Contig 004712:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007E11Sequence559000893 (9)gb|KJB20721.1|5e-39hypothetical protein B456_003G161000 [Gossypium raimondii]752004712 (11)ref|XP_010278591.1|2e-55PREDICTED: E3 ubiquitin-protein ligase At1g12760 isoform X4 [Nelumbo nucifera]
JMFF008C21Sequence564000893 (9)gb|KJB20721.1|5e-35hypothetical protein B456_003G161000 [Gossypium raimondii]724004712 (11)ref|XP_010278589.1|8e-73PREDICTED: E3 ubiquitin-protein ligase At1g12760 isoform X2 [Nelumbo nucifera]
JMFF012I23Sequence536000893 (9)gb|KJB20721.1|3e-37hypothetical protein B456_003G161000 [Gossypium raimondii]732004712 (11)ref|XP_009801536.1|6e-52PREDICTED: E3 ubiquitin-protein ligase At1g12760-like [Nicotiana sylvestris]
JMFF012M22Sequence462000893 (9)gb|KJB20721.1|5e-21hypothetical protein B456_003G161000 [Gossypium raimondii]574004712 (11)ref|XP_011463819.1|3e-38PREDICTED: E3 ubiquitin-protein ligase At1g63170 isoform X2 [Fragaria vesca sub
JMFF013G20Sequence531000893 (9)gb|KHG00577.1|1e-30hypothetical protein F383_17805 [Gossypium arboreum] gb|KHG12148.1| hypothetical799004712 (11)ref|XP_010278591.1|1e-67PREDICTED: E3 ubiquitin-protein ligase At1g12760 isoform X4 [Nelumbo nucifera]
JMFF017L21Sequence414003883 (7)ref|XP_004247299.2|3e-61PREDICTED: RNA-binding protein FUS-like, partial [Solanum lycopersicum]470004712 (11)ref|XP_010255491.1|2e-39PREDICTED: E3 ubiquitin-protein ligase At1g12760-like isoform X4 [Nelumbo nucif
JMFF023A24Sequence369000893 (9)740004712 (11)ref|XP_010278591.1|4e-52PREDICTED: E3 ubiquitin-protein ligase At1g12760 isoform X4 [Nelumbo nucifera]
JMFF040C18Sequence537000893 (9)gb|KJB20721.1|3e-37hypothetical protein B456_003G161000 [Gossypium raimondii]734004712 (11)ref|XP_009801536.1|4e-54PREDICTED: E3 ubiquitin-protein ligase At1g12760-like [Nicotiana sylvestris]
JMFF050P15Sequence610000893 (9)gb|KJB20721.1|2e-33hypothetical protein B456_003G161000 [Gossypium raimondii]568004712 (11)gb|KJB39631.1|6e-34hypothetical protein B456_007G022500 [Gossypium raimondii]
JMFN014A14Sequence606004712 (11)gb|KFK43535.1|2e-31hypothetical protein AALP_AA1G139400 [Arabis alpina]
JMSF039C14Sequence624000893 (9)gb|KJB20721.1|7e-40hypothetical protein B456_003G161000 [Gossypium raimondii]844004712 (11)ref|XP_009615319.1|2e-74PREDICTED: E3 ubiquitin-protein ligase At1g12760-like isoform X2 [Nicotiana tom

Alignment

This contig is upended


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rJMSF039C14+                                             TNTACTGGTTATGTCACTTTGGCCC
                      ____________________________________________________________
consensus                                                TNTACTGGTTATGTCACTTTGGCCC
 
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rJMFF008C21+                           ACTAGTACTGTGGCGAAGTATTTAGAATCCATAAATACGATGT
rJMSF039C14+          AATTCTCTCAGGAGGAAACTAGTACTGTGGCGAAGTATTTAGAATCCATAAATACGATGT
rJMFF013G20+                                                      TCCATAAATACGATGT
                      ____________________________________________________________
consensus             AATTCTCTCAGGAGGAAACTAGTACTGTGGCGAAGTATTTAGAATCCATAAATACGATGT
 
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rJMFF008C21+          TTTCGTTTGTATGGTGGATTATTGGGTTCTATTGGGCTTCTGTTGGCGGACAACCAATGG
rJMSF039C14+          TTTCGTTTGTATGGTGGATTATTGGGTTCTATTGGGCTTCTGTTGGCGGACAACCAATGG
rJMFF013G20+          TTTCGTTTGTATGGTGGATTATTGGGTTCTATTGGGCTTCTGTTGGCGGACAACCAATGG
rJMFF040C18+                                             GCTTCTGTTGGCGGACAACCAATGG
rJMFF007E11+                                        ATTGGGCTTCTGTTGGCGGACAACCAATGG
rJMFF012I23+                                                            CAACCAATGG
rJMFF023A24+                                                    TTGGCGGACAACCAATGG
                      ____________________________________________________________
consensus             TTTCGTTTGTATGGTGGATTATTGGGTTCTATTGGGCTTCTGTTGGCGGACAACCAATGG
 
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rJMFF008C21+          CGCAAGACTCCCCTCAGTTATACTGGGCTTCCATCATCTTCTTGGCTTTTGATGTCTTCT
rJMSF039C14+          CGCAAGACTCCCCTCAGTTATACTGGGCTTCCATCATCTTCTTGGCTTTTGATGTCTTCT
rJMFF013G20+          CGCAAGACTCCCCTCAGTTATACTGGGCTTCCATCATCTTCTTGGCTTTTGATGTCTTCT
rJMFF040C18+          CGCAAGACTCCCCTCAGTTATACTGGGCTTCCATCATCTTCTTGGCTTTTGATGTCTTCT
rJMFF007E11+          CGCAAGACTCCCCTCAGTTATACTGGGCTTCCATCATCTTCTTGGCTTTTGATGTCTTCT
rJMFF012I23+          CGCAAGACTCCCCTCAGTTATACTGGGCTTCCATCATCTTCTTGGCTTTTGATGTCTTCT
rJMFF023A24+          CGCAAGACTCCCNTCAGTTATACTGGGCTTCCATCATCTTCTTGGCTTTTGATGTCTTCT
                      ____________________________________________________________
consensus             CGCAAGACTCCCCTCAGTTATACTGGGCTTCCATCATCTTCTTGGCTTTTGATGTCTTCT
 
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rJMFF008C21+          TTGTGGTTTTCTGCATCATTTTGGCATGTGTAATTGGTCTTGGAATATGCTGTTGCCTGC
rJMSF039C14+          TTGTGGTTTTCTGCATCATTTTGGCATGTGTAATTGGTCTTGGAATATGCTGTTGCCTGC
rJMFF013G20+          TTGTGGTTTTCTGCATCATTTTGGCATGTGTAATTGGTCTTGGAATATGCTGTTGCCTGC
rJMFF040C18+          TTGTGGTTTTCTGCATCATTTTGGCATGTGTAATTGGTCTTGGAATATGCTGTTGCCTGC
rJMFF007E11+          TTGTGGTTTTCTGCATCATTTTGGCATGTGTAATTGGTCTTGGAATATGCTGTTGCCTGC
rJMFF012I23+          TTGTGGTTTTCTGCATCATTTTGGCATGTGTAATTGGTCTTGGAATATGCTGTTGCCTGC
rJMFF023A24+          TTGTGGTTTTCTGCATCATTTTGGCATGTGTAATTGGTCTTGGAATATGCTGTTGCCTGC
                      ____________________________________________________________
consensus             TTGTGGTTTTCTGCATCATTTTGGCATGTGTAATTGGTCTTGGAATATGCTGTTGCCTGC
 
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rJMFF008C21+          CTTGTATTCTTGCAGTCTTGTATGCTGTAGCTGATCAGGATGGAGCAGACCAAGAAGACA
rJMSF039C14+          CTTGTATTCTTGCAGTCTTGTATGCTGTAGCTGATCAGGATGGAGCAGACCAAGAAGACA
rJMFF013G20+          CTTGTATTCTTGCAGTCTTGTATGCTGTAGCTGATCAGGATGGAGCAGACCAAGAAGACA
rJMFF040C18+          CTTGTATTCTTGCAGTCTTGTATGCTGTAGCTGATCAGGATGGAGCAGACCAAGAAGACA
rJMFF007E11+          CTTGTATTCTTGCAGTCTTGTATGCTGTAGCTGATCAGGATGGAGCAGACCAAGAAGACA
rJMFF012I23+          CTTGTATTCTTGCAGTCTTGTATGCTGTAGCTGATCAGGATGGAGCAGACCAAGAAGACA
rJMFF012M22+                                     TAGCTGATCAGGACGGAGCAGACCAAGAAGACA
rJMFF017L21+                     GCAGTCTTGTATGCTGTAGCTGATCAGGATGGAGCAGTCCAAGAAGACA
rJMFF023A24+          CTTGTATTCTTGCAGTCTTGTATGCTGTAGCTGATCAGGATGGAGCAGACCAAGAAGACA
rJMFF050P15+                                                            CAAGAAGACA
JMFN014A14+                                                                 AAGACA
                      ____________________________________________________________
consensus             CTTGTATTCTTGCAGTCTTGTATGCTGTAGCTGATCAGGATGGAGCAGACCAAGAAGACA
 
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rJMFF008C21+          TCGAACGACTCTCGAAATATACATTTACAAGAACCATTAGTTTCGAGAATGGTGATGGCG
rJMSF039C14+          TCGAACGACTCTCGAAATATACATTTACAAGAACCATTAGTTTCGAGAATGGTGATGGCG
rJMFF013G20+          TCGAACGACTCTCGAAATATACATTTACAAGAACCATTAGTTTCGAGAATGGTGATGGCG
rJMFF040C18+          TCGAACGACTCTCGAAATATACATTTACAAGAACCATTAGTTTCGAGAATGGTGATGGCG
rJMFF007E11+          TCGAACGACTCTCGAAATATACATTTACAAGAACCATTAGTTTCGAGAATGGTGATGGCG
rJMFF012I23+          TCGAACGACTCTCGAAATATACATTTACAAGAACCATTAGTTTCGAGAATGGTGATGGCG
rJMFF012M22+          TCGAACGACTCTCGAAATATACATTTACAAGAACCATTAGTTTCGAGAATGGTGATGGCG
rJMFF017L21+          TCGACCGACTCTNGAAATATACATTTACANGAACCATTAGTTTTGAGAATGGTGATGGNG
rJMFF023A24+          TCGAACGACTCTCGAAATATACATTTACAAGAACCATTAGTTTCGAGAATGGTGATGGCG
rJMFF050P15+          TCGAACGACTCTCGAAATATACATTTACAAGAACCATTAGTTTCGAGAATGGTGATGGCG
JMFN014A14+           TCGAACGACTCTCGAAATATACATTTACAAGAACCATTAGTTTCGAGAATGGTGATGGCG
                      ____________________________________________________________
consensus             TCGAACGACTCTCGAAATATACATTTACAAGAACCATTAGTTTCGAGAATGGTGATGGCG
 
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rJMFF008C21+          AGGAGGCACACGGAAGTATTGCAGGAGTGATGACCTTATGTGGGGTGGACGTGGCCATGG
rJMSF039C14+          AGGAGGCACACGGAAGTATTGCAGGAGTGATGACCTTATGTGGGGTGGACGTGGCCATGG
rJMFF013G20+          AGGAGGCACACGGAAGTATTGCAGGAGTGATGACCTTATGTGGGGTGGACGTGGCCATGG
rJMFF040C18+          AGGAGGCACACGGAAGTATTGCAGGAGTGATGACCTTATGTGGGGTGGACGTGGCCATGG
rJMFF007E11+          AGGAGGCACACGGAAGTATTGCAGGAGTGATGACCTTATGTGGGGTGGACGTGGCCATGG
rJMFF012I23+          AGGAGGCACACGGAAGTATTGCAGGAGTGATGACCTTATGTGGGGTGGACGTGGCCATGG
rJMFF012M22+          AGGAGGCACACGGAAGTATTGCAGGAGTGATGACCTTATGTGGGGTGGACGTGGCCATGG
rJMFF017L21+          AGGAGGCACACGGAAGTATTGCAGGAGTGATGACCTTATGTGGGGTGGACGTGGCCATGG
rJMFF023A24+          AGGAGGCACACGGAAGTATTGCAGGAGTGATGACCTTATGTGGGGTGGACGTGGCCATGG
rJMFF050P15+          AGGAGGCACACGGAAGTATTGCAGGAGTGATGACCTTATGTGGGGTGGACGTGGCCATGG
JMFN014A14+           AGGAGGCACACGGAAGTATTGCAGGAGTGATGACCTTATGTGGGGTGGACGTGGCCATGG
                      ____________________________________________________________
consensus             AGGAGGCACACGGAAGTATTGCAGGAGTGATGACCTTATGTGGGGTGGACGTGGCCATGG
 
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rJMFF008C21+          GGATGGCGCACCAACTATCAGTGGACGATGCAGAGTGCTGCATATGTCTGTGTGCGTACG
rJMSF039C14+          GGATGGCGCACCAACTATCAGTGGACGATGCAGAGTGCTGCATATGTCTGTGTGCGTACG
rJMFF013G20+          GGATGGCGCACCAACTATCAGTGGACGATGCAGAGTGCTGCATATGTCTGTGTGCGTACG
rJMFF040C18+          GGATGGCGCACCAACTATCAGTGGACGATGCAGAGTGCTGCATATGTCTGTGTGCGTACG
rJMFF007E11+          GGATGGCGCACCAACTATCAGTGGACGATGCAGAGTGCTGCATATGTCTGTGTGCGTACG
rJMFF012I23+          GGATGGCGCACCAACTATCAGTGGACGATGCAGAGTGCTGCATATGTCTGTGTGCGTACG
rJMFF012M22+          GGATGGCGCACCAACTATCAGTGGACGATGCAGAGTGCTGCATATGTCTGTGTGCGTACG
rJMFF017L21+          GGATGGCGCACCAACTATCAGTGGANGATGCAGAGTGNTGCATATGTCTGTGTGCGTACG
rJMFF023A24+          GGATGGCGCACCAACTATCAGTGGACGATGCAGAGTGCTGCATATGTCTGTGTGCGTACG
rJMFF050P15+          GGATGGCGCACCAACTATCAGTGGACGATGCAGAGTGCTGCATATGTCTGTGTGCGTACG
JMFN014A14+           GGATGGCGCACCAACTATCAGTGGACGATGCAGAGTGCTGCATATGTCTGTGTGCGTACG
                      ____________________________________________________________
consensus             GGATGGCGCACCAACTATCAGTGGACGATGCAGAGTGCTGCATATGTCTGTGTGCGTACG
 
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rJMFF008C21+          AGGATGGAGCTGAACTTCGACAACTTCCCTGTGGTCACCATTTTCATTGTGCTTGTGCGG
rJMSF039C14+          AGGATGGAGCTGAACTTCGACAACTTCCCTGTGGTCACCATTTTCATTGTGCTTGTGCGG
rJMFF013G20+          AGGATGGAGCTGAACTTCGACAACTTCCCTGTGGTCACCATTTTCATTGTGCTTGTGCGG
rJMFF040C18+          AGGATGGAGCTGAACTTCGACAACTTCCCTGTGGTCACCATTTTCATTGTGCTTGTGCGG
rJMFF007E11+          AGGATGGAGCTGAACTTCGACAACTTCCCTGTGGTCACCATTTTCATTGTGCTTGTGCGG
rJMFF012I23+          AGGATGGAGCTGAACTTCGACAACTTCCCTGTGGTCACCATTTTCATTGTGCTTGTGCGG
rJMFF012M22+          AGGATGGAGCTGAACTTCGACAACTTCCCTGTGGTCACCATTTTCATTGTGCTTGTGCGG
rJMFF017L21+          AGGATGGAGCTGAACTTCGACAACTTCCCTGTGGTCACCATTTTCATTGTGCTTGTGCGG
rJMFF023A24+          AGGATGGAGCTGAACTTCGACAACTTCCCTGTGGTCACCATTTTCATTGTGCTTGTGCGG
rJMFF050P15+          AGGATGGAGCTGAACTTCGACAACTTCCCTGTGGTCACCATTTTCATTGTGCTTGTGCGG
JMFN014A14+           AGGATGGAGCTGAACTTCGACAACTTCCCTGTGGTCACCATTTTCATTGTGCTTGTGCGG
                      ____________________________________________________________
consensus             AGGATGGAGCTGAACTTCGACAACTTCCCTGTGGTCACCATTTTCATTGTGCTTGTGCGG
 
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rJMFF008C21+          ATAAGTGGCTGCAGATTAACGCCACATGTCCCCTTTGCAAGAACAGTATCA-TCAAGGGT
rJMSF039C14+          ATAAGTGGCTGCAGATTAACGCCACATGTCCCCTTTGCAAGAACAGTATCA-TCAAGGGT
rJMFF013G20+          ATAAGTGGCTGCAGATTAACGCCACATGTCCCCTTTGCAAGAACAGTATCA-TCAAGGGT
rJMFF040C18+          ATAAGTGGCTGCAGATTAACGCCACATGTCCCCTTTGCAAGAACAGTATCA-TCAAGGGT
rJMFF007E11+          ATAAGTGGCTGCAGATTAACGCCACATGTCCCCTTTGCAAGAACAGTATCA-TCAAGGGT
rJMFF012I23+          ATAAGTGGCTGCAGATTAACGCCACATGTCCCCTTTGCAAGAACAGTATCA-TCAAGGGT
rJMFF012M22+          ATAAGTGGCTGCAGATTAACGCCACATGTCCCCTTTGCAAGAACAGTATCA-TCAAGGGT
rJMFF017L21+          ATAAGTGGCTGCAGATTAACGCCACATGTCCCCTTTGCAAGAACAGTATCA-TCAAGGGT
rJMFF023A24+          ATAAGTGGCTGCAGATTAACGCCACATGTCCCCTTTGCAAGAACAGTATCA-TCAAGGGT
rJMFF050P15+          ATAAGTGGCTGCAGATTAACGCCACATGTCCCCTTTGCAAGAACAGTATCA-TCAAGGGT
JMFN014A14+           ATAAGTGGCTGCAGATTAACGCCACATGTCCCCTTTGCAAGAACAGTATCATTCAAGGGT
                      ____________________________________________________________
consensus             ATAAGTGGCTGCAGATTAACGCCACATGTCCCCTTTGCAAGAACAGTATCA-TCAAGGGT
 
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rJMFF008C21+          AGCTACCACACAAGTGGAGAGGTTTAATCTTTATGGTTTCTTGTTCCTTAATGCTGTTGT
rJMSF039C14+          AGCTACCACACAAGTGGAGAGGTTTAATCTTTATGGTTTCTTGTTCCTTAATGCTGTTGT
rJMFF013G20+          AGCTACCACACAAGTGGAGAGGTTTAATCTTTATGGTTTCTTGTTCCTTAATGCTGTTGT
rJMFF040C18+          AGCTACCACACAAGTGGAGAGGTTTAATCTTTATGGTTTCTTGTTCCTTAATGCTGTTGT
rJMFF007E11+          AGCTACCACACAAGTGGAGAGGTTTAATCTTTATGGTTTCTTGTTCCTTAATGCTGTTGT
rJMFF012I23+          AGCTACCACACAAGTGGAGAGGTTTAATCTTTATGGTTTCTTGTTCCTTAATGCTGTTGT
rJMFF012M22+          AGCTACCACACAAGTGGAGAGGTTTAATCTTTATGGTTTCTTGTTCCTTAATGCTGTTGT
rJMFF017L21+          AGCTACCACACAAGTGGAGAGGTTTAATCTTTATGGTTTNTTGTTCCTTAATGCNGTTGT
rJMFF023A24+          AGCTACCACACAAGTGGAGAGGTTTAATCTTTATGGTTTCTTGTTCCTTAATGCTGTTGT
rJMFF050P15+          AGCTACCACACAAGTGGAGAGGTTTAATCTTTATGGTTTCTTGTTCCTTAATGCTGTTGT
JMFN014A14+           AGCTACCACACAAGTGGAGAGGTTTAATCTTTATGGTTTCTTGTTCCTTAATGCTGTTGT
                      ____________________________________________________________
consensus             AGCTACCACACAAGTGGAGAGGTTTAATCTTTATGGTTTCTTGTTCCTTAATGCTGTTGT
 
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rJMFF008C21+          TTGAATTGCCCCCAGGCAACCTTTTGTTTCACTGTATCACCGTGTAGTGTAGATATTGTG
rJMSF039C14+          TTGAATTGCCCCCAGGCAACCTTTTGTTTCACTGTATCACCGTGTAGTGTAGATATTGTG
rJMFF013G20+          TTGAATTGCCCCCAGGCAACCTTTTGTTTCACTGTATCACCGTGTAGTGTAGATATTGTG
rJMFF040C18+          TTGAATTGCCCCCAGGCAACCTTTTGTTTCACTGTATCACCGTGTAGTGTAGATATTGTG
rJMFF007E11+          TTGAATTGCCCCCAGGCAACCTTTTGTTTCACTGTATCACCGTGTAGTGTAGATATTGTG
rJMFF012I23+          TTGAATTGCCCCCAGGCAACCTTTTGTTTCACTGTATCACCGTGTAGTGTAGATATTGTG
rJMFF012M22+          TTGAATTGCCCCCAGGCAACCTTTTGTTTCACTGTATCACCGTGTAGTGTAGATATTGTG
rJMFF017L21+          TTGAATTGCCCCCAGGCAACCTTTTGTTTCACTGTATCACCGTGTAGTGTAGATATTGTG
rJMFF023A24+          TTGAATTGCCCCCAGGCAACCTTTTGTTTCACTGTATCACCGTGTAGTGTAGATATTGTG
rJMFF050P15+          TTGAATTGCCCCCAGGCAACCTTTTGTTTCACTGTATCACCGTGTAGTGTAGATATTGTG
JMFN014A14+           TTGAATTGCCCCCAGGCAACCTTTTGTTTCACTGTATCACCGTGTAGTGTAGATATTGTG
                      ____________________________________________________________
consensus             TTGAATTGCCCCCAGGCAACCTTTTGTTTCACTGTATCACCGTGTAGTGTAGATATTGTG
 
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rJMFF008C21+          TTCACCAACTATATAAACCTCT                                      
rJMSF039C14+          TTCACCAACTATATAAACCTCTATGTATGTATGTATGTGTATATGTGTATTGGCATTCAG
rJMFF013G20+          TTCACCAACTATATAAACCTCTATGTATGTATGTATGTGTATATGTGTATTGGCATTCAG
rJMFF040C18+          TTCACCAACTATATAAACCTCTATGTATGTATGTATGTGTATATGTGTATTGGCATTCAG
rJMFF007E11+          TTCACCAACTATATAAACCTCTATGTATGTATGTATGTGTATATGTGTATTGGCATTCAG
rJMFF012I23+          TTCACCAACTATATAAACCTCTATGTATGTATGTATGTGTATATGTGTATTGGCATTCAG
rJMFF012M22+          TTCACCAACTATATAAACCTCTATGTATGTATGTATGTGTATATGTGTATTGGCATTCAG
rJMFF017L21+          TT                                                          
rJMFF023A24+          TTCACCAACTATATAAACCTCTATGTATGTATGTATGTGTATATGTGTATTGGCATTCAG
rJMFF050P15+          TTCACCAACTATATAAACCTCTATGTATGTATGTATGTGTATATGTGTATTGGCATTCAG
JMFN014A14+           TTCACCAACTATATAAACCTCTATGTATGTATGTATGTGTATATGTGTATTGGCATTCAG
                      ____________________________________________________________
consensus             TTCACCAACTATATAAACCTCTATGTATGTATGTATGTGTATATGTGTATTGGCATTCAG
 
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rJMSF039C14+          AACATGCTGATCATAGCATTGTTGTTGTCGTCCTGTTTT                     
rJMFF013G20+          AACATGCTGATCATAGCATTGTTGTTGTCGTCCTGTTTT                     
rJMFF040C18+          AACATGCTGATCATAGCATTGTTGTTGTCGTCCTGTTTTTGTAATTGGTA          
rJMFF007E11+          AACATGCTGATCATAGCATTGTTGTTGTCGTCCTGTTTTTGTAATTGGTAATTGGCAATA
rJMFF012I23+          AACATGCTGATCATAGCATTGTTGTTGTCGTCCTGTTTTTGTAATTGGTAATTGGCAATA
rJMFF012M22+          AACATGCTGATCATAGCATTGTTGTTGTCGTCCTGTTTTTGTAATTGGTAATTGGCAATA
rJMFF023A24+          AACATGCTGATCATAGCATTGTTGTTGTCGTCCTGTTTTTGTAATTGGTAATTGGCAATA
rJMFF050P15+          AACATGCTGATCATAGCATTGTTGTTGTCGTCCTGTTTTTGTAATTGGTAATTGGCAATA
JMFN014A14+           AACATGCTGATCATAGCATTGTTGTTGTCGTCCTGTTTTTGTAATTGGTAATTGGCAATA
                      ____________________________________________________________
consensus             AACATGCTGATCATAGCATTGTTGTTGTCGTCCTGTTTTTGTAATTGGTAATTGGCAATA
 
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rJMFF007E11+          TCA                                                         
rJMFF012I23+          TCA                                                         
rJMFF012M22+          TC                                                          
rJMFF023A24+          TCA                                                         
rJMFF050P15+          TCAATGAATCTCTGTTTAC                                         
JMFN014A14+           TCAATGAATCTCTGTTTACXXXXXXXXXXXXXXXXXXXXXCTCGAGACTAGTTCTCTCTC
                      ____________________________________________________________
consensus             TCAATGAATCTCTGTTTACNNNNNNNNNNNNNNNNNNNNNCTCGAGACTAGTTCTCTCTC