Contig 004814:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF024K24Sequence476004814 (8)ref|XP_010320298.1|3e-63PREDICTED: calcium-transporting ATPase 1, chloroplastic [Solanum lycopersicum]716004814 (8)ref|XP_010320298.1|2e-135PREDICTED: calcium-transporting ATPase 1, chloroplastic [Solanum lycopersicum]
JMFF038P17Sequence562004814 (8)ref|XP_010320298.1|1e-70PREDICTED: calcium-transporting ATPase 1, chloroplastic [Solanum lycopersicum]768002777 (4)ref|XP_010091239.1|3e-73hypothetical protein L484_005263 [Morus notabilis] gb|EXB43802.1| hypothetical p
JMFS026A09Sequence645004814 (8)ref|XP_010320298.1|1e-87PREDICTED: calcium-transporting ATPase 1, chloroplastic [Solanum lycopersicum]
JMFS073A09Sequence627004814 (8)ref|XP_010320298.1|3e-70PREDICTED: calcium-transporting ATPase 1, chloroplastic [Solanum lycopersicum]
JMFS074A05Sequence613004814 (8)ref|XP_010320298.1|3e-73PREDICTED: calcium-transporting ATPase 1, chloroplastic [Solanum lycopersicum]
JMSF009I09Sequence417004814 (8)emb|CDP01203.1|2e-38unnamed protein product [Coffea canephora]799002777 (4)emb|CDP01203.1|9e-61unnamed protein product [Coffea canephora]
JMSF021F07Sequence671004814 (8)ref|XP_010320298.1|3e-94PREDICTED: calcium-transporting ATPase 1, chloroplastic [Solanum lycopersicum]774002777 (4)ref|XP_010091239.1|5e-75hypothetical protein L484_005263 [Morus notabilis] gb|EXB43802.1| hypothetical p

Alignment

This contig is upended


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rJMFF024K24- AACTGTAAAGACTGTT
                      ____________________________________________________________
consensus AACTGTAAAGACTGTT
 
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rJMFF024K24- TATAATCACTCGTAGCAGTGACAAATACCACAAGCAGGATACTAGCAACAATCCCAAGTC
                      ____________________________________________________________
consensus TATAATCACTCGTAGCAGTGACAAATACCACAAGCAGGATACTAGCAACAATCCCAAGTC
 
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rJMFF024K24- CATCATGAGCACCCTTTGGCCATCCTTCAGTCAATATACCAACCACTAAAGACACAAAAG
                      ____________________________________________________________
consensus CATCATGAGCACCCTTTGGCCATCCTTCAGTCAATATACCAACCACTAAAGACACAAAAG
 
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rJMFF024K24- CACATACAGCAAGTATCATCAGTGTCGTATCTTGAAGGGCTTCCCATACGAATATCCAAA
JMFS026A09+ CAAA
JMSF021F07+ AAGGGCTTCCCATACGAATATCCAAA
                      ____________________________________________________________
consensus CACATACAGCAAGTATCATCAGTGTCGTATCTTGAAGGGCTTCCCATACGAATATCCAAA
 
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rJMFF024K24- ATCCCCTGGCTGGGCTCTCAGTAAACCTATTAATTCCATATATATCTTTTCTTCTGCTAA
JMFS026A09+ ATCCCCTGGCTGGGCTCTCAGTAAACCTATTAATTCCATATATATCTTTTCTTCTGCTAA
JMSF021F07+ ATCCCCTGGCTGGGCTCTCAGTAAACCTATTAATTCCATATATATCTTTTCTTCTGCTAA
                      ____________________________________________________________
consensus ATCCCCTGGCTGGGCTCTCAGTAAACCTATTAATTCCATATATATCTTTTCTTCTGCTAA
 
. : . : . : . : . : . :
rJMFF024K24- GAGAATCCTCAGAAGTAGAAATCCCATTTGCAACTGATGTCGAGAGCTTGTCCGCAAGGC
JMFS026A09+ GAGAATCCTCAGAAGTAGAAATCCCATTTGCAACTGATGTCGAGAGCTTGTCCGCAAGGC
JMSF021F07+ GAGAATCCTCAGAAGTAGAAATCCCATTTGCAACTGATGTCGAGAGCTTGTCCGCAAGGC
JMFF038P17+ ATGTCGAGAGCTTGTCCGCAAGGC
JMFS074A05+ AGTAGAAATCCCATTTGCAACTGATGTCGAGAGCTTGTCCGCAAGGC
JMFS073A09+ CTGATGTCGAGAGCTTGTCCGCAAGGC
                      ____________________________________________________________
consensus GAGAATCCTCAGAAGTAGAAATCCCATTTGCAACTGATGTCGAGAGCTTGTCCGCAAGGC
 
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rJMFF024K24- CGTCAACCCCACCATGAACTTTCAGCTTCTTCAAATTATGACCCTCAACAATAGAACCTA
JMFS026A09+ CGTCAACCCCACCATGAACTTTCAGCTTCTTCAAATTATGACCCTCAACAATAGAACCTA
JMSF021F07+ CGTCAACCCCACCATGAACTTTCAGCTTCTTCAAATTATGACCCTCAACAATAGAACCTA
JMFF024K24+ TCAGCTTCTTCAAATTATGACCCTCAACAATAGAACCTA
JMFF038P17+ CGTCAACCCCACCATGAACTTTCAGCTTCTTCAAATTATGACCCTCAACAATAGAACCTA
JMFS074A05+ CGTCAACCCCACCATGAACTTTCAGCTTCTTCAAATTATGACCCTCAACAATAGAACCTA
JMFS073A09+ CGTCAACCCCACCATGAACTTTCAGCTTCTTCAAATTATGACCCTCAACAATAGAACCTA
                      ____________________________________________________________
consensus CGTCAACCCCACCATGAACTTTCAGCTTCTTCAAATTATGACCCTCAACAATAGAACCTA
 
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rJMFF024K24- ACTCATCACCACATATCTGAAAGCCGGCAGCCTTGACGTCCTCAGGGACAGAGTAACTTG
JMFS026A09+ ACTCATCACCACATATCTGAAAGCCGGCAGCCTTGACGTCCTCAGGGACAGAGTAACTTG
JMSF021F07+ ACTCATCACCACATATCTGAAAGCCGGCAGCCTTGACGTCCTCAGGGACAGAGTAACTTG
JMFF024K24+ ACTCATCACCACATATCTGAAAGCCGGCAGCCTTGACGTCCTCAGGGACAGAGTAACTTG
JMFF038P17+ ACTCATCACCACATATCTGAAAGCCGGCAGCCTTGACGTCCTCAGGGACAGAGTAACTTG
JMFS074A05+ ACTCATCACCACATATCTGAAAGCCGGCAGCCTTGACGTCCTCAGGGACAGAGTAACTTG
JMFS073A09+ ACTCATCACCACATATCTGAAAGCCGGCAGCCTTGACGTCCTCAGGGACAGAGTAACTTG
                      ____________________________________________________________
consensus ACTCATCACCACATATCTGAAAGCCGGCAGCCTTGACGTCCTCAGGGACAGAGTAACTTG
 
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rJMFF024K24- CACCTTGAATAAAGCTAAGTGCAGCTTGTGAAACCAGAACAGCAATTCTTAGTTTCTCCT
JMFS026A09+ CACCTTGAATAAAGCTAAGTGCAGCTTGTGAAACCAGAACAGCAATTCTTAGTTTCTCCT
JMSF021F07+ CACCTTGAATAAAGCTAAGTGCAGCTTGTGAAACCAGAACAGCAATTCTTAGTTTCTCCT
JMFF024K24+ CACCTTGAATAAAGCTAAGTGCAGCTTGTGAAACCAGAACAGCAATTCTTAGTTTCTCCT
JMFF038P17+ CACCTTGAATAAAGCTAAGTGCAGCTTGTGAAACCAGAACAGCAATTCTTAGTTTCTCCT
JMSF009I09+ AAGCTAAGTGCAGCTTGTGAAACCAGAACAGCAATTCTTAGTTTCTCCT
JMFS074A05+ CACCTTGAATAAAGCTAAGTGCAGCTTGTGAAACCAGAACAGCAATTCTTAGTTTCTCCT
JMFS073A09+ CACCTTGAATAAAGCTAAGTGCAGCTTGTGAAACCAGAACAGCAGTTCTTAGTTTCTCCT
                      ____________________________________________________________
consensus CACCTTGAATAAAGCTAAGTGCAGCTTGTGAAACCAGAACAGCAATTCTTAGTTTCTCCT
 
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rJMFF024K24- GATTGGAGCGCTGAATAGCACGAGCTTCGAAGCGCTTGGACAGATTAGCGGTGAATCGAA
JMFS026A09+ GATTGGAGCGCTGAATAGCACGAGCTTCGAAGCGCTTGGACAGATTAGCGGTGAATCGAA
JMSF021F07+ GATTGGAGCGCTGAATAGCACGAGCTTCGAAGCGCTTGGACAGATTAGCGGTGAATCGAA
JMFF024K24+ GATTGGAGCGCTGAATAGCACGAGCTTCGAAGCGCTTGGACAGATTAGCGGTGAATCGAA
JMFF038P17+ GATTGGAGCGCTGAATAGCACGAGCTTCGAAGCGCTTGGACAGATTAGCGGTGAATCGAA
JMSF009I09+ GATTGGAGCGCTGAATAGCACGAGCTTCGAAGCGCTTGGACAGATTAGCGGTGAATCGAA
JMFS074A05+ GATTGGAGCGCTGAATAGCACGAGCTTCGAAGCGCTTGGACAGATTAGCGGTGAATCGAA
JMFS073A09+ GATTGGAGCGCTGAATAGCACGAGCTTCGAAGCGCTTGGACAGATTAGCGGTGAATCGAA
                      ____________________________________________________________
consensus GATTGGAGCGCTGAATAGCACGAGCTTCGAAGCGCTTGGACAGATTAGCGGTGAATCGAA
 
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rJMFF024K24- ACCTCCGCTTGCGATTCTTGACGAGCCAGCAGAGCTTCCTCCATCGCTCCAAAGCTTCCT
JMFS026A09+ ACCTCCGCTTGCGATTCTTGACGAGCCAGCAGAGCTTCCTCCATCGCTCCAAAGCTTCCT
JMSF021F07+ ACCTCCGCTTGCGATTCTTGACGAGCCAGCAGAGCTTCCTCCATCGCTCCAAAGCTTCCT
JMFF024K24+ ACCTCCGCTTGCGATTCTTGACGAGCCAGCAGAGCTTCCTCCATCGCTCCAAAGCTTCCT
JMFF038P17+ ACCTCCGCTTGCGATTCTTGACGAGCCAGCAGAGCTTCCTCCATCGCTCCAAAGCTTCCT
JMSF009I09+ ACCTCCGCTTGCGATTCTTGACGAGCCAGCAGAGCTTCCTCCATCGCTCCAAAGCTTCCT
JMFS074A05+ ACCTCCGCTTGCGATTCTTGACGAGCCAGCAGAGCTTCCTCCATCGCTCCAAAGCTTCCT
JMFS073A09+ ACCTCCGCTTGCGATTCTTGACGAGCCAGCAGAGCTTCCTCCATCGCTCCAAAGCTTCCT
                      ____________________________________________________________
consensus ACCTCCGCTTGCGATTCTTGACGAGCCAGCAGAGCTTCCTCCATCGCTCCAAAGCTTCCT
 
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rJMFF024K24- CCGATGAGTTCTTCGCCTTCACTTCCCCGTAATTCTCCTTAATATACTCCTCCATACAGA
JMFS026A09+ CCGATGAGTTCTTCGCCTTCACTTCCCCGTAATTCTCCTTAATATACTCCTCCATACAGA
JMSF021F07+ CCGATGAGTTCTTCGCCTTCACTTCCCCGTAATTCTCCTTAATATACTCCTCCATACAGA
JMFF024K24+ CCGATGAGTTCTTCGCCTTCACTTCCCCGTAATTCTCCTTAATATACTCCTCCATACAGA
JMFF038P17+ CCGATGAGTTCTTCGCCTTCACTTCCCCGTAATTCTCCTTAATATACTCCTCCATACAGA
JMSF009I09+ CCGATGAGTTCTTCGCCTTCACTTCCCCGTAATTCTCCTTAATATACTCCTCCATACAGA
JMFS074A05+ CCGATGAGTTCTTCGCCTTCACTTCCCCGTAATTCTCCTTAATATACTCCTCCATACAGA
JMFS073A09+ CCGATGAGTTCTTCGCCTTCACTTCCCCGTAATTCTCCTTAATATACTCCTCCATACAGA
                      ____________________________________________________________
consensus CCGATGAGTTCTTCGCCTTCACTTCCCCGTAATTCTCCTTAATATACTCCTCCATACAGA
 
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rJMFF024K24- TCAACTACGCAACACTACTGCTTCTTCTTCTGCTGAGAAT
JMFS026A09+ TCAACTACGCAACACTACTGCTTCTTCTTCTGCTGAGAATTTAAGAAACCTTGCACGCAC
JMSF021F07+ TCAACTACGCAACACTACTGCTTCTTCTTCTGCTGAGAATTTAAGAAACCTTGCACGCAC
JMFF024K24+ TCAACTACGCAACACTACTGCTTCTTCTTCTGCTGAGAATTTAAGAAACCTTGCACGCAC
JMFF038P17+ TCAACTACGCAACACTACTGCTTCTTCTTCTGCTGAGAATTTAAGAAACCTTGCACGCAC
JMSF009I09+ TCAACTACGCAACACTACTGCTTCTTCTTCTGCTGAGAATTTAAGAAACCTTGCACGCAC
JMFS074A05+ TCAACTACGCAACACTACTGCTTCTTCTTCTGCTGAGAATTTAAGAAACCTTGCACGCAC
JMFS073A09+ TCAACTACGCAACACTACTGCTTCTTCTTCTGCTGAGAATTTAAGAAACCTTGCACGCAC
                      ____________________________________________________________
consensus TCAACTACGCAACACTACTGCTTCTTCTTCTGCTGAGAATTTAAGAAACCTTGCACGCAC
 
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JMFS026A09+ TGCTGCAGCTGGAGCTCTGCTCCGCCGCCTGTTATACCTAAACCACTAAAACTGCCTGCT
JMSF021F07+ TGCTGCAGCTGGAGCTCTGCTCCGCCGCCTGTTATACCTAAACCACTAAAACTGCCTGCT
JMFF024K24+ TGCTGCAGCTGGAGCTCTGCTCCGCCGCCTGTTATACCTAAACCACTAAAACTGCCTGCT
JMFF038P17+ TGCTGCAGCTGGAGCTCTGCTCCGCCGCCTGTTATACCTAAACCACTAAAACTGCCTGCT
JMSF009I09+ TGCTGCAGCTGGAGCTCTGCTCCGCCGCCTGTTATACCTAAACCACTAAAACTGCCTGCT
JMFS074A05+ TGCTGCAGCTGGAGCTCTGCTCCGCCGCCTGTTATACCTAAACCACTAAAACTGCCTGCT
JMFS073A09+ TGCTGCAGCTGGAGCTCTGCTCCGCCGCCTGTTATACCTAAACCACTAAAACTGCCTGCT
                      ____________________________________________________________
consensus TGCTGCAGCTGGAGCTCTGCTCCGCCGCCTGTTATACCTAAACCACTAAAACTGCCTGCT
 
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JMFS026A09+ ATCTCCCAAAAGCAGTTGACGAATATGGAGATTTACTTTAC
JMSF021F07+ ATCTCCCAAAAGCAGTTGACGAATATGGAGATTTACTTTACTT
JMFF024K24+ ATCTCCCAAAAGCAGTT
JMFF038P17+ ATCTCCCAAAAGCAGTTGACGAATATGGAGATTTACTTTACTTTACTTCAATCTTCGC
JMSF009I09+ ATCTCCCAAAAGCAGTTGACGAATATGGAGATTTACTTTACTTTACTTCAATCTTCGCAG
JMFS074A05+ ATCTCCCAAAAGCAGTTGACGAATATGGAGATTTACTTTACTTTACTTCAATCTTCGCAG
JMFS073A09+ ATCTCCCAAAAGCAGTTGACGAATATGGAGATTTACTTTACTTTACTTCAATCTTCGCAG
                      ____________________________________________________________
consensus ATCTCCCAAAAGCAGTTGACGAATATGGAGATTTACTTTACTTTACTTCAATCTTCGCAG
 
. : . : . : . : . : . :
JMSF009I09+ TGAAGTC
JMFS074A05+ TGAAGTCGAAGATAAAAAGTGTATTC
JMFS073A09+ TGAAGTCGAAGATAAAAAGTGTATTCTATTCTATTCTTTATGTTCGTGAATCGTGACTGA
                      ____________________________________________________________
consensus TGAAGTCGAAGATAAAAAGTGTATTCTATTCTATTCTTTATGTTCGTGAATCGTGACTGA