Contig 004739:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN038L02-                             TCCCTGCTCCACCAGCATCTATTATCTCTCTCGCTTTCTCTT
                      ____________________________________________________________
consensus                               TCCCTGCTCCACCAGCATCTATTATCTCTCTCGCTTTCTCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN038L02-           CTCTTCTCTCCTCGATCAAATCGGCTTCTCCGCCCTAAACCTCGACGCAGCAGCACTGCT
rJMFF023B08+                                                    CGACGCAGCAGCACTGCT
                      ____________________________________________________________
consensus             CTCTTCTCTCCTCGATCAAATCGGCTTCTCCGCCCTAAACCTCGACGCAGCAGCACTGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN038L02-           CAACCATGACGCTTGGCTCAGCAGGATCGAGTGTCGTGGTCCCTCGCAATTTCAGATTGT
rJMFF023B08+          CAACCATGACGCTTGGCTCAGCAGGATCGAGTGTCGTGGTCCCTCGCAATTTCAGATTGT
                      ____________________________________________________________
consensus             CAACCATGACGCTTGGCTCAGCAGGATCGAGTGTCGTGGTCCCTCGCAATTTCAGATTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN038L02-           TGGAGGAACTTGAGCGTGGAGAAAAAGGTATTGGAGATGGGACAGTGAGCTATGGTATGG
rJMFF023B08+          TGGAGGAACTTGAGCGTGGAGAAAAAGGTATTGGAGATGGGACAGTGAGCTATGGTATGG
                      ____________________________________________________________
consensus             TGGAGGAACTTGAGCGTGGAGAAAAAGGTATTGGAGATGGGACAGTGAGCTATGGTATGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN038L02-           ATGATGGAGATGATATCTACATGCGTTCTTGGACGGGCACCATTATTGGTCCCCACAATT
rJMFF023B08+          ATGATGGAGATGATATCTACATGCGTTCTTGGACGGGCACCATTATTGGTCCCCACAATT
                      ____________________________________________________________
consensus             ATGATGGAGATGATATCTACATGCGTTCTTGGACGGGCACCATTATTGGTCCCCACAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN038L02-           CTGTGCATGAAGGTCGTATATACCAGTTGAAGTTGTTTTGCGACAAAGATTACCCAGAGA
rJMFF023B08+          CTGTGCATGAAGGTCGTATATACCAGTTGAAGTTGTTTTGCGACAAAGATTACCCAGAGA
JMFN037O08+                                              TTTTGCGACAAAGATTACCCAGAGA
                      ____________________________________________________________
consensus             CTGTGCATGAAGGTCGTATATACCAGTTGAAGTTGTTTTGCGACAAAGATTACCCAGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN038L02-           ATCCACCAAGTGTTCGTTTCCATTCTCGAATCAACATGACCTGTGTGAATCATGAAACAG
rJMFF023B08+          AGCCACCAAGTGTTCGTTTCCATTCTCGAATCAACATGACCTGTGTGAATCATGAAACAG
JMFN037O08+           AGCCACCAAGTGTTCGTTTCCATTCTCGAATCAACATGACCTGTGTGAATCATGAAACAG
                      ____________________________________________________________
consensus             AGCCACCAAGTGTTCGTTTCCATTCTCGAATCAACATGACCTGTGTGAATCATGAAACAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN038L02-           GAGTGGTTGAACCAAAGAAGTTTGGTCTTCTAGCAAATTGGCAGCGAGAGTATACCATGG
rJMFF023B08+          GAGTGGTTGAACCAAAGAAGTTTGGTCTTCTAGCAAATTGGCAGCGAGAGTATACCATGG
JMFN037O08+           GAGTGGTTGAACCAAAGAAGTTTGGTCTTCTAGCAAATTGGCAGCGAGAGTATACCATGG
                      ____________________________________________________________
consensus             GAGTGGTTGAACCAAAGAAGTTTGGTCTTCTAGCAAATTGGCAGCGAGAGTATACCATGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN038L02-           AAGACATTTTGACACAGCTGAAGAAGGAGATGGCATCTCCACACAACCGCAAGCTAGTCC
rJMFF023B08+          AAGACATTTTGACACAGCTGAAGAAGGAGATGGCATCTCCACACAACCGCAAGCTAGTCC
JMFN037O08+           AAGACATTTTGACACAGCTGAAGAAGGAGATGGCATCTCCACACAACCGCAAGCTAGTCC
                      ____________________________________________________________
consensus             AAGACATTTTGACACAGCTGAAGAAGGAGATGGCATCTCCACACAACCGCAAGCTAGTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN038L02-           AGCCACCTGAAGGCACGTATTTCTAGTCTACAAGTCATGGAACCGTGTAAAACTGTAATT
rJMFF023B08+          AGCCACCTGAAGGCACGTATTTCTAGTCTACAAGTCATGGAACCGTGTAAAACTGTAATT
JMFN037O08+           AGCCACCTGAAGGCACGTATTTCTAGTCTACAAGTCATGGAACCGTGTAAAACTGTAATT
                      ____________________________________________________________
consensus             AGCCACCTGAAGGCACGTATTTCTAGTCTACAAGTCATGGAACCGTGTAAAACTGTAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN038L02-           GTGTTATGGCAGTGAAAGTTTTATGC                                  
rJMFF023B08+          GTGTTATGGCAGTGAAAGTTTTATGCAGAGGCCAACGTCCTCTGCTGATCTATCATGCCT
JMFN037O08+           GTGTTATGGCAGTGAAAGTTTTATGCAGAGGCCAACGTCCTCTGCTGATCTATCATGCC-
                      ____________________________________________________________
consensus             GTGTTATGGCAGTGAAAGTTTTATGCAGAGGCCAACGTCCTCTGCTGATCTATCATGCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF023B08+          TTCTCAATCCCCACTTCTCTGCTTTCTAGTTTCTCTGAACAACGTTATGGAACGCTGTTT
JMFN037O08+           TTCTCAATCCCCACTTCTCTGCTTTCTAGTTTCTCTGAACAACGTTATGGAACGCTGTTT
                      ____________________________________________________________
consensus             TTCTCAATCCCCACTTCTCTGCTTTCTAGTTTCTCTGAACAACGTTATGGAACGCTGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF023B08+          CTTTAAATGGGATTTTGTGTGTGCCGAACAAGTT                          
JMFN037O08+           CTTTAAATGGGATTTTGTGTGTGCCGAACAAGTTTGAAATTAAATATGAATCATTTCGTT
                      ____________________________________________________________
consensus             CTTTAAATGGGATTTTGTGTGTGCCGAACAAGTTTGAAATTAAATATGAATCATTTCGTT