Contig 004710:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003B11Sequence581007281 (8)ref|XP_009782891.1|1e-112PREDICTED: eukaryotic translation initiation factor 3 subunit E [Nicotiana sylv748004710 (9)ref|XP_003519090.1|6e-117PREDICTED: eukaryotic translation initiation factor 3 subunit E-like [Glycine m
JMFF011J13Sequence544007281 (8)ref|XP_009782891.1|2e-103PREDICTED: eukaryotic translation initiation factor 3 subunit E [Nicotiana sylv734004710 (9)ref|XP_007145575.1|4e-97hypothetical protein PHAVU_007G250100g [Phaseolus vulgaris] gb|ESW17569.1| hypot
JMFF016G24Sequence300007281 (8)gb|KJB67152.1|8e-56hypothetical protein B456_010G177900 [Gossypium raimondii]705004710 (9)ref|XP_003519090.1|2e-75PREDICTED: eukaryotic translation initiation factor 3 subunit E-like [Glycine m
JMFF034L22Sequence536007281 (8)ref|XP_009782891.1|1e-101PREDICTED: eukaryotic translation initiation factor 3 subunit E [Nicotiana sylv733004710 (9)ref|XP_003519090.1|2e-116PREDICTED: eukaryotic translation initiation factor 3 subunit E-like [Glycine m
JMFN012G07Sequence528004710 (9)gb|AFK36338.1|4e-67unknown [Medicago truncatula]
JMSF030O21Sequence645007281 (8)ref|XP_009782891.1|4e-134PREDICTED: eukaryotic translation initiation factor 3 subunit E [Nicotiana sylv698004710 (9)ref|XP_003519090.1|5e-110PREDICTED: eukaryotic translation initiation factor 3 subunit E-like [Glycine m
JMSF033G15Sequence670007281 (8)ref|XP_009782891.1|7e-133PREDICTED: eukaryotic translation initiation factor 3 subunit E [Nicotiana sylv770004710 (9)ref|XP_003519090.1|5e-132PREDICTED: eukaryotic translation initiation factor 3 subunit E-like [Glycine m
JMSF035A06Sequence649007281 (8)ref|XP_009782891.1|9e-135PREDICTED: eukaryotic translation initiation factor 3 subunit E [Nicotiana sylv758004710 (9)ref|XP_003519090.1|3e-119PREDICTED: eukaryotic translation initiation factor 3 subunit E-like [Glycine m
JMSF048E01Sequence707007281 (8)ref|XP_009782891.1|8e-147PREDICTED: eukaryotic translation initiation factor 3 subunit E [Nicotiana sylv711004710 (9)ref|XP_003519090.1|1e-118PREDICTED: eukaryotic translation initiation factor 3 subunit E-like [Glycine m

Alignment

This contig is upended


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rJMSF035A06+                             GAAGGACCCAGATCNNTGACCTGTTAACCAGGACAAGTACN
rJMSF033G15+                                             TGACCTGTTAACCAGGACAAGTACT
                      ____________________________________________________________
consensus                                GAAGGACCCAGATCNNTGACCTGTTAACCAGGACAAGTACT
 
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rJMSF035A06+          TAAATGCCATTCAAACAAATGCTCCTCATCTACTGCG-TATCTGGCAACTGCATTCATTG
rJMSF033G15+          TAAATGCCANTCAAACAAATGCTCCTCATCTACTGCGTTATCTGGCAACTGCATTCATTG
rJMSF048E01+                                                   CTGGCAACTGCATTCATTG
rJMFF003B11+                                                   CTGGCAACTGCATTCATTG
rJMFF011J13+                                                                   TTG
rJMFF034L22+                                                      GCAACTGCATTCATTG
                      ____________________________________________________________
consensus             TAAATGCCATTCAAACAAATGCTCCTCATCTACTGCGTTATCTGGCAACTGCATTCATTG
 
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rJMSF035A06+          TCAACAAAAGAAGACGACCTCAGTTTAAAGATTTTATAAAGGTTATTCAGCCAGAGCAGT
rJMSF033G15+          TCAACAAAAGAAGACGACCTCAGTTTAAAGATTTTATAAAGGTTATTCAGCCAGAGCAGT
rJMSF048E01+          TCAACAAAAGAAGACGACCTCAGTTTAAAGATTTTATAAAGGTTATTCAGCCAGAGCAGT
rJMFF016G24+                                 TTTAAAGATTTTATAAAGGTTATTCAGCCAGAGCAGT
rJMFF003B11+          TCAACAAAAGAAGACGACNTCAGTTTAAAGATTTTATAAAGGTTATTCAGCCAGAGCAGT
rJMFF011J13+          TCAACAAAAGAAGACGACCTCAGTTTAAAGATTTTATAAAGGTTATTCAGCCAGAGCAGT
rJMSF030O21+                      GACGACCTCAGTTTAAAGATTTTATAAAGGTTATTCAGCCAGAGCAGT
rJMFF034L22+          TCAACAAAAGAAGACGACNTCAGTTTAAAGATTTTATAAAGGTTATTCAGCCAGAGCAGT
                      ____________________________________________________________
consensus             TCAACAAAAGAAGACGACCTCAGTTTAAAGATTTTATAAAGGTTATTCAGCCAGAGCAGT
 
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rJMSF035A06+          ACTCTTATGCAGA-CCCCATCACTGAGTTTTTGGCCTGTGTTTATGTCAATTATGACTTC
rJMSF033G15+          ACTCTTATGCAGA-CCCCATCACTGAGTTTTTGGCCTGTGTTTATGTCAATTATGACTTC
rJMSF048E01+          ACTCTTATGCAGA-CCCCATCACTGAGTTTTTGGCCTGTGTTTATGTCAATTATGACTTC
rJMFF016G24+          ACTCTTATGCAGA-CCCCATCANTGAGTTTTTGNCCTGTGTTTATGTCAATTATGACTTC
rJMFF003B11+          ACTCTTATGCAGA-CCCCATCACTGAGTTTTTGGCCTGTGTTTATGTCAATTATGACTTC
rJMFF011J13+          ACTNTTATGCAGACCCCCATCACTGAGTTTTTGGCCTGTGTTTATGTCAATTATGACTTC
rJMSF030O21+          ACTCTTATGCAGA-CCCCATCACTGAGTTTTTGGCCTGTGTTTATGTCAATTATGACTTC
rJMFF034L22+          ACTCTTATGCAGA-CCCCATCACTGAGTTTTTGGCCTGTGTTTATGTCAATTATGACTTC
                      ____________________________________________________________
consensus             ACTCTTATGCAGA-CCCCATCACTGAGTTTTTGGCCTGTGTTTATGTCAATTATGACTTC
 
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rJMSF035A06+          GATGCAGCACAGCAAAAGATGAAAGAGTGTGAAGAGGTAATTTTGAATGATCCATTCTTG
rJMSF033G15+          GATGCAGCACAGCAAAAGATGAAAGAGTGTGAAGAGGTAATTTTGAATGATCCATTCTTG
rJMSF048E01+          GATGCAGCACAGCAAAAGATGAAAGAGTGTGAAGAGGTAATTTTGAATGATCCATTCTTG
rJMFF016G24+          GATGCAGCACAGCAAAAGATGAAAGAGTGTGAAGAGGTAATTTTGAATGATCCATTCTTG
rJMFF003B11+          GATGCAGCACAGCAAAAGATGAAAGAGTGTGAAGAGGTAATTTTGAATGATCCATTCTTG
rJMFF011J13+          GATGCAGCACAGCAAAAGATGAAAGAGTGTGAAGAGGTAATTTTGAATGATCCATTCTTG
rJMSF030O21+          GATGCAGCACAGCAAAAGATGAAAGAGTGTGAAGAGGTAATTTTGAATGATCCATTCTTG
rJMFF034L22+          GATGCAGCACAGCAAAAGATGAAAGAGTGTGAAGAGGTAATTTTGAATGATCCATTCTTG
                      ____________________________________________________________
consensus             GATGCAGCACAGCAAAAGATGAAAGAGTGTGAAGAGGTAATTTTGAATGATCCATTCTTG
 
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rJMSF035A06+          GGCAAAAGAGTTGAAGAGGGCAATTTTTCAACTGTGCCATTGAGGGATGAATTCCTAGAA
rJMSF033G15+          GGCAAAAGAGTTGAAGAGGGCAATTTTTCAACTGTGCCATTGAGGGATGAATTCCTAGAA
rJMSF048E01+          GGCAAAAGAGTTGAAGAGGGCAATTTTTCAACTGTGCCATTGAGGGATGAATTCCTAGAA
rJMFF016G24+          GGCAAAAGAGTTGAAGAGGGCAATTTTTCAACTGTGCCATNGAGGGATGAATTCNTAGAA
rJMFF003B11+          GGCAAAAGAGTTGAAGAGGGCAATTTTTCAACTGTGCCATTGAGGGATGAATTCCTAGAA
rJMFF011J13+          GGCAAAAGAGTTGAAGAGGGCAATTTTTCAACTGTGCCATTGAGGGATGAATTCCTAGAA
rJMSF030O21+          GGCAAAAGAGTTGAAGAGGGCAATTTTTCAACTGTGCCATTGAGGGATGAATTCCTAGAA
rJMFF034L22+          GGCAAAAGAGTTGAAGAGGGCAATTTTTCAACTGTGCCATTGAGGGATGAATTCCTAGAA
JMFN012G07+                      TGAAGAGGGCAATTTTTCAACTGTGCCATTGAGGGATGAATTCCTAGAA
                      ____________________________________________________________
consensus             GGCAAAAGAGTTGAAGAGGGCAATTTTTCAACTGTGCCATTGAGGGATGAATTCCTAGAA
 
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rJMSF035A06+          AATGCTCGCCTTTTTATCTTTGAGACCTACTGCCGCATTCATCAGCGCA-TTGATATGGG
rJMSF033G15+          AATGCTCGCCTTTTTATCTTTGAGACCTACTGCCGCATTCATCAGCGCA-TTGATATGGG
rJMSF048E01+          AATGCTCGCCTTTTTATCTTTGAGACCTACTGCCGCATTCATCAGCGCA-TTGATATGGG
rJMFF016G24+          AATGCTCGCCTTTTTATCTTTGAGACNTNNTGCCGCATTCATCAGCGCACTTGATANGGG
rJMFF003B11+          AATGCTCGCCTTTTTATCTTTGAGACCTACTGCCGCATTCATCAGCGCA-TTGATATGGG
rJMFF011J13+          AATGCTCGCCTTTTTATCTTTGAGACCTACTGCCGCATTCATCAGCGCA-TTGATATGGG
rJMSF030O21+          AATGCTCGCCTTTTTATCTTTGAGACCTACTGCCGCATTCATCAGCGCA-TTGATATGGG
rJMFF034L22+          AATGCTCGCCTTTTTATCTTTGAGACCTACTGCCGCATTCATCAGCGCA-TTGATATGGG
JMFN012G07+           AATGCTCGCCTTTTTATCTTTGAGACCTACTGCCGCATTCATCAGCGCA-TTGATATGGG
                      ____________________________________________________________
consensus             AATGCTCGCCTTTTTATCTTTGAGACCTACTGCCGCATTCATCAGCGCA-TTGATATGGG
 
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rJMSF035A06+          GGTTCTTGCTGAGAAACTAAATTTGAATTATGAGGATGCGGAGAGATGGATTGTGAATCT
rJMSF033G15+          GGTTCTTGCTGAGAAACTAAATTTGAATTATGAGGATGCGGAGAGATGGATTGTGAATCT
rJMSF048E01+          GGTTCTTGCTGAGAAACTAAATTTGAATTATGAGGATGCGGAGAGATGGATTGTGAATCT
rJMFF016G24+          GGTTCTTNNNGAGAAACTAAATTTGAATTATGAGGATGCGGAGAGATGGATTGTGAATCT
rJMFF003B11+          GGTTCTTGCTGAGAAACTAAATTTGAATTATGAGGATGCGGAGAGATGGATTGTGAATCT
rJMFF011J13+          GGTTCTTGCTGAGAAACTAAATTTGAATTATGAGGATGCGGAGAGATGGATTGTGAATCT
rJMSF030O21+          GGTTCTTGCTGAGAAACTAAATTTGAATTATGAGGATGCGGAGAGATGGATTGTGAATCT
rJMFF034L22+          GGTTCTTGCTGAGAAACTAAATTTGAATTATGAGGATGCGGAGAGATGGATTGTGAATCT
JMFN012G07+           GGTTCTTGCTGAGAAACTAAATTTGAATTATGAGGATGCGGAGAGATGGATTGTGAATCT
                      ____________________________________________________________
consensus             GGTTCTTGCTGAGAAACTAAATTTGAATTATGAGGATGCGGAGAGATGGATTGTGAATCT
 
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rJMSF035A06+          TATCAGGACTTCCAAGCTTGATGCTAAGATTGATTCCGAAACAGGAACTGTTATAATGGA
rJMSF033G15+          TATCAGGACTTCCAAGCTTGATGCTAAGATTGATTCCGAAACAGGAACTGTTATAATGGA
rJMSF048E01+          TATCAGGACTTCCAAGCTTGATGCTAAGATTGATTCCGAAACAGGAACTGTTATAATGGA
rJMFF016G24+          TATCAGGACTTCCAAGCTTGATGCTAAGATAGATTCCGAAACAGGAACTGTTATAATGGA
rJMFF003B11+          TATCAGGACTTCCAAGCTTGATGCTAAGATAGATTCCGAAACAGGAACTGTTATAATGGA
rJMFF011J13+          TATCAGGACTTCCAAGCTTGATGCTAAGATAGATTCCGAAACAGGAACTGTTATAATGGA
rJMSF030O21+          TATCAGGACTTCCAAGCTTGATGCTAAGATTGATTCCGAAACAGGAACTGTTATAATGGA
rJMFF034L22+          TATCAGGACTTCCAAGCTTGATGCTAAGATTGATTCCGAAACAGGAACTGTTATAATGGA
JMFN012G07+           TATCAGGACTTCCAAGCTTGATGCTAAGATTGATTCCGAAACAGGAACTGTTATAATGGA
                      ____________________________________________________________
consensus             TATCAGGACTTCCAAGCTTGATGCTAAGATTGATTCCGAAACAGGAACTGTTATAATGGA
 
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rJMSF035A06+          ACCTACTCATCCCAATGTTTATGAGCAGCTAATTGATCATACAAAAGGTCTTTCTGGACG
rJMSF033G15+          ACCTACTCATCCCAATGTTTATGAGCAGCTAATTGATCATACAAAAGGTCTTTCTGGACG
rJMSF048E01+          ACCTACTCATCCCAATGTTTATGAGCAGCTAATTGATCATACAAAAGGTCTTTCTGGACG
rJMFF016G24+          ACCTACTCATCCCAATGTTTATGAGCAGNTAATTGATCATACAAAAGGTCTTTCTGGNCG
rJMFF003B11+          ACCTACTCATCCCAATGTTTATGAGCAGCTAATTGATCATACAAAAGGTCTTTCTGGACG
rJMFF011J13+          ACCTACTCATCCCAATGTTTATGAGCAGCTAATTGATCATACAAAAGGTCTTTCTGGACG
rJMSF030O21+          ACCTACTCATCCCAATGTTTATGAGCAGCTAATTGATCATACAAAAGGTCTTTCTGGACG
rJMFF034L22+          ACCTACTCATCCCAATGTTTATGAGCAGCTAATTGATCATACAAAAGGTCTTTCTGGACG
JMFN012G07+           ACCTACTCATCCCAATGTTTATGAGCAGCTAATTGATCATATAAAAGGTCTTTCTGGACG
                      ____________________________________________________________
consensus             ACCTACTCATCCCAATGTTTATGAGCAGCTAATTGATCATACAAAAGGTCTTTCTGGACG
 
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rJMSF035A06+          TACATACAAGTTGGTGAGTCAGCTTCTTGAGCATGCCCAGTCACAAGCACAGCCTACCAG
rJMSF033G15+          TACATACAAGTTGGTGAGTCAGCTTCTTGAGCATGCCCAGTCACAAGCACAGCCTACCAG
rJMSF048E01+          TACATACAAGTTGGTGAGTCAGCTTCTTGAGCATGCCCAGTCACAAGCACAGCCTACCAG
rJMFF016G24+          TACATACAAGTTGGNGAGTCAGCTTCTTGAGCATGCCCAGTCACAAGCACAGCNTACCAG
rJMFF003B11+          TACATACAAGTTGGTGAGTCAGCTTCTTGAGCATGCCCAGTCACAAGCACAGCCTACCAG
rJMFF011J13+          TACATACAAGTTGGTGAGTCAGCTTCTTGAGCATGCCCAGTCACAAGCACAGCCTACCAG
rJMSF030O21+          TACATACAAGTTGGTGAGTCAGCTTCTTGAGCATGCCCAGTCACAAGCACAGCCTACCAG
rJMFF034L22+          TACATACAAGTTGGTGAGTCAGCTTCTTGAGCATGCCCAGTCACAAGCACAGCCTACCAG
JMFN012G07+           TACATACAAGTTGGTGAGTCAGCTTCTTGAGCATGCCCAGTCACAAGCACAGCCTACCAG
                      ____________________________________________________________
consensus             TACATACAAGTTGGTGAGTCAGCTTCTTGAGCATGCCCAGTCACAAGCACAGCCTACCAG
 
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rJMSF035A06+          ATAGTTTTGGTATTGAAGCCAAAGGATTTTTTGGTAGTCAATACTTTTCGAAGAGTTTTG
rJMSF033G15+          ATAGTTTTGGTATTGAAGCCAAAGGATTTTTTGGTAGTCAATACTTTTCGAAGAGTTTTG
rJMSF048E01+          ATAGTTTTGGTATTGAAGCCAAAGGATTTTTTGGTAGTCAATACTTTTCGAAGAGTTTTG
rJMFF016G24+          ATAGTTTTGGTATTGAAGCCAAAGGATTTTNTGGTAGTCAATACTTTTNGAAGAGTTTTG
rJMFF003B11+          ATAGTTTTGGTATTGAAGCCAAAGGATTTTTTGGTAGTCAATACTTTTCGAAGAGTTTTG
rJMFF011J13+          ATAGTTTTGGTATTGAAGCCAAAGGATTTTTTGGTAGTCAATACTTTTCGAAGAGTTTTG
rJMSF030O21+          ATAGTTTTGGTATTGAAGCCAAAGGATTTTTTGGTAGTCAATACTTTTCGAAGAGTTTTG
rJMFF034L22+          ATAGTTTTGGTATTGAAGCCAAAGGATTTTTTGGTAGTCAATACTTTTCGAAGAGTTTTG
JMFN012G07+           ATAGTTTTGGTATTGAAGCCAAAGGATTTTTTGGTAGTCAATACTTTTCGAAGAGTTTTG
                      ____________________________________________________________
consensus             ATAGTTTTGGTATTGAAGCCAAAGGATTTTTTGGTAGTCAATACTTTTCGAAGAGTTTTG
 
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rJMSF035A06+          TTTTGGTTTAGTTACTTATTTTAATGCTTTGTATTGTGTTAGTTTTATGGAATTCCAACT
rJMSF033G15+          TTTTGGTTTAGTTACTTATTTTAATGCTTTGTATTGTGTTAGTTTTATGGAATTCCAACT
rJMSF048E01+          TTTTGGTTTAGTTACTTATTTTAATGCTTTGTATTGTGTTAGTTTTATGGAATTCCAACT
rJMFF016G24+          TTTTGGTNTAGTTACTTATTTNAATGCTTTGTATTGTGTTAGTTTTATGGAATTCCAACT
rJMFF003B11+          TTTTGGTTTAGTTACTTATTTTAATGCTTTGTATTGTGTTAGTTTTATGGAATTCCAACT
rJMFF011J13+          TTTTGGTTTAGTTACTTATTTTAATGCTTTGTATTGTGTTAGTTTTATGGAATTCCAACT
rJMSF030O21+          TTTTGGTTTAGTTACTTATTTTAATGCTTTGTATTGTGTTAGTTTTATGGAATTCCAACT
rJMFF034L22+          TTTTGGTTTAGTTACTTATTTTAATGCTTTGTATTGTGTTAGTTTTATGGAATTCCAACT
JMFN012G07+           TTTTGGTTTAGTTACTTATTTTAATGCTTTGTATTGTGTTAGTTTTATGGAATTCCAACT
                      ____________________________________________________________
consensus             TTTTGGTTTAGTTACTTATTTTAATGCTTTGTATTGTGTTAGTTTTATGGAATTCCAACT
 
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rJMSF033G15+          TTTTAAGATTGATGGATTT                                         
rJMSF048E01+          TTTTAAGATTGATGGATTTTATC                                     
rJMFF016G24+          TTTTAAGATTGATGGATTCTATCATGGTACTATTTATCATTCAGTAATCTGTAGTGC   
rJMFF003B11+          TTTTAAGATTGATGGATTTTATCATGGTACTATTTATCATTCAGTAATCTGTAGTGC   
rJMFF011J13+          TTTTAAGATTGATGGATTTTATCATGGTACTATTTATCATTCAGTAATCTGTAGTGC   
rJMSF030O21+          TTTTAAGATTGATGGATTTTATCATGGTACTATTTATCATTCAGTAATC           
rJMFF034L22+          TTTTAAGATTGATGGATTTTATCATGGTACTATTTATCATTCAGTAATCTGTAGTGCAG 
JMFN012G07+           TTTTAAGATTGATGGATTTTATCATGGTACTATTTATCATTCAGTAATCTGTAGTGCAGT
                      ____________________________________________________________
consensus             TTTTAAGATTGATGGATTTTATCATGGTACTATTTATCATTCAGTAATCTGTAGTGCAGT