Contig 004769:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS017H11Sequence619004769 (4)ref|XP_010318758.1|344PREDICTED: topless-related protein 4 isoform X2 [Solanum lycopersicum]
JMFS115B07Sequence627004769 (4)ref|XP_006364222.1|2e-120PREDICTED: topless-related protein 4-like [Solanum tuberosum]
JMFS151B08Sequence611004769 (4)ref|XP_006364222.1|1e-130PREDICTED: topless-related protein 4-like [Solanum tuberosum]
JMFS159E06Sequence535004769 (4)ref|XP_009613434.1|318PREDICTED: topless-related protein 4 isoform X1 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFS115B07+                                               TTATAGTGAGGGCATACTGAATAG
                      ____________________________________________________________
consensus                                                 TTATAGTGAGGGCATACTGAATAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS115B07+           ACAGGTGCCTCATGACCCTCAAAAATATATTGCTTGGAGCCAGAGGCAGCATCCCATACC
                      ____________________________________________________________
consensus             ACAGGTGCCTCATGACCCTCAAAAATATATTGCTTGGAGCCAGAGGCAGCATCCCATACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS115B07+           TTAATAGTCTTGTCCTCTCCACAAGTTATGACACACAATTGTTTATTCGGATGAGAGAAT
                      ____________________________________________________________
consensus             TTAATAGTCTTGTCCTCTCCACAAGTTATGACACACAATTGTTTATTCGGATGAGAGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS115B07+           GCCAGATCACTAACATTTCCAACATGTGCATCAATCTCAAGGTGGTTGCGTAGATCATCA
                      ____________________________________________________________
consensus             GCCAGATCACTAACATTTCCAACATGTGCATCAATCTCAAGGTGGTTGCGTAGATCATCA
 
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JMFS115B07+           CCTCCATGGTAAGAGAACAAATGAATAATGTGCATCGAGTATGCAACACCTAAAAGAGTG
                      ____________________________________________________________
consensus             CCTCCATGGTAAGAGAACAAATGAATAATGTGCATCGAGTATGCAACACCTAAAAGAGTG
 
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JMFS115B07+           CCATCAGGACTCCAGGCCACACGGTTGACAGATGCAGTACATTCATTGGCCAACGAAGCT
                      ____________________________________________________________
consensus             CCATCAGGACTCCAGGCCACACGGTTGACAGATGCAGTACATTCATTGGCCAACGAAGCT
 
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JMFS115B07+           TGCAGAGTCAATGAACAAGCTGCAATGTCCCAAACCTTAAAACTTCTAAATGCAAGCCTC
                      ____________________________________________________________
consensus             TGCAGAGTCAATGAACAAGCTGCAATGTCCCAAACCTTAAAACTTCTAAATGCAAGCCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS115B07+           TCTCTGCTGCCAACATCCCATATAGCAATATCCCCGGTATTTGTTCCAACAAGTAGCAGA
                      ____________________________________________________________
consensus             TCTCTGCTGCCAACATCCCATATAGCAATATCCCCGGTATTTGTTCCAACAAGTAGCAGA
 
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JMFS115B07+           GTTTGTTGCACAGGGTGAAAATCCATGCTTTTAGCAGTAGAACCCTGATTCAAATTTGCT
JMFS159E06+                                                              AAATTTGCT
                      ____________________________________________________________
consensus             GTTTGTTGCACAGGGTGAAAATCCATGCTTTTAGCAGTAGAACCCTGATTCAAATTTGCT
 
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JMFS115B07+           ACTACTGTCCTGGGTAAGTCATCAGAAGAATACATCGGGCGAGCATGGTTCTGTCCAGAA
JMFS159E06+           ACTACTGTCCTGGGTAAGTCATCAGAAGAATACATCGGGCGAGCATGGTTCTGTCCAGAA
                      ____________________________________________________________
consensus             ACTACTGTCCTGGGTAAGTCATCAGAAGAATACATCGGGCGAGCATGGTTCTGTCCAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS115B07+           TACATGACAGGCAGTATATTAACAGGGAGATTGTTGGCCTCCTCAGGCATTCCAAAAGGT
JMFS159E06+           TACATGACAGGCAGTATATTAACAGGGAGATTGTTGGCCTCCTCAGGCATTCCAAAAGGT
                      ____________________________________________________________
consensus             TACATGACAGGCAGTATATTAACAGGGAGATTGTTGGCCTCCTCAGGCATTCCAAAAGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS115B07+           CTT                                                         
JMFS159E06+           CTTGGCCTCTTCAGCACCTGTTCAGAATCTGCAGTTTGATAGTCCAGTGCAGGATTATTA
                      ____________________________________________________________
consensus             CTTGGCCTCTTCAGCACCTGTTCAGAATCTGCAGTTTGATAGTCCAGTGCAGGATTATTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS159E06+           CCAGGAGGGGTCCTAGGACGCTTTAACATAGATGCAGCATTATTAGGAGGGCTTAGACCT
                      ____________________________________________________________
consensus             CCAGGAGGGGTCCTAGGACGCTTTAACATAGATGCAGCATTATTAGGAGGGCTTAGACCT
 
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JMFS159E06+           ATTGGCCCACCAGAAACAGCTGGATGTGGCATAGAGGGTGGATTGGTCATCCATCCTCCA
                      ____________________________________________________________
consensus             ATTGGCCCACCAGAAACAGCTGGATGTGGCATAGAGGGTGGATTGGTCATCCATCCTCCA
 
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JMFS159E06+           AGAGATGAAGCAATTGGTGCAGGTGCTGGCTGAAATGGACCATGGGCCCCTAGAGGTGGG
                      ____________________________________________________________
consensus             AGAGATGAAGCAATTGGTGCAGGTGCTGGCTGAAATGGACCATGGGCCCCTAGAGGTGGG
 
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JMFS159E06+           AAGCCGCCCACTTTAGGCATGGAACCAATCAGAGGATTAGTGACAGGAGATGGAGCCCGA
JMFS151B08+                                                           GATGGAGCCCGA
                      ____________________________________________________________
consensus             AAGCCGCCCACTTTAGGCATGGAACCAATCAGAGGATTAGTGACAGGAGATGGAGCCCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS159E06+           GCACCATTTGGTTGCCCACAAGTGTGGTCTACAAAGAGGGTCTTTATATCAGGATTAGGC
JMFS151B08+           GCACCATTTGGTTGCCCACAAGTGTGGTCTACAAAGAGGGTCTTTATATCAGGATTAGGC
                      ____________________________________________________________
consensus             GCACCATTTGGTTGCCCACAAGTGTGGTCTACAAAGAGGGTCTTTATATCAGGATTAGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS159E06+           TTTGGGCTCTTGCACACCTGGTGCTGCCAATTCAGACTCTGGTTGA              
JMFS151B08+           TTTGGGCTCTTGCACAGCTGGTGCTGCCAATTCAGACTCTGGTTGATTAGTGTCCGCAGC
JMFS017H11+                                                    GTTGATTAGTGTCCGCAGC
                      ____________________________________________________________
consensus             TTTGGGCTCTTGCACAGCTGGTGCTGCCAATTCAGACTCTGGTTGATTAGTGTCCGCAGC
 
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JMFS151B08+           CGAGAGTTCTTTAAGCTAGGAAACTGAAGCTTATCGCGAAAAAGTGGATTTGCCTCGATT
JMFS017H11+           CGAGAGTTCTTTAAGCTAGGAAACTGAAGCTTATCGCGAAAAAGTGGATTTGCCTCGATT
                      ____________________________________________________________
consensus             CGAGAGTTCTTTAAGCTAGGAAACTGAAGCTTATCGCGAAAAAGTGGATTTGCCTCGATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS151B08+           AACTTTTTTAACTCAACAAGCATTATGGCCCTAGCTGATTTGGTATCCCCATACTTCGAT
JMFS017H11+           AACTTTTTTAACTCAACAAGCATTATGGCCCTAGCTGATTTGGTATCCCCATACTTCGAT
                      ____________________________________________________________
consensus             AACTTTTTTAACTCAACAAGCATTATGGCCCTAGCTGATTTGGTATCCCCATACTTCGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS151B08+           AGCTGTTCGTTCTCCCTAAAGTTGTTCAGAGTCAGAAGAAGAGTTATTTCCTTAAACAGT
JMFS017H11+           AGCTGTTCGTTCTCCCTAAAGTTGTTCAGAGTCAGAAGAAGAGTTATTTCCTTAAACAGT
                      ____________________________________________________________
consensus             AGCTGTTCGTTCTCCCTAAAGTTGTTCAGAGTCAGAAGAAGAGTTATTTCCTTAAACAGT
 
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JMFS151B08+           TCTTCATTAAAAGTGGAGAACACCTTCAAATCCTTCGTCAGAATTTCCAATGCTTTCGGT
JMFS017H11+           TCTTCATTAAAAGTGGAGAACACCTTCAAATCCTTCGTCAGAATTTCCAATGCTTTCGGT
                      ____________________________________________________________
consensus             TCTTCATTAAAAGTGGAGAACACCTTCAAATCCTTCGTCAGAATTTCCAATGCTTTCGGT
 
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JMFS151B08+           TGATCTTGCTTGTCAAGCGTCTCAAGATACTTCTGTTTCCGGATCTCAAAGAAAATTTTC
JMFS017H11+           TGATCTTGCTTGTCAAGCGTCTCAAGATACTTCTGTTTCCGGATCTCAAAGAAAATTTTC
                      ____________________________________________________________
consensus             TGATCTTGCTTGTCAAGCGTCTCAAGATACTTCTGTTTCCGGATCTCAAAGAAAATTTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS151B08+           ATCGAGTATCGGTTATCATCAACCTTGGTGAAACCAGATAAATACTTCTCTACCTCATCC
JMFS017H11+           ATCGAGTATCGGTTATCATCAACCTTGGTGAAACCAGATAAATACTTCTCTACCTCATCC
                      ____________________________________________________________
consensus             ATCGAGTATCGGTTATCATCAACCTTGGTGAAACCAGATAAATACTTCTCTACCTCATCC
 
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JMFS151B08+           CAGTCCCCATTTGTCAC                                           
JMFS017H11+           CAGTCCCCATTTGTCACAGCATCCTCAAAGTGCCTCATGTTGAAGAAGTATCCCGACTCC
                      ____________________________________________________________
consensus             CAGTCCCCATTTGTCACAGCATCCTCAAAGTGCCTCATGTTGAAGAAGTATCCCGACTCC
 
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JMFS017H11+           TTCTCCAACTTGTGAACTGTTTCCTTGAATTTCTCTTCATCCAAAAACTGAAGGATGAGA
                      ____________________________________________________________
consensus             TTCTCCAACTTGTGAACTGTTTCCTTGAATTTCTCTTCATCCAAAAACTGAAGGATGAGA
 
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JMFS017H11+           AAAACCAGCTCCCTGCTCAAGGAAGACATGACTTTGACTGATCAACCCCTCAGAAGACTC
                      ____________________________________________________________
consensus             AAAACCAGCTCCCTGCTCAAGGAAGACATGACTTTGACTGATCAACCCCTCAGAAGACTC
 
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JMFS017H11+           TAGAACCTCACAGATCCACGAAATTCAGCAATCAAACACTTCACAAACCGCCAGATATCA
                      ____________________________________________________________
consensus             TAGAACCTCACAGATCCACGAAATTCAGCAATCAAACACTTCACAAACCGCCAGATATCA