|PMA1_SOLLC RecName: 731004846 (7)gb|EYU35892.1|1e-91hypothetical protein MIMGU_mgv1a0008592mg, partial [Erythranthe guttata]
JMSF020I10Sequence668003397 (51)gb|AAA34099.1|4e-62plasma membrane H+ ATPase, partial [Nicotiana plumbaginifolia]735004846 (7)gb|EYU35892.1|2e-91hypothetical protein MIMGU_mgv1a0008592mg, partial [Erythranthe guttata]
JMSF049H19Sequence679003397 (51)gb|AAA34099.1|4e-64plasma membrane H+ ATPase, partial [Nicotiana plumbaginifolia]732004846 (7)gb|EYU35892.1|2e-92hypothetical protein MIMGU_mgv1a0008592mg, partial [Erythranthe guttata]

Alignment

This contig is upended


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rJMSF049H19+                                                                  CTAC
                      ____________________________________________________________
consensus                                                                     CTAC
 
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rJMSF049H19+          CTTCAAGTTAGCACTATCAGTCAGGCACTGATATTTGTCACGAGATCACGGAGTTGGTCA
rJMSF011I22+           TTCAAGTTAGCACTATCAGTCAGGCACTGATATTTGTCACGAGATCACGGAGTTGGTCA
rJMSF020I10+           TTCAAGTTAGCACTATCAGTCAGGCACTGATATTTGTCACGAGATCACGGAGTTGGTCA
                      ____________________________________________________________
consensus             CTTCAAGTTAGCACTATCAGTCAGGCACTGATATTTGTCACGAGATCACGGAGTTGGTCA
 
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rJMSF049H19+          TTTGTTGAACGTCCTGGTGTATTTCTTGTTGTTGCATTTGTGATTGCTCAACTAGTTGCT
rJMSF011I22+          TTTGTTGAACGTCCTGGTGTATTTCTTGTTGTTGCATTTGTGATTGCTCAACTAGTTGCT
rJMSF020I10+          TTTGTTGAACGTCCTGGTGTATTTCTTGTTGTTGCATTTGTGATTGCTCAACTAGTTGCT
                      ____________________________________________________________
consensus             TTTGTTGAACGTCCTGGTGTATTTCTTGTTGTTGCATTTGTGATTGCTCAACTAGTTGCT
 
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rJMSF049H19+          ACTCTAATTGCTGTCTACGCGAATTGGAGCTTTGCGGCGATTGAAGGCATTGGTTGGGGT
rJMSF011I22+          ACTCTAATTGCTGTCTACGCGAATTGGAGCTTTGCGGCGATTGAAGGCATTGGTTGGGGT
rJMSF020I10+          ACTCTAATTGCTGTCTACGCGAATTGGAGCTTTGCGGCGATTGAAGGCATTGGTTGGGGT
                      ____________________________________________________________
consensus             ACTCTAATTGCTGTCTACGCGAATTGGAGCTTTGCGGCGATTGAAGGCATTGGTTGGGGT
 
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rJMSF049H19+          TGGGCTGGGGTTATTTGGCTTTACAATCTTATTTTCTACATCCCCCTTGATTTCATTAAG
rJMFF043E23+                                          TTTCTACATCCCCCTTGATTTCATTAAG
rJMSF011I22+          TGGGCTGGGGTTATTTGGCTTTACAATCTTATTTTCTACATCCCCCTTGATTTCATTAAG
rJMSF020I10+          TGGGCTGGGGTTATTTGGCTTTACAATCTTATTTTCTACATCCCCCTTGATTTCATTAAG
JMFN005B23-                                       TTATTTTCTACATCCCCCTTGATTTCATTAAG
                      ____________________________________________________________
consensus             TGGGCTGGGGTTATTTGGCTTTACAATCTTATTTTCTACATCCCCCTTGATTTCATTAAG
 
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rJMSF049H19+          TTCTTCACCCGCTATGCCCTTAGTGGGAAGGCATGGGATTTGGTTCTTGAACAAAGGATT
rJMFF043E23+          TTCTTCACCCGCTATGCCCTTAGTGGGAAGGCATGGGATTTGGTTCTTGAACAAAGGATT
rJMSF011I22+          TTCTTCACCCGCTATGCCCTTAGTGGGAAGGCATGGGATTTGGTTCTTGAACAAAGGATT
rJMSF020I10+          TTCTTCACCCGCTATGCCCTTAGTGGGAAGGCATGGGATTTGGTTCTTGAACAAAGGATT
JMFN005B23-           TTCTTCACCCGCTATGCCCTTAGTGGGAAGGCATGGGATTTGGTTCTTGAACAAAGGATT
JMFS105D10-                                                 TTTGGTTCTTGAACAAAGGATT
                      ____________________________________________________________
consensus             TTCTTCACCCGCTATGCCCTTAGTGGGAAGGCATGGGATTTGGTTCTTGAACAAAGGATT
 
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rJMSF049H19+          GCTTTCACCAGGAAAAAGGATTTCGGCAAAGAACAACGTGAACTGCAATGGGCGCACACG
rJMFF043E23+          GCTTTCACCAGGAAAAAGGATTTCGGCAAAGAACAACGTGAACTGCAATGGGCGCACGCG
rJMSF011I22+          GCTTTCACCAGGAAAAAGGATTTCGGCAAAGAACAACGTGAACTGCAATGGGCGCACGCG
rJMSF020I10+          GCTTTCACCAGGAAAAAGGATTTCGGCAAAGAACAACGTGAACTGCAATGGGCGCACGCG
JMFN005B23-           GCTTTCACCAGGAAAAAGGATTTCGGCAAAGAACAACGTGAACTGCAATGGGCGCACGCG
JMFS105D10-           GCTTTCACCAGGAAAAAGGATTTCGGCAAAGAACAACGTGAACTGCAATGGGCGCACGCG
                      ____________________________________________________________
consensus             GCTTTCACCAGGAAAAAGGATTTCGGCAAAGAACAACGTGAACTGCAATGGGCGCACGCG
 
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rJMSF049H19+          CAGAGGACACTTCATGGCCTGCAAGTTCCCGACACCAAATTGTTTAACGAGGCAACTAAT
rJMFF043E23+          CAGAGGACACTTCATGGCCTGCAAGTTCCCGACACCAAATTGTTTAACGAGGCAACTAAT
rJMSF011I22+          CAGAGGACACTTCATGGCCTGCAAGTTCCCGACACCAAATTGTTTAACGAGGCAACTAAT
rJMSF020I10+          CAGAGGACACTTCATGGCCTGCAAGTTCCCGACACCAAATTGTTTAACGAGGCAACTAAT
JMFN005B23-           CAGAGGACACTTCATGGCCTGCAAGTTCCCGACACCAAATTGTTTAACGAGGCAACTAAT
JMFS105D10-           CAGAGGACACTTCATGGCCTGCAAGTTCCCGACACCAAATTGTTTAACGAGGCAACTAAT
                      ____________________________________________________________
consensus             CAGAGGACACTTCATGGCCTGCAAGTTCCCGACACCAAATTGTTTAACGAGGCAACTAAT
 
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rJMSF049H19+          TTCAGTGAACTTAATCAGCTGGCCGAGGAAGCAAAAAGGAGAGCTGAAATTGCCAGATTA
rJMFF043E23+          TTCAGTGAACTTAATCAGCTGGCCGAGGAAGCAAAAAGGAGAGCTGAAATTGCCAGATTA
rJMSF011I22+          TTCAGTGAACTTAATCAGCTGGCCGAGGAAGCAAAAAGGAGAGCTGAAATTGCCAGATTA
rJMSF020I10+          TTCAGTGAACTTAATCAGCTGGCCGAGGAAGCAAAAAGGAGAGCTGAAATTGCCAGATTA
JMFN005B23-           TTCAGTGAACTTAATCAGCTGGCCGAGGAAGCAAAAAGGAGAGCTGAAATTGCCAGATTA
JMFS158A05+                            GCTGGCCGAGGAAGCAAAAAGGAGAGCTGAAATTGCCAGATTA
JMFS105D10-           TTCAGTGAACTTAATCAGCTGGCCGAGGAAGCAAAAAGGAGAGCTGAAATTGCCAGATTA
                      ____________________________________________________________
consensus             TTCAGTGAACTTAATCAGCTGGCCGAGGAAGCAAAAAGGAGAGCTGAAATTGCCAGATTA
 
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rJMSF049H19+          CGCGAACTGCATACGCTAAAAGGTCACGTGGAATCCGTGGTGAAACTGAAAGGTCTTGAT
rJMFF043E23+          CGCGAACTGCATACGCTAAAAGGTCACGTGGAATCCGTGGTGAAACTGAAAGGTCTTGAT
rJMSF011I22+          CGCGAACTGCATACGCTAAAAGGTCACGTGGAATCCGTGGTGAAACTGAAAGGTCTTGAT
rJMSF020I10+          CGCGAACTGCATACGCTAAAAGGTCACGTGGAATCCGTGGTGAAACTGAAAGGTCTTGAT
JMFN005B23-           CGCGAACTGCATACGCTAAAAGGTCACGTGGAATCCGTGGTGAAACTGAAAGGTCTTGAT
JMFS158A05+           CGCGAACTGCATACGCTAAAAGGTCACGTGGAATCCGTGGTGAAACTGAAAGGTCTTGAT
JMFS105D10-           CGCGAACTGCATACGCTAAAAGGTCACGTGGAATCCGTGGTGAAACTGAAAGGTCTTGAT
                      ____________________________________________________________
consensus             CGCGAACTGCATACGCTAAAAGGTCACGTGGAATCCGTGGTGAAACTGAAAGGTCTTGAT
 
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rJMSF049H19+          ATAGAGACAATTCAGCAAGCCTACACCGTTTAAGGTGATAGCGAGCGAGCTTAGAACGAA
rJMFF043E23+          ATAGAGACAATTCAGCAAGCCTACACCGTTT                             
rJMSF011I22+          ATAGAGACAATTCAGCAAGCCTACACCGTTTAAGGTGATAGCGAGCGAGCTTAGAACGAA
rJMSF020I10+          ATAGAGACAATTCAGCAAGCCTACACCGTTTAAGGTGATAGCGAGCGAGCTTAGAACGAA
JMFN005B23-           ATAGAGACAATTCAGCAAGCCTACACCGTTTAAGGTGATAGCGAGCGAGCTTAGAACGAA
JMFS158A05+           ATAGAGACAATTCAGCAAGCCTACACCGTTTAAGGTGATAGCGAGCGAGCTTAGAACGAA
JMFS105D10-           ATAGAGACAATTCAGCAAGCCTACACCGTTTAAGGTGATAGCGAGCGAGCTTAGAACGAA
                      ____________________________________________________________
consensus             ATAGAGACAATTCAGCAAGCCTACACCGTTTAAGGTGATAGCGAGCGAGCTTAGAACGAA
 
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rJMSF049H19+          GACGTAAGCCGCCATGTATCAAGTTGGCCTAGCTCTAGTTCTCTGGTTTCATTTAGTATA
rJMSF011I22+          GACGTAAGCCGCCATGTATCAAGTTGGCCTAGCTCTAGTTCTCTGGTTTCATTTAGTATA
rJMSF020I10+          GACGTAAGCCGCCATGTATCAAGTTGGCCTAGCTCTAGTTCTCTGGTTTCATTTAGTATA
JMFN005B23-           GACGTAAGCCGCCATGTATCAAGTTGGCCTAGCTCTAGTTCTCTGGTTTCATTTAGTATA
JMFS158A05+           GACGTAAGCCGCCATGTATCAAGTTGGCCTAGCTCTAGTTCTCTGGTTTCATTTAGTATA
JMFS105D10-           GACGTAAGCCGCCATGTATCAAGTTGGCCTAGCTCTAGTTCTCTGGTTTCATTTAGTATA
                      ____________________________________________________________
consensus             GACGTAAGCCGCCATGTATCAAGTTGGCCTAGCTCTAGTTCTCTGGTTTCATTTAGTATA
 
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rJMSF049H19+          TTTACTTTTCATCCCATCTCCCCCTGCTATTTCCTTCACCCAGAAGGGCCAGAACATNAC
rJMSF011I22+          TTTACTTTTCATCCCATCTCCCCCTGCTATTTCCTTCACCCAGAAGGGCCAGAACATAAC
rJMSF020I10+          TTTACTTTTCATCCCATCTCCCCCTGCTATTTCCTTCACCCAGAAGGGCCAGAACATAAC
JMFN005B23-           TTTACTTTTCATCCCATCTCCCCCTGCTATTTCCTTCACCCAGAAGGGCCAGAACATAAC
JMFS158A05+           TTTACTTTTCATCCCATCTCCCCCTGCTATTTCCTTCACCCAGAAGGGCCAGAACATAAC
JMFS105D10-           TTTACTTTTCATCCCATCTCCCCCTGCTATTTCCTTCACCCAGAAGGGCCAGAACATAAC
                      ____________________________________________________________
consensus             TTTACTTTTCATCCCATCTCCCCCTGCTATTTCCTTCACCCAGAAGGGCCAGAACATAAC
 
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rJMSF049H19+          ANCAATGC                                                    
rJMSF011I22+          AACAATGCCC                                                  
rJMSF020I10+          AACAATGCCCTGAAGT                                            
JMFN005B23-           AACAATGCCCTGAAGTGGAAAACAATTTAACATTAAATATAGTAGTTTTATTGTCTGCC 
JMFS158A05+           AACAATGCCCTGAAGTGGAAACCAATTTAACATTAAATATAGTAGTTTTATTGTC     
JMFS105D10-           AACAATGCCCTGAAGTGGAAAACAATTTAACATTAAATATAGTAGTTTTATTGTCTGCCT
                      ____________________________________________________________
consensus             AACAATGCCCTGAAGTGGAAAACAATTTAACATTAAATATAGTAGTTTTATTGTCTGCCT