Contig 004673:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF050E19Sequence596004673 (5)ref|XP_011084423.1|2e-23PREDICTED: cleavage and polyadenylation specificity factor subunit 2 [Sesamum i555007000 (4)emb|CDP05185.1|3e-45unnamed protein product [Coffea canephora]
JMFS066A07Sequence629004673 (5)gb|EYU19553.1|8e-37hypothetical protein MIMGU_mgv1a0019021mg, partial [Erythranthe guttata]
JMSF001O09Sequence206004673 (5)719007000 (4)emb|CDP05185.1|3e-97unnamed protein product [Coffea canephora]
JMSF029M15Sequence689004673 (5)gb|EYU19553.1|9e-42hypothetical protein MIMGU_mgv1a0019021mg, partial [Erythranthe guttata]735007000 (4)emb|CDP05185.1|1e-91unnamed protein product [Coffea canephora]
JMSF030F21Sequence634004673 (5)gb|EYU19553.1|1e-31hypothetical protein MIMGU_mgv1a0019021mg, partial [Erythranthe guttata]651007000 (4)emb|CDP05185.1|6e-99unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF029M15+ GNTATTCCAAAGTGTTTCATGGCATAGGNCAGGNCACC
                      ____________________________________________________________
consensus GNTATTCCAAAGTGTTTCATGGCATAGGNCAGGNCACC
 
. : . : . : . : . : . :
JMFS066A07+ AAGGTGAAGGGTATCTGGATACGAGAGCAGCACGGCATCCACTGTTGATGCTACCCTGGA
JMSF029M15+ AAGGTGAAGGGTATCTGGATACGAGAGCAGCACGGCATCCACTGTTGATGCTACCCTGGA
JMSF030F21+ TACGAGAGCAGCACGGCATCCACTGTTGATGCTACCCTGGA
                      ____________________________________________________________
consensus AAGGTGAAGGGTATCTGGATACGAGAGCAGCACGGCATCCACTGTTGATGCTACCCTGGA
 
. : . : . : . : . : . :
JMFS066A07+ CAGGGGTTGGAGAAGAGAGGTATCAAAGTGGTCATTCCAACCACAGTCAATAAGGAAGTT
JMSF029M15+ CAGGGGTTGGAGAAGAGAGGTATCAAAGTGGTCATTCCAACCACAGTCAATAAGGAAGTT
JMSF030F21+ CAGGGGTTGGAGAAGAGAGGTATCAAAGTGGTCATTCCAACCACAGTCAATAAGGAAGTT
JMFF050E19+ TGGAGAAGAGAGGTATCAAAGTGGTCATTCCAACCACAGTCAATAAGGAAGTT
                      ____________________________________________________________
consensus CAGGGGTTGGAGAAGAGAGGTATCAAAGTGGTCATTCCAACCACAGTCAATAAGGAAGTT
 
. : . : . : . : . : . :
JMFS066A07+ AAAGCCATCAACGGAGACAAGGTAGGAGAGAGGGTTTTCGTTATACACTCCACACAATGG
JMSF029M15+ AAAGCCATCAACGGAGACAAGGTAGGAGAGAGGGTTTTCGTTATACACTCCACACAATGG
JMSF030F21+ AAAGCCATCAACGGAGACAAGGTAGGAGAGAGGGTTTTCGTTATACACTCCACACAATGG
JMFF050E19+ AAAGCCATCAACGGAGACAAGGTAGGAGAGAGGGTTTTCGTTATACACTCCACACAATGG
                      ____________________________________________________________
consensus AAAGCCATCAACGGAGACAAGGTAGGAGAGAGGGTTTTCGTTATACACTCCACACAATGG
 
. : . : . : . : . : . :
JMFS066A07+ CTTCACCTGCACTGAAGTTCCCATGGCAGTGATTCTCTTTGCTTTCAACTGAGCTTTGCA
JMSF029M15+ CTTCACCTGCACTGAAGTTCCCATGGCAGTGATTCTCTTTGCTTTCAACTGAGCTTTGCA
JMSF030F21+ CTTCACCTGCACTGAAGTTCCCATGGCAGTGATTCTCTTTGCTTTCAACTGAGCTTTGCA
JMFF050E19+ CTTCACCTGCACTGAAGTTCCCATGGCAGTGATTCTCTTTGCTTTCAACTGAGCTTTGCA
                      ____________________________________________________________
consensus CTTCACCTGCACTGAAGTTCCCATGGCAGTGATTCTCTTTGCTTTCAACTGAGCTTTGCA
 
. : . : . : . : . : . :
JMFS066A07+ GTTGTGAGGGAGAAGGCTTTCCGTCTTTCCGGCGTTTGTTGGGCAAAGAAGCTTTGCGAT
JMSF029M15+ GTTGTGAGGGAGAAGGCTTTCCGTCTTTCCGGCGTTTGTTGGGCAAAGAAGCTTTGCGAT
JMSF030F21+ GTTGTGAGGGAGAAGGCTTTCCGTCTTTCCGGCGTTTGTTGGGCAAAGAAGCTTTGCGAT
JMFF050E19+ GTTGTGAGGGAGAAGGCTTTCCGTCTTTCCGGCGTTTGTTGGGCAAAGAAGCTTTGCGAT
                      ____________________________________________________________
consensus GTTGTGAGGGAGAAGGCTTTCCGTCTTTCCGGCGTTTGTTGGGCAAAGAAGCTTTGCGAT
 
. : . : . : . : . : . :
JMFS066A07+ GCAAAATGGTGGAGCAGTTACCTTACTGGCTGTGGGCCAACCAGGCACCCGGCGAGGCTG
JMSF029M15+ GCAAAATGGTGGAGC-------TTACTGGCTGTGGGCCAACCAGGCACCCGGCGAGGCTG
JMSF030F21+ GCAAAATGGTGGAGC-------TTACTGGCTGTGGGCCAACCAGGCACCCGGCGAGGCTG
JMFF050E19+ GCAAAATGGTGGAGC-------TTACTGGCTGTGGGCCAACCAGGCACCCGGCGAGGCTG
                      ____________________________________________________________
consensus GCAAAATGGTGGAGC-------TTACTGGCTGTGGGCCAACCAGGCACCCGGCGAGGCTG
 
. : . : . : . : . : . :
JMFS066A07+ AGGTTAGGTCGTTCGCCAGAGATGGTGAGGGAGACAGGGAGAGGAGCGAGGGCGTTGGCT
JMSF029M15+ AGGTTAGGTCGTTCGCCAGAGATGGTGAGGGAGACAGGGAGAGGAGCGAGGGCGTTGGCT
JMSF030F21+ AGGTTAGGTCGTTCGCCAGAGATGGTGAGGGAGACAGGGAGAGGAGCGAGGGCGTTGGCT
JMFF050E19+ AGGTTAGGTCGTTCGCCAGAGATGGTGAGGGAGACAGGGAGAGGAGCGAGGGCGTTGGCT
                      ____________________________________________________________
consensus AGGTTAGGTCGTTCGCCAGAGATGGTGAGGGAGACAGGGAGAGGAGCGAGGGCGTTGGCT
 
. : . : . : . : . : . :
JMFS066A07+ TCGGAGGATGGAGAAGCAGAAACCGGAGGACTAAGAAGTGAGAGTAGGGCCAGATGGTGT
JMSF029M15+ TCGGAGGATGGAGAAGCAGAAACCGGAGGACTAAGAAGTGAGAGTAGGGCCAGATGGTGT
JMSF030F21+ TCGGAGGATGGAGAAGCAGAAACCGGAGGACTAAGAAGTGAGAGTAGGGCCAGATGGTGT
JMSF001O09+ AAGAAGTGAGAGTAGGNCCAGATGGTGT
JMFF050E19+ TCGGAGGATGGAGAAGCAGAAACCGGAGGACTAAGAAGTGAGAGTAGGGCCAGATGGTGT
                      ____________________________________________________________
consensus TCGGAGGATGGAGAAGCAGAAACCGGAGGACTAAGAAGTGAGAGTAGGGCCAGATGGTGT
 
. : . : . : . : . : . :
JMFS066A07+ GCCGGCGTAACTGCTTGACAGGAGTGTCGACGAGGGTGGTGGCCGGAGGGCGGAGGCGGC
JMSF029M15+ GCCGGCGTAACTGCTTGACAGGAGTGTCGACGAGGGTGGTGGCCGGAGGGCGGAGGCGGC
JMSF030F21+ GCCGGCGTAACTGCTTGACAGGAGTGTCGACGAGGGTGGTGGCCGGAGGGCGGAGGCGGC
JMSF001O09+ GCCGGCGTAACTGCTTGACAGGAGTGTCGACGAGGGTGGTGGCCGGAGGGCGGAGGCGGC
JMFF050E19+ GCCGGCGTAACTGCTTGACAGGAGTGTCGACGAGGGTGGTGGCCGGAGGGCGGAGGCGGC
                      ____________________________________________________________
consensus GCCGGCGTAACTGCTTGACAGGAGTGTCGACGAGGGTGGTGGCCGGAGGGCGGAGGCGGC
 
. : . : . : . : . : . :
JMFS066A07+ GAGACGCAGAGGACAGTGGAGAACTGTGAAAGTGAGCCAATGAGGACTGAGGAGTGGAGA
JMSF029M15+ GAGACGCAGAGGACAGTGGAGAACTGTGAAAGTGAGCCAATGAGGACTGAGGAGTGGAGA
JMSF030F21+ GAGACGCAGAGGACAGTGGAGAACTGTGAAAGTGAGCCAATGAGGACTGAGGAGTGGAGA
JMSF001O09+ GAGACGCAGAGGACAGTGGAGAACTGTGAAAGTGAGCCAATGAGGACTGAGGAGTGGAGA
JMFF050E19+ GAGACGCAGAGGACAGTGGAGAACTGTGAAAGTGAGCCAATGAGGACTGAGGAGTGGAGA
                      ____________________________________________________________
consensus GAGACGCAGAGGACAGTGGAGAACTGTGAAAGTGAGCCAATGAGGACTGAGGAGTGGAGA
 
. : . : . : . : . : . :
JMFS066A07+ AGGCGAGAAACAGAGAAGCAGATCTGAAT
JMSF029M15+ AGGCGAGAAACAGAGAAGCAGATCTGAATAAGGGATTAGAGTTGAAAAGGCACGCTCC
JMSF030F21+ AGGCGAGAAACAGAGAAGCAGATCTGAATAAGGGATTAGAGTTGAAAAGGCACGCTCC
JMSF001O09+ AGGCGAGAAACAGAGAAGCAGATCTGAATAAGGGATTAGAGTTGAAAAGGCACGCTCC
JMFF050E19+ AGGCGAGAAACAGAGAAGCAGATCTGAATAAGGGATTAGAGTTGAAAAGGCACGCTCCTC
                      ____________________________________________________________
consensus AGGCGAGAAACAGAGAAGCAGATCTGAATAAGGGATTAGAGTTGAAAAGGCACGCTCCTC