clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFS040A02 | Sequence | 353 | 004789 (3) | ref|XP_009592651.1| | 5e-07 | PREDICTED: uncharacterized protein LOC104089453 isoform X1 [Nicotiana tomentosi | |||||
JMSF040D05 | Sequence | 689 | 000938 (2) | ref|XP_009592652.1| | 4e-17 | PREDICTED: phosphatidylcholine transfer protein-like isoform X2 [Nicotiana tome | 889 | 004789 (3) | ref|XP_009793255.1| | 6e-69 | PREDICTED: uncharacterized protein LOC104240177 isoform X1 [Nicotiana sylvestri |
JMSF043M02 | Sequence | 743 | 000938 (2) | ref|XP_009592652.1| | 3e-22 | PREDICTED: phosphatidylcholine transfer protein-like isoform X2 [Nicotiana tome | 673 | 004789 (3) | ref|XP_009793255.1| | 6e-52 | PREDICTED: uncharacterized protein LOC104240177 isoform X1 [Nicotiana sylvestri |
This contig is upended
. : . : . : . : . : . :
rJMSF040D05+ TTAGTTGCAT
____________________________________________________________
consensus TTAGTTGCAT
. : . : . : . : . : . :
rJMSF040D05+ GATTCATTGACCATGTTGCCAAANCATTATCTGTAAATTATCATTACTTTTCTGCCCTTC
____________________________________________________________
consensus GATTCATTGACCATGTTGCCAAANCATTATCTGTAAATTATCATTACTTTTCTGCCCTTC
. : . : . : . : . : . :
rJMSF040D05+ TGCCAGTTTTTATTACTGTTTGGTGGCTATGTCTAATAAATTTTGCATATGGTGATGATT
____________________________________________________________
consensus TGCCAGTTTTTATTACTGTTTGGTGGCTATGTCTAATAAATTTTGCATATGGTGATGATT
. : . : . : . : . : . :
rJMSF040D05+ AGGAGTGTGAACATCCTTTAATCCCAAGACAGAAGAAGTATGTACGGGTTGCACTGTTCA
____________________________________________________________
consensus AGGAGTGTGAACATCCTTTAATCCCAAGACAGAAGAAGTATGTACGGGTTGCACTGTTCA
. : . : . : . : . : . :
rJMSF040D05+ GATCTGGTTGGAGAATCAAGAAAGTTTCTGGTAGGAATGCCTGTGAGATCAAAATGGTGT
rJMSF043M02+ TCTGGTAGGAATGCCTGTGAGATCAAAATGGTGT
____________________________________________________________
consensus GATCTGGTTGGAGAATCAAGAAAGTTTCTGGTAGGAATGCCTGTGAGATCAAAATGGTGT
. : . : . : . : . : . :
rJMSF040D05+ ACCAAGAAGATTCTGGTATGAATGTTGAAATGGCAAGGCTAGCATTTGCAAAGGGCATAT
rJMSF043M02+ ACCAAGAAGATTCTGGTATGAATGTTGAAATGGCAAGGCTAGCATTTGCAAAGGGCATAT
____________________________________________________________
consensus ACCAAGAAGATTCTGGTATGAATGTTGAAATGGCAAGGCTAGCATTTGCAAAGGGCATAT
. : . : . : . : . : . :
rJMSF040D05+ GGAGTTATATTTGCAAGATGCATACTGCACTTCGTAAATACTCAACTATTGGCCATTCTC
rJMSF043M02+ GGAGTTATATTTGCAAGATGCATACTGCACTTCGTAAATACTCAACTATTGGCCATTCTC
____________________________________________________________
consensus GGAGTTATATTTGCAAGATGCATACTGCACTTCGTAAATACTCAACTATTGGCCATTCTC
. : . : . : . : . : . :
rJMSF040D05+ AACTAAATTCTGGTGTGACAGCAATCACATTAATTCAGAAGGTCCCACCTGAATTGGAGG
rJMSF043M02+ AACTAAATTCTGGTGTGACAGCAATCACATTAATTCAGAAGGTCCCACCTGAATTGGAGG
____________________________________________________________
consensus AACTAAATTCTGGTGTGACAGCAATCACATTAATTCAGAAGGTCCCACCTGAATTGGAGG
. : . : . : . : . : . :
rJMSF040D05+ CTATTAGCAACACAACCGACGCAATACATCCCAGAACCTCCACAAGCAGTGCACACCTCC
rJMSF043M02+ CTATTAGCAACACAACCGACGCAATACATCCCAGAACCTCCACAAGCAGTGCACACCTCC
____________________________________________________________
consensus CTATTAGCAACACAACCGACGCAATACATCCCAGAACCTCCACAAGCAGTGCACACCTCC
. : . : . : . : . : . :
rJMSF040D05+ ATCATGAATTGCCACATGAAACGAGTGCAAGGAAATTATTGAGTAAGCCATCAATTAAAT
rJMSF043M02+ ATCATGAATTGCCACATGAAACGAGTGCAAGGAAATTATTGAGTAAGCCATCAATTAAAT
____________________________________________________________
consensus ATCATGAATTGCCACATGAAACGAGTGCAAGGAAATTATTGAGTAAGCCATCAATTAAAT
. : . : . : . : . : . :
rJMSF040D05+ TGATGAAAAGTGCATTTATTCTAATTGGAGGCGCAATCTGTTTGTCTCGCGGCCATTCCA
rJMSF043M02+ TGATGAAAAGTGCATTTATTCTAATTGGAGGCGCAATCTGTTTGTCTCGCGGCCATTCCA
JMFS040A02- AAGTGCATTTATTCTAATTGGAGGCGCAATCTGTTTGTCTCGCGGCCATTCCA
____________________________________________________________
consensus TGATGAAAAGTGCATTTATTCTAATTGGAGGCGCAATCTGTTTGTCTCGCGGCCATTCCA
. : . : . : . : . : . :
rJMSF040D05+ ACTTGGGCGTGAAGGTCGCCATGGCATGCATCTTGGGGAATCTCACCAAACAAAATGCTT
rJMSF043M02+ ACTTGGGCGTGAAGGTCGCCATGGCATGCATCTTGGGGAATCTCACCAAACAAAATGCTT
JMFS040A02- ACTTGGGCGTGAAGGTCGCCATGGCATGCATCTTGGGGAATCTCACCAAACAAAATGCTT
____________________________________________________________
consensus ACTTGGGCGTGAAGGTCGCCATGGCATGCATCTTGGGGAATCTCACCAAACAAAATGCTT
. : . : . : . : . : . :
rJMSF040D05+ CAGCCTTCAAGAAGCAAAAGAGCAAGGAGAGAGTCGGCCTAGCAGGTCTTCCTAGTCATG
rJMSF043M02+ CAGCCTTCGAGAAGCAAAAGAGCAAGGAGAGAGTCGGCCTAGCAGGTCTTCCTAGTCATG
JMFS040A02- CAGCCTTCAAGAAGCAAAAGAGCAAGGAGAGAGTCGGCCTAGCAGGTCTTCCTAGTCATG
____________________________________________________________
consensus CAGCCTTCAAGAAGCAAAAGAGCAAGGAGAGAGTCGGCCTAGCAGGTCTTCCTAGTCATG
. : . : . : . : . : . :
rJMSF040D05+ AAGATTGTGGGACAATCCAGTAACCTACCCATAGCTGATGGCATCGGCTTTGTATAATTT
rJMSF043M02+ AAGATTGTGGGACAATCCAGTAACCTACCCATAGCTGATGGCATCGGCTTTGTATAATTT
JMFS040A02- AAGATTGTGGGACAATCCAGTAACCTACCCATAGCTGATGGCATCGGCTTTGTATAATTT
____________________________________________________________
consensus AAGATTGTGGGACAATCCAGTAACCTACCCATAGCTGATGGCATCGGCTTTGTATAATTT
. : . : . : . : . : . :
rJMSF040D05+ TGGGCTGCCTAATTGCTGGAAATTGCTAGTTTAACATTGTTTCTTTGTCTGCTACCTTGT
rJMSF043M02+ TGGGCTGCCTAATTGCTGGAAATTGCTAGTTTAACATTGTTTCTTTGTCTGCTACCTTGT
JMFS040A02- TGGGCTGCCTAATTGCTGGAAATTGCTAGTTTAACATTGTTTCTTTGTCTGCTACCTTGT
____________________________________________________________
consensus TGGGCTGCCTAATTGCTGGAAATTGCTAGTTTAACATTGTTTCTTTGTCTGCTACCTTGT
. : . : . : . : . : . :
rJMSF040D05+ ATTTGTAATTATAATTTGATCTGTCCATTATGAGATCAT
rJMSF043M02+ ATTTGTAATTATAATTTGATCTGTCCATTATGAGATCAT
JMFS040A02- ATTTGTAATTATAATTTGATCTGTCCATTATGAGATCATTTAAAATATAATGTATAGTTT
____________________________________________________________
consensus ATTTGTAATTATAATTTGATCTGTCCATTATGAGATCATTTAAAATATAATGTATAGTTT